Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35917 * 116.99676 * 2 1 4 4 C 1.38749 * 120.04372 * 0.28371 * 3 2 1 5 5 C 1.38128 * 119.95197 * 180.27374 * 4 3 2 6 6 C 1.50703 * 119.97426 * 179.74625 * 5 4 3 7 7 H 1.08998 * 109.47145 * 219.72112 * 6 5 4 8 8 N 1.46900 * 109.47047 * 339.72336 * 6 5 4 9 9 C 1.50700 * 109.47148 * 99.72091 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.46986 * 270.00126 * 13 11 9 15 15 H 1.48496 * 109.47029 * 30.00143 * 13 11 9 16 16 H 1.48499 * 109.47352 * 149.99973 * 13 11 9 17 17 C 1.38388 * 120.04595 * 359.46168 * 5 4 3 18 18 Cl 1.73597 * 119.95813 * 180.25532 * 17 5 4 19 19 C 1.38347 * 120.08104 * 0.24250 * 17 5 4 20 20 C 1.38164 * 120.04609 * 0.03504 * 19 17 5 21 21 C 1.50701 * 120.02017 * 179.97438 * 20 19 17 22 22 H 1.09001 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99029 * 1 2 3 24 24 H 1.09001 * 109.47460 * 59.99215 * 1 2 3 25 25 H 1.07993 * 120.02241 * 359.97438 * 4 3 2 26 26 H 1.00907 * 110.99867 * 296.04432 * 8 6 5 27 27 H 1.00896 * 111.00376 * 59.99771 * 8 6 5 28 28 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 29 29 H 1.08000 * 119.97372 * 180.02562 * 19 17 5 30 30 H 1.08993 * 109.47093 * 90.00354 * 21 20 19 31 31 H 1.09002 * 109.47160 * 210.00295 * 21 20 19 32 32 H 1.08997 * 109.47218 * 329.99772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 0.0059 5 6 1.9201 3.6050 0.0002 6 6 1.1007 4.8698 0.0009 7 1 1.5636 5.6029 -0.6596 8 7 -0.2580 4.5732 -0.4723 9 6 1.0352 5.4251 1.4003 10 1 1.5371 4.9136 2.2083 11 6 0.3354 6.5868 1.6489 12 7 -0.2754 7.2099 0.6649 13 14 0.2547 7.2756 3.3834 14 1 -0.9239 6.7087 4.0868 15 1 1.4924 6.9113 4.1187 16 1 0.1316 8.7543 3.3237 17 6 3.3022 3.6764 -0.0002 18 17 4.0902 5.2232 -0.0007 19 6 4.0565 2.5167 0.0001 20 6 3.4311 1.2847 0.0000 21 6 4.2533 0.0218 -0.0003 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.2127 2.3199 0.0102 26 1 -0.2466 4.2601 -1.4315 27 1 -0.7087 3.8954 0.1239 28 1 -0.2332 6.8524 -0.2358 29 1 5.1349 2.5745 0.0002 30 1 4.4516 -0.2829 1.0272 31 1 3.7056 -0.7682 -0.5142 32 1 5.1973 0.2029 -0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = -27.325378 kcal Electronic energy + Delta-G solvation = -16947.783719 eV Core-core repulsion = 14127.164238 eV Total energy + Delta-G solvation = -2820.619481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.08380 -37.63812 -35.57537 -35.18816 -32.22700 -30.67524 -29.55968 -27.43407 -27.10139 -24.86181 -22.34395 -21.68782 -20.34024 -17.48957 -16.74851 -16.17311 -15.71164 -15.64506 -14.63192 -14.10310 -13.81563 -13.63078 -13.49847 -13.33942 -12.56988 -12.45280 -12.09762 -11.84143 -11.65311 -11.46855 -11.32488 -10.84014 -10.69220 -10.49451 -10.17790 -10.05349 -9.83962 -8.91008 -8.34328 -8.19283 -7.60484 -7.53746 -6.16027 -3.97984 1.60364 1.70655 2.87688 3.41023 3.48582 3.52460 3.67860 3.99291 4.62713 5.01464 5.02124 5.18892 5.22521 5.37328 5.47653 5.50738 5.58705 5.72452 5.77490 5.81448 6.00482 6.05214 6.31470 6.50502 6.63648 6.72799 6.95281 7.18341 7.54377 7.95922 8.24839 8.63711 8.69112 9.06353 9.83782 11.24151 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.007927 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.003109 B = 3531.209239 C = 4225.911556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.206 4.206 5 C -0.025 4.025 6 C 0.236 3.764 7 H 0.053 0.947 8 N -0.829 5.829 9 C -0.595 4.595 10 H 0.046 0.954 11 C 0.041 3.959 12 N -0.892 5.892 13 Si 1.064 2.936 14 H -0.290 1.290 15 H -0.290 1.290 16 H -0.285 1.285 17 C -0.063 4.063 18 Cl -0.064 7.064 19 C -0.078 4.078 20 C -0.135 4.135 21 C -0.095 4.095 22 H 0.096 0.904 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.130 0.870 26 H 0.302 0.698 27 H 0.324 0.676 28 H 0.289 0.711 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -12.782 -2.496 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.225 4.225 5 C -0.028 4.028 6 C 0.127 3.873 7 H 0.071 0.929 8 N -0.357 5.357 9 C -0.634 4.634 10 H 0.064 0.936 11 C -0.169 4.169 12 N -0.526 5.526 13 Si 0.893 3.107 14 H -0.217 1.217 15 H -0.216 1.216 16 H -0.211 1.211 17 C -0.090 4.090 18 Cl -0.035 7.035 19 C -0.097 4.097 20 C -0.136 4.136 21 C -0.152 4.152 22 H 0.115 0.885 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.113 0.887 27 H 0.138 0.862 28 H 0.102 0.898 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.487 -10.798 -1.477 11.786 hybrid contribution 0.747 -2.024 -0.906 2.340 sum 5.234 -12.822 -2.382 14.053 Atomic orbital electron populations 1.23028 0.78680 1.03430 1.01684 1.85996 1.21109 1.27055 1.88963 1.18807 0.91677 0.84014 0.97322 1.21007 1.00161 0.91169 1.10134 1.21269 0.93036 0.98099 0.90421 1.18499 0.83293 0.87212 0.98300 0.92940 1.59446 1.21537 1.50910 1.03815 1.21513 1.38462 1.11965 0.91474 0.93609 1.25546 0.92878 0.93637 1.04848 1.70524 1.38424 1.40664 1.02959 0.83646 0.75901 0.76328 0.74842 1.21716 1.21639 1.21107 1.20605 0.92663 0.86625 1.09100 1.98336 1.79762 1.28454 1.96934 1.20678 0.99494 0.89841 0.99720 1.18917 0.90501 0.95345 1.08884 1.20493 0.98418 0.94372 1.01878 0.88543 0.92467 0.92780 0.85192 0.88714 0.86215 0.89807 0.85191 0.91824 0.91509 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.32 -4.72 9.54 -19.48 -0.19 -4.91 16 3 C 0.13 2.15 6.66 -39.22 -0.26 1.89 16 4 C -0.21 -3.81 8.24 -39.43 -0.32 -4.14 16 5 C -0.03 -0.53 5.01 -104.61 -0.52 -1.05 16 6 C 0.24 5.70 1.92 -70.01 -0.13 5.56 16 7 H 0.05 1.39 7.22 -51.93 -0.37 1.02 16 8 N -0.83 -18.45 7.28 -6.65 -0.05 -18.50 16 9 C -0.60 -16.26 8.48 -34.44 -0.29 -16.56 16 10 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 11 C 0.04 1.15 5.39 -17.82 -0.10 1.05 16 12 N -0.89 -26.64 13.51 55.43 0.75 -25.89 16 13 Si 1.06 25.49 29.90 -169.99 -5.08 20.41 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 17 C -0.06 -1.25 6.30 -39.49 -0.25 -1.50 16 18 Cl -0.06 -1.28 27.31 -51.86 -1.42 -2.69 16 19 C -0.08 -1.33 9.48 -39.57 -0.38 -1.70 16 20 C -0.14 -2.19 5.89 -104.48 -0.62 -2.80 16 21 C -0.09 -1.19 9.79 36.01 0.35 -0.84 16 22 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.67 7.65 -51.93 -0.40 0.27 16 24 H 0.05 0.59 7.67 -51.93 -0.40 0.19 16 25 H 0.13 2.23 4.49 -52.49 -0.24 2.00 16 26 H 0.30 5.92 9.06 -39.29 -0.36 5.56 16 27 H 0.32 6.89 7.27 -39.29 -0.29 6.61 16 28 H 0.29 8.64 6.39 -40.82 -0.26 8.38 16 29 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 32 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -30.62 283.29 -6.83 -37.45 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -3.59 Total: 8.64 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.53 Total: -18.78 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.70 Total: -44.39 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.19 Total: -4.91 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.42 Total: -2.69 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.62 -6.83 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.126 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds