Wall clock time and date at job start Mon Mar 30 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48498 * 109.47290 * 240.00055 * 3 2 1 5 5 H 1.48502 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47203 * 119.99780 * 3 2 1 7 7 C 1.37872 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99797 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.64606 * 298.30215 * 9 7 2 11 11 C 1.54594 * 110.72378 * 61.45512 * 9 7 2 12 12 C 1.53993 * 105.13849 * 140.31720 * 11 9 7 13 13 N 1.47898 * 107.05862 * 1.22076 * 12 11 9 14 14 C 1.46898 * 111.00087 * 214.15596 * 13 12 11 15 15 C 1.50700 * 109.46985 * 69.87691 * 14 13 12 16 16 C 1.34522 * 125.78031 * 90.00323 * 15 14 13 17 17 C 1.41434 * 106.84705 * 180.24136 * 16 15 14 18 18 Cl 1.73599 * 126.58688 * 179.71339 * 17 16 15 19 19 C 1.34586 * 106.82652 * 359.57161 * 17 16 15 20 20 O 1.34292 * 125.77796 * 269.97534 * 15 14 13 21 21 C 1.48530 * 105.82123 * 334.67214 * 13 12 11 22 22 H 0.96998 * 119.99552 * 359.97438 * 1 2 3 23 23 H 1.08991 * 110.30947 * 21.39863 * 11 9 7 24 24 H 1.09004 * 110.30365 * 259.22938 * 11 9 7 25 25 H 1.09000 * 109.91396 * 241.86763 * 12 11 9 26 26 H 1.09002 * 110.08450 * 120.67238 * 12 11 9 27 27 H 1.09004 * 109.47487 * 309.87807 * 14 13 12 28 28 H 1.08998 * 109.47356 * 189.87366 * 14 13 12 29 29 H 1.08002 * 126.57192 * 359.97189 * 16 15 14 30 30 H 1.08005 * 125.79750 * 180.12089 * 19 17 16 31 31 H 1.09000 * 110.66736 * 157.64061 * 21 13 12 32 32 H 1.08999 * 110.66724 * 280.76971 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6404 -2.5904 0.8978 11 6 0.3787 -2.6271 -1.2704 12 6 0.5063 -4.1006 -1.6991 13 7 1.3766 -4.7675 -0.7065 14 6 2.1982 -5.8070 -1.3407 15 6 3.2329 -5.1597 -2.2246 16 6 4.4681 -4.7853 -1.8455 17 6 5.0924 -4.2208 -2.9821 18 17 6.6976 -3.5647 -3.0622 19 6 4.2040 -4.2929 -3.9906 20 8 3.0782 -4.8594 -3.5244 21 6 2.2270 -3.6956 -0.1286 22 1 -0.4849 0.8401 0.0004 23 1 0.7545 -1.9708 -2.0552 24 1 -0.6599 -2.3883 -1.0414 25 1 0.9581 -4.1614 -2.6892 26 1 -0.4756 -4.5738 -1.7096 27 1 1.5620 -6.4567 -1.9418 28 1 2.6957 -6.3969 -0.5709 29 1 4.8987 -4.8911 -0.8607 30 1 4.3665 -3.9490 -5.0014 31 1 2.6050 -3.9902 0.8504 32 1 3.0487 -3.4515 -0.8019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:22 Heat of formation + Delta-G solvation = 12.678012 kcal Electronic energy + Delta-G solvation = -17085.011266 eV Core-core repulsion = 14266.126462 eV Total energy + Delta-G solvation = -2818.884804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.62819 -38.12433 -36.57048 -33.58633 -32.65798 -31.34910 -28.91122 -28.03601 -25.60351 -23.79149 -21.75410 -20.93326 -19.86038 -19.46791 -17.30429 -16.69097 -15.94039 -15.16954 -14.75090 -14.59849 -14.07650 -13.59252 -13.31942 -13.14954 -12.79790 -12.28794 -12.18591 -12.11643 -11.43614 -11.06150 -11.01675 -10.71424 -10.70598 -10.56446 -10.28670 -9.70420 -9.37116 -9.21547 -8.77791 -8.41061 -8.32550 -7.97871 -6.01087 -4.04148 1.70167 2.13591 2.50925 3.11305 3.32552 3.36906 3.40066 4.42238 4.58415 4.81458 4.96834 5.23772 5.32730 5.44400 5.70724 5.79895 5.84078 6.00147 6.06176 6.24467 6.32250 6.41806 6.55428 6.82162 7.02954 7.13328 7.16532 7.49416 7.56877 7.66928 7.86557 8.03244 8.44564 8.97867 9.60015 11.08711 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.007934 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.113978 B = 3528.371205 C = 4631.440383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.035 0.965 11 C -0.101 4.101 12 C 0.027 3.973 13 N -0.507 5.507 14 C 0.121 3.879 15 C -0.017 4.017 16 C -0.190 4.190 17 C -0.125 4.125 18 Cl -0.043 7.043 19 C -0.027 4.027 20 O -0.160 6.160 21 C 0.026 3.974 22 H 0.260 0.740 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.155 0.845 30 H 0.207 0.793 31 H 0.064 0.936 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.160 -10.428 -6.515 14.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.035 3.965 10 H 0.054 0.946 11 C -0.139 4.139 12 C -0.101 4.101 13 N -0.228 5.228 14 C -0.009 4.009 15 C -0.070 4.070 16 C -0.211 4.211 17 C -0.153 4.153 18 Cl -0.014 7.014 19 C -0.097 4.097 20 O -0.055 6.055 21 C -0.101 4.101 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.173 0.827 30 H 0.223 0.777 31 H 0.082 0.918 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.528 -10.574 -6.265 13.916 hybrid contribution 1.387 1.596 -0.695 2.226 sum 7.915 -8.977 -6.960 13.845 Atomic orbital electron populations 1.69968 1.05839 1.26577 1.50251 1.24946 0.94822 0.98944 0.95047 0.86715 0.79663 0.83318 0.78674 1.20315 1.21301 1.20211 1.21032 0.92727 0.90344 1.51192 0.92728 1.19515 0.91966 0.90944 0.94076 0.94645 1.22299 1.01450 0.90384 0.99795 1.23095 0.96365 0.97456 0.93177 1.65165 1.17406 1.12621 1.27651 1.21249 0.91001 0.95401 0.93205 1.23670 0.97489 1.03504 0.82303 1.21398 0.94500 1.05554 0.99661 1.21117 0.89856 1.08213 0.96085 1.98328 1.20029 1.84627 1.98456 1.23771 0.83901 1.02417 0.99566 1.84184 1.35692 1.60967 1.24646 1.23689 0.96664 0.91624 0.98113 0.92997 0.92813 0.92039 0.94569 0.91717 0.89559 0.87781 0.82697 0.77670 0.91791 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 12.44 55.43 0.69 -24.90 16 2 C 0.06 1.79 5.33 -17.82 -0.10 1.70 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.18 8.42 -34.44 -0.29 -14.47 16 8 H 0.05 1.50 7.78 -52.49 -0.41 1.09 16 9 C 0.05 1.36 2.99 -89.91 -0.27 1.09 16 10 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.10 -2.38 5.50 -25.38 -0.14 -2.52 16 12 C 0.03 0.52 6.46 -2.76 -0.02 0.50 16 13 N -0.51 -9.27 5.54 -231.90 -1.28 -10.56 16 14 C 0.12 1.75 6.02 -4.98 -0.03 1.72 16 15 C -0.02 -0.27 4.90 -35.62 -0.17 -0.44 16 16 C -0.19 -2.93 8.84 -39.68 -0.35 -3.28 16 17 C -0.12 -1.86 6.74 -39.66 -0.27 -2.13 16 18 Cl -0.04 -0.59 29.32 -51.86 -1.52 -2.11 16 19 C -0.03 -0.38 12.08 29.44 0.36 -0.02 16 20 O -0.16 -2.50 9.68 5.55 0.05 -2.44 16 21 C 0.03 0.53 5.59 -1.90 -0.01 0.52 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.05 1.37 7.84 -51.93 -0.41 0.96 16 24 H 0.06 1.53 8.05 -51.93 -0.42 1.11 16 25 H 0.04 0.68 6.27 -51.93 -0.33 0.36 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.21 2.10 8.06 -52.48 -0.42 1.68 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 1.14 4.83 -51.93 -0.25 0.89 16 LS Contribution 280.56 15.07 4.23 4.23 Total: -1.00 -29.19 280.56 -8.04 -37.23 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.90 Total: -0.61 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -1.29 Total: -17.34 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.59 Total: -35.46 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: 0.05 Total: -2.44 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.52 Total: -2.11 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.19 -8.04 -37.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.911 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds