Wall clock time and date at job start Mon Mar 30 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35923 * 117.00126 * 2 1 4 4 C 1.38744 * 120.04031 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.95067 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.97292 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47210 * 144.99862 * 6 5 4 8 8 N 1.46899 * 109.47483 * 24.99532 * 6 5 4 9 9 C 1.50702 * 109.46869 * 264.99569 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.38385 * 120.04737 * 0.25372 * 5 4 3 18 18 Cl 1.73596 * 119.95605 * 179.72536 * 17 5 4 19 19 C 1.38346 * 120.08323 * 359.48924 * 17 5 4 20 20 C 1.38169 * 120.03984 * 0.51469 * 19 17 5 21 21 C 1.50706 * 120.01963 * 179.71941 * 20 19 17 22 22 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47087 * 300.00756 * 1 2 3 24 24 H 1.09006 * 109.46931 * 60.00367 * 1 2 3 25 25 H 1.07995 * 120.02429 * 0.02562 * 4 3 2 26 26 H 1.00903 * 111.00048 * 300.00270 * 8 6 5 27 27 H 1.00904 * 110.99882 * 63.95460 * 8 6 5 28 28 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 29 29 H 1.08003 * 119.97938 * 180.24934 * 19 17 5 30 30 H 1.08995 * 109.47235 * 270.02376 * 21 20 19 31 31 H 1.09001 * 109.46793 * 30.01775 * 21 20 19 32 32 H 1.08994 * 109.46844 * 150.01633 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3752 -0.0005 5 6 1.9203 3.6049 0.0000 6 6 1.1010 4.8697 -0.0012 7 1 1.6093 5.6325 0.5888 8 7 -0.2195 4.5984 0.5825 9 6 0.9336 5.3584 -1.4169 10 1 1.3759 4.8080 -2.2341 11 6 0.2104 6.5049 -1.6695 12 7 -0.3285 7.1750 -0.6744 13 14 -0.0035 7.1064 -3.4249 14 1 0.6945 6.1816 -4.3537 15 1 -1.4494 7.1472 -3.7614 16 1 0.5736 8.4685 -3.5554 17 6 3.3023 3.6763 -0.0042 18 17 4.0904 5.2231 -0.0108 19 6 4.0567 2.5166 0.0017 20 6 3.4311 1.2846 0.0010 21 6 4.2533 0.0216 0.0011 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2128 2.3199 -0.0005 26 1 -0.7110 3.8940 0.0531 27 1 -0.1382 4.3309 1.5521 28 1 -0.8369 7.9818 -0.8521 29 1 5.1352 2.5743 0.0024 30 1 4.4524 -0.2824 -1.0265 31 1 5.1970 0.2024 0.5157 32 1 3.7053 -0.7686 0.5142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:56 Heat of formation + Delta-G solvation = -41.666535 kcal Electronic energy + Delta-G solvation = -16901.257847 eV Core-core repulsion = 14080.016486 eV Total energy + Delta-G solvation = -2821.241360 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31058 -38.88136 -37.01727 -36.55251 -34.00061 -32.30807 -30.87581 -28.68614 -28.38473 -27.00571 -23.87185 -23.01595 -21.68142 -18.57915 -18.49529 -17.46769 -17.00781 -16.71121 -16.53371 -15.97163 -15.20026 -14.98602 -14.64103 -14.51025 -14.21225 -13.72081 -13.47879 -13.10214 -12.99317 -12.72975 -12.68429 -12.57357 -12.44416 -12.15590 -11.95204 -11.58865 -11.30296 -11.10464 -10.53735 -9.68934 -8.98748 -8.87667 -7.96515 -6.15752 0.29689 0.35921 1.39996 1.43026 1.45229 1.52759 2.34822 2.45248 2.69374 3.27329 3.80464 3.83739 4.18245 4.24663 4.37670 4.43102 4.44869 4.57284 4.64068 4.73204 4.87509 4.89821 5.11240 5.25581 5.30728 5.40068 5.62865 5.71666 5.76944 6.17657 6.37847 6.65224 7.08604 7.22632 7.54670 9.07104 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020866 B = 0.007932 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.592257 B = 3529.204498 C = 4233.392995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.207 4.207 5 C -0.060 4.060 6 C 0.259 3.741 7 H 0.029 0.971 8 N -0.818 5.818 9 C -0.524 4.524 10 H 0.039 0.961 11 C 0.040 3.960 12 N -0.878 5.878 13 Si 0.939 3.061 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.282 1.282 17 C -0.083 4.083 18 Cl -0.078 7.078 19 C -0.075 4.075 20 C -0.132 4.132 21 C -0.092 4.092 22 H 0.130 0.870 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.137 0.863 26 H 0.322 0.678 27 H 0.312 0.688 28 H 0.255 0.745 29 H 0.156 0.844 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -14.318 2.236 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.226 4.226 5 C -0.063 4.063 6 C 0.149 3.851 7 H 0.046 0.954 8 N -0.346 5.346 9 C -0.563 4.563 10 H 0.057 0.943 11 C -0.164 4.164 12 N -0.514 5.514 13 Si 0.766 3.234 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.110 4.110 18 Cl -0.049 7.049 19 C -0.094 4.094 20 C -0.133 4.133 21 C -0.149 4.149 22 H 0.148 0.852 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.155 0.845 26 H 0.136 0.864 27 H 0.123 0.877 28 H 0.064 0.936 29 H 0.174 0.826 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.317 -13.441 2.134 14.611 hybrid contribution -0.197 0.224 -0.761 0.817 sum 5.120 -13.217 1.373 14.240 Atomic orbital electron populations 1.23328 0.76887 1.05668 1.01767 1.86004 1.22907 1.25755 1.88508 1.18955 0.92249 0.84243 0.96538 1.21059 1.00709 0.90948 1.09853 1.21240 0.93569 0.98149 0.93336 1.17931 0.84757 0.87403 0.94982 0.95365 1.58991 1.21099 1.50649 1.03836 1.20882 1.34545 1.09441 0.91403 0.94304 1.25546 0.94941 0.96454 0.99428 1.70220 1.33329 1.16229 1.31650 0.85822 0.77683 0.78131 0.81798 1.19760 1.20579 1.20831 1.20833 0.92637 0.86966 1.10597 1.98319 1.79815 1.29684 1.97115 1.20955 1.00673 0.89050 0.98690 1.19407 0.90696 0.96492 1.06707 1.20573 0.98814 0.92509 1.02963 0.85236 0.92302 0.92850 0.84530 0.86423 0.87695 0.93630 0.82601 0.90708 0.89891 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.32 -8.63 9.54 -92.68 -0.88 -9.52 16 3 C 0.13 4.02 6.66 22.50 0.15 4.17 16 4 C -0.21 -7.52 8.26 22.36 0.18 -7.33 16 5 C -0.06 -2.53 4.98 -19.86 -0.10 -2.63 16 6 C 0.26 12.89 2.35 43.42 0.10 12.99 16 7 H 0.03 1.59 7.13 -2.38 -0.02 1.58 16 8 N -0.82 -37.89 8.12 -174.95 -1.42 -39.31 16 9 C -0.52 -28.84 8.71 25.60 0.22 -28.61 16 10 H 0.04 2.20 7.74 -2.91 -0.02 2.17 16 11 C 0.04 2.23 5.39 84.66 0.46 2.68 16 12 N -0.88 -51.49 12.76 21.45 0.27 -51.22 16 13 Si 0.94 44.40 29.54 68.60 2.03 46.43 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 C -0.08 -3.26 6.31 22.33 0.14 -3.12 16 18 Cl -0.08 -3.13 27.40 -2.72 -0.07 -3.20 16 19 C -0.08 -2.38 9.48 22.28 0.21 -2.17 16 20 C -0.13 -3.91 5.89 -19.77 -0.12 -4.02 16 21 C -0.09 -1.96 9.79 71.24 0.70 -1.26 16 22 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.06 1.17 7.66 -2.39 -0.02 1.15 16 24 H 0.05 1.16 7.66 -2.38 -0.02 1.14 16 25 H 0.14 4.65 4.53 -2.91 -0.01 4.64 16 26 H 0.32 13.93 7.20 -89.69 -0.65 13.28 16 27 H 0.31 12.91 9.06 -89.69 -0.81 12.09 16 28 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 32 H 0.07 1.48 7.53 -2.39 -0.02 1.46 16 Total: -1.00 -64.41 285.58 2.69 -61.73 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -0.30 Total: 22.92 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.06 Total: -27.82 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -1.15 Total: -90.53 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.88 Total: -9.52 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.07 Total: -3.20 kcal Total: -64.41 2.69 -61.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.061 kcal (2) G-P(sol) polarization free energy of solvation -64.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds