Wall clock time and date at job start Mon Mar 30 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35917 * 116.99676 * 2 1 4 4 C 1.38749 * 120.04372 * 0.28371 * 3 2 1 5 5 C 1.38128 * 119.95197 * 180.27374 * 4 3 2 6 6 C 1.50703 * 119.97426 * 179.74625 * 5 4 3 7 7 H 1.08998 * 109.47145 * 219.72112 * 6 5 4 8 8 N 1.46900 * 109.47047 * 339.72336 * 6 5 4 9 9 C 1.50700 * 109.47148 * 99.72091 * 6 5 4 10 10 H 1.08002 * 119.99770 * 0.02562 * 9 6 5 11 11 C 1.37871 * 120.00083 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00147 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00278 * 180.02562 * 11 9 6 14 14 H 1.48500 * 109.46986 * 270.00126 * 13 11 9 15 15 H 1.48496 * 109.47029 * 30.00143 * 13 11 9 16 16 H 1.48499 * 109.47352 * 149.99973 * 13 11 9 17 17 C 1.38388 * 120.04595 * 359.46168 * 5 4 3 18 18 Cl 1.73597 * 119.95813 * 180.25532 * 17 5 4 19 19 C 1.38347 * 120.08104 * 0.24250 * 17 5 4 20 20 C 1.38164 * 120.04609 * 0.03504 * 19 17 5 21 21 C 1.50701 * 120.02017 * 179.97438 * 20 19 17 22 22 H 1.09001 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99029 * 1 2 3 24 24 H 1.09001 * 109.47460 * 59.99215 * 1 2 3 25 25 H 1.07993 * 120.02241 * 359.97438 * 4 3 2 26 26 H 1.00907 * 110.99867 * 296.04432 * 8 6 5 27 27 H 1.00896 * 111.00376 * 59.99771 * 8 6 5 28 28 H 0.97005 * 119.99661 * 359.97438 * 12 11 9 29 29 H 1.08000 * 119.97372 * 180.02562 * 19 17 5 30 30 H 1.08993 * 109.47093 * 90.00354 * 21 20 19 31 31 H 1.09002 * 109.47160 * 210.00295 * 21 20 19 32 32 H 1.08997 * 109.47218 * 329.99772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2912 2.3752 0.0059 5 6 1.9201 3.6050 0.0002 6 6 1.1007 4.8698 0.0009 7 1 1.5636 5.6029 -0.6596 8 7 -0.2580 4.5732 -0.4723 9 6 1.0352 5.4251 1.4003 10 1 1.5371 4.9136 2.2083 11 6 0.3354 6.5868 1.6489 12 7 -0.2754 7.2099 0.6649 13 14 0.2547 7.2756 3.3834 14 1 -0.9239 6.7087 4.0868 15 1 1.4924 6.9113 4.1187 16 1 0.1316 8.7543 3.3237 17 6 3.3022 3.6764 -0.0002 18 17 4.0902 5.2232 -0.0007 19 6 4.0565 2.5167 0.0001 20 6 3.4311 1.2847 0.0000 21 6 4.2533 0.0218 -0.0003 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.2127 2.3199 0.0102 26 1 -0.2466 4.2601 -1.4315 27 1 -0.7087 3.8954 0.1239 28 1 -0.2332 6.8524 -0.2358 29 1 5.1349 2.5745 0.0002 30 1 4.4516 -0.2829 1.0272 31 1 3.7056 -0.7682 -0.5142 32 1 5.1973 0.2029 -0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889835.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:55 Heat of formation + Delta-G solvation = -47.236080 kcal Electronic energy + Delta-G solvation = -16948.647112 eV Core-core repulsion = 14127.164238 eV Total energy + Delta-G solvation = -2821.482874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39502 -38.98848 -37.11743 -36.82103 -34.00471 -32.31111 -30.92948 -28.68318 -28.44193 -26.64259 -23.96855 -23.08396 -21.87246 -19.09575 -18.47579 -17.53120 -17.13274 -16.78387 -16.40467 -15.70970 -15.42150 -15.04617 -14.98099 -14.62386 -14.03118 -13.89667 -13.39361 -13.30976 -13.04927 -12.68798 -12.64778 -12.57404 -12.36313 -12.11522 -11.93893 -11.57282 -11.43091 -10.77577 -10.45882 -9.74001 -9.38988 -8.96178 -8.34331 -6.18577 0.22030 0.27946 1.38696 1.54471 1.62556 1.79576 2.28712 2.54752 2.68050 3.34108 3.71902 3.74743 4.07513 4.16447 4.25592 4.32216 4.36255 4.49764 4.57068 4.68103 4.79390 4.85182 4.97259 5.15417 5.20000 5.34015 5.45938 5.63898 5.94479 6.23232 6.31919 6.65152 6.79547 7.00828 7.69323 9.02279 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.007927 C = 0.006624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.003109 B = 3531.209239 C = 4225.911556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.209 4.209 5 C -0.056 4.056 6 C 0.244 3.756 7 H 0.021 0.979 8 N -0.835 5.835 9 C -0.594 4.594 10 H 0.030 0.970 11 C -0.006 4.006 12 N -0.920 5.920 13 Si 1.104 2.896 14 H -0.277 1.277 15 H -0.280 1.280 16 H -0.285 1.285 17 C -0.083 4.083 18 Cl -0.077 7.077 19 C -0.075 4.075 20 C -0.130 4.130 21 C -0.092 4.092 22 H 0.131 0.869 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.138 0.862 26 H 0.318 0.682 27 H 0.330 0.670 28 H 0.278 0.722 29 H 0.157 0.843 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.681 -15.115 -2.032 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.230 6.230 3 C 0.082 3.918 4 C -0.228 4.228 5 C -0.059 4.059 6 C 0.134 3.866 7 H 0.039 0.961 8 N -0.364 5.364 9 C -0.632 4.632 10 H 0.048 0.952 11 C -0.210 4.210 12 N -0.556 5.556 13 Si 0.928 3.072 14 H -0.203 1.203 15 H -0.206 1.206 16 H -0.211 1.211 17 C -0.110 4.110 18 Cl -0.048 7.048 19 C -0.093 4.093 20 C -0.131 4.131 21 C -0.149 4.149 22 H 0.149 0.851 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.155 0.845 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.175 0.825 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.046 -13.160 -1.020 14.131 hybrid contribution 0.587 -1.475 -1.099 1.931 sum 5.633 -14.635 -2.119 15.824 Atomic orbital electron populations 1.23338 0.76835 1.05778 1.01717 1.86012 1.22945 1.25632 1.88450 1.18937 0.92247 0.84233 0.96424 1.21061 1.00725 0.90947 1.10072 1.21000 0.93516 0.97630 0.93777 1.18067 0.84317 0.88222 0.95950 0.96100 1.59188 1.20840 1.51496 1.04899 1.21696 1.37186 1.11651 0.92701 0.95208 1.26745 0.92549 0.94338 1.07363 1.70635 1.40571 1.41469 1.02921 0.83108 0.76732 0.75782 0.71578 1.20271 1.20568 1.21121 1.20831 0.92616 0.87078 1.10502 1.98322 1.79810 1.29628 1.97086 1.20968 1.00731 0.89027 0.98615 1.19429 0.90711 0.96522 1.06451 1.20583 0.98828 0.92424 1.03059 0.85110 0.92867 0.92321 0.84479 0.87011 0.85597 0.91007 0.82521 0.90606 0.90884 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.32 -8.50 9.54 -92.61 -0.88 -9.39 16 3 C 0.13 4.05 6.66 22.50 0.15 4.20 16 4 C -0.21 -7.57 8.24 22.37 0.18 -7.38 16 5 C -0.06 -2.38 5.01 -19.85 -0.10 -2.48 16 6 C 0.24 12.06 1.92 43.42 0.08 12.14 16 7 H 0.02 1.17 7.22 -2.39 -0.02 1.15 16 8 N -0.83 -37.69 7.28 -174.95 -1.27 -38.97 16 9 C -0.59 -32.99 8.48 25.60 0.22 -32.78 16 10 H 0.03 1.71 7.74 -2.91 -0.02 1.69 16 11 C -0.01 -0.36 5.39 84.65 0.46 0.10 16 12 N -0.92 -56.06 13.51 21.45 0.29 -55.77 16 13 Si 1.10 51.58 29.90 68.60 2.05 53.64 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 17 C -0.08 -3.28 6.30 22.33 0.14 -3.14 16 18 Cl -0.08 -3.14 27.31 -2.72 -0.07 -3.21 16 19 C -0.07 -2.39 9.48 22.28 0.21 -2.18 16 20 C -0.13 -3.84 5.89 -19.77 -0.12 -3.95 16 21 C -0.09 -1.95 9.79 71.24 0.70 -1.25 16 22 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.05 1.13 7.65 -2.39 -0.02 1.11 16 24 H 0.06 1.14 7.67 -2.39 -0.02 1.13 16 25 H 0.14 4.60 4.49 -2.91 -0.01 4.59 16 26 H 0.32 12.59 9.06 -89.69 -0.81 11.78 16 27 H 0.33 14.10 7.27 -89.70 -0.65 13.44 16 28 H 0.28 17.12 6.39 -92.70 -0.59 16.52 16 29 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.48 7.53 -2.39 -0.02 1.46 16 32 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 Total: -1.00 -66.38 283.29 3.02 -63.36 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.13 Total: 25.59 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.04 Total: -35.25 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -0.98 Total: -94.74 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.88 Total: -9.39 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.64 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.07 Total: -3.21 kcal Total: -66.38 3.02 -63.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889835.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.123 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds