Wall clock time and date at job start Mon Mar 30 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48498 * 109.47290 * 240.00055 * 3 2 1 5 5 H 1.48502 * 109.46971 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47203 * 119.99780 * 3 2 1 7 7 C 1.37872 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00270 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99797 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.64606 * 298.30215 * 9 7 2 11 11 C 1.54594 * 110.72378 * 61.45512 * 9 7 2 12 12 C 1.53993 * 105.13849 * 140.31720 * 11 9 7 13 13 N 1.47898 * 107.05862 * 1.22076 * 12 11 9 14 14 C 1.46898 * 111.00087 * 214.15596 * 13 12 11 15 15 C 1.50700 * 109.46985 * 69.87691 * 14 13 12 16 16 C 1.34522 * 125.78031 * 90.00323 * 15 14 13 17 17 C 1.41434 * 106.84705 * 180.24136 * 16 15 14 18 18 Cl 1.73599 * 126.58688 * 179.71339 * 17 16 15 19 19 C 1.34586 * 106.82652 * 359.57161 * 17 16 15 20 20 O 1.34292 * 125.77796 * 269.97534 * 15 14 13 21 21 C 1.48530 * 105.82123 * 334.67214 * 13 12 11 22 22 H 0.96998 * 119.99552 * 359.97438 * 1 2 3 23 23 H 1.08991 * 110.30947 * 21.39863 * 11 9 7 24 24 H 1.09004 * 110.30365 * 259.22938 * 11 9 7 25 25 H 1.09000 * 109.91396 * 241.86763 * 12 11 9 26 26 H 1.09002 * 110.08450 * 120.67238 * 12 11 9 27 27 H 1.09004 * 109.47487 * 309.87807 * 14 13 12 28 28 H 1.08998 * 109.47356 * 189.87366 * 14 13 12 29 29 H 1.08002 * 126.57192 * 359.97189 * 16 15 14 30 30 H 1.08005 * 125.79750 * 180.12089 * 19 17 16 31 31 H 1.09000 * 110.66736 * 157.64061 * 21 13 12 32 32 H 1.08999 * 110.66724 * 280.76971 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6404 -2.5904 0.8978 11 6 0.3787 -2.6271 -1.2704 12 6 0.5063 -4.1006 -1.6991 13 7 1.3766 -4.7675 -0.7065 14 6 2.1982 -5.8070 -1.3407 15 6 3.2329 -5.1597 -2.2246 16 6 4.4681 -4.7853 -1.8455 17 6 5.0924 -4.2208 -2.9821 18 17 6.6976 -3.5647 -3.0622 19 6 4.2040 -4.2929 -3.9906 20 8 3.0782 -4.8594 -3.5244 21 6 2.2270 -3.6956 -0.1286 22 1 -0.4849 0.8401 0.0004 23 1 0.7545 -1.9708 -2.0552 24 1 -0.6599 -2.3883 -1.0414 25 1 0.9581 -4.1614 -2.6892 26 1 -0.4756 -4.5738 -1.7096 27 1 1.5620 -6.4567 -1.9418 28 1 2.6957 -6.3969 -0.5709 29 1 4.8987 -4.8911 -0.8607 30 1 4.3665 -3.9490 -5.0014 31 1 2.6050 -3.9902 0.8504 32 1 3.0487 -3.4515 -0.8019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925501.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:22 Heat of formation + Delta-G solvation = -5.524892 kcal Electronic energy + Delta-G solvation = -17085.800603 eV Core-core repulsion = 14266.126462 eV Total energy + Delta-G solvation = -2819.674141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.76699 -39.71417 -37.65542 -35.40176 -33.93567 -32.97996 -30.44487 -29.65636 -27.22716 -25.51098 -22.92606 -22.28935 -21.36098 -21.21506 -18.55237 -18.41461 -17.42719 -16.70158 -16.44819 -16.10496 -15.59751 -14.93836 -14.63878 -14.41343 -14.13906 -13.98882 -13.68264 -13.32753 -13.20277 -12.99404 -12.62999 -12.44277 -12.29848 -12.10539 -11.83582 -11.59965 -11.12471 -10.88235 -10.54445 -10.43859 -9.57543 -9.39467 -8.14537 -6.24265 0.58075 1.03829 1.36539 1.39355 1.40156 1.47872 2.02974 2.40942 3.15362 3.21248 3.66942 3.90147 4.08435 4.10071 4.28957 4.38834 4.56793 4.65934 4.70568 4.78031 4.87717 4.97999 5.05934 5.18643 5.24304 5.31082 5.60309 5.71923 5.83483 5.94819 6.02745 6.14166 6.37963 6.85188 7.43256 8.94696 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.007934 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.113978 B = 3528.371205 C = 4631.440383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.042 3.958 10 H 0.003 0.997 11 C -0.092 4.092 12 C 0.039 3.961 13 N -0.507 5.507 14 C 0.121 3.879 15 C -0.031 4.031 16 C -0.198 4.198 17 C -0.147 4.147 18 Cl -0.036 7.036 19 C -0.021 4.021 20 O -0.171 6.171 21 C 0.042 3.958 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.161 0.839 30 H 0.239 0.761 31 H 0.072 0.928 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 -11.230 -7.237 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.774 3.226 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.023 3.977 10 H 0.021 0.979 11 C -0.131 4.131 12 C -0.089 4.089 13 N -0.229 5.229 14 C -0.007 4.007 15 C -0.083 4.083 16 C -0.219 4.219 17 C -0.175 4.175 18 Cl -0.008 7.008 19 C -0.090 4.090 20 O -0.066 6.066 21 C -0.085 4.085 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.148 0.852 29 H 0.179 0.821 30 H 0.255 0.745 31 H 0.090 0.910 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.524 -11.393 -6.985 15.336 hybrid contribution 1.113 1.831 -0.488 2.197 sum 8.637 -9.563 -7.473 14.896 Atomic orbital electron populations 1.70089 1.07151 1.27290 1.51061 1.25705 0.95627 1.02241 0.94787 0.85752 0.78529 0.79395 0.78880 1.19851 1.20841 1.19462 1.21363 0.92768 0.91808 1.50967 0.93090 1.19483 0.92786 0.92173 0.93226 0.97915 1.22064 0.99460 0.93198 0.98366 1.22946 0.97874 0.94472 0.93623 1.65113 1.17662 1.12086 1.28029 1.21427 0.91051 0.94199 0.94046 1.23754 0.97795 1.04211 0.82549 1.21620 0.94786 1.05328 1.00179 1.21321 0.90604 1.09081 0.96460 1.98326 1.19463 1.84546 1.98444 1.24449 0.82982 1.00827 1.00691 1.84174 1.36405 1.61233 1.24805 1.23398 0.95629 0.90737 0.98784 0.93027 0.95430 0.94309 0.93731 0.89817 0.87271 0.85221 0.82097 0.74489 0.90985 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.94 12.44 21.45 0.27 -53.68 16 2 C 0.02 0.88 5.33 84.65 0.45 1.33 16 3 Si 0.95 44.28 29.54 68.60 2.03 46.31 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.53 -29.67 8.42 25.60 0.22 -29.45 16 8 H 0.05 2.81 7.78 -2.91 -0.02 2.79 16 9 C 0.04 2.17 2.99 -10.33 -0.03 2.14 16 10 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 11 C -0.09 -4.43 5.50 31.47 0.17 -4.26 16 12 C 0.04 1.44 6.46 86.45 0.56 2.00 16 13 N -0.51 -17.61 5.54 -887.59 -4.91 -22.52 16 14 C 0.12 3.14 6.02 85.56 0.51 3.65 16 15 C -0.03 -0.90 4.90 24.83 0.12 -0.78 16 16 C -0.20 -5.74 8.84 22.21 0.20 -5.55 16 17 C -0.15 -4.12 6.74 22.22 0.15 -3.97 16 18 Cl -0.04 -0.94 29.32 -2.72 -0.08 -1.01 16 19 C -0.02 -0.53 12.08 66.98 0.81 0.28 16 20 O -0.17 -4.95 9.68 -3.06 -0.03 -4.98 16 21 C 0.04 1.70 5.59 86.65 0.48 2.18 16 22 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 23 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 24 H 0.04 1.98 8.05 -2.38 -0.02 1.96 16 25 H 0.04 1.59 6.27 -2.39 -0.01 1.58 16 26 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.11 2.38 8.08 -2.38 -0.02 2.36 16 28 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.24 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.05 2.09 4.83 -2.39 -0.01 2.08 16 Total: -1.00 -62.92 280.56 2.03 -60.88 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.12 Total: 7.41 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 3.64 Total: -32.41 kcal Atomic # 7 Polarization: -71.55 SS G_CDS: -4.65 Total: -76.19 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.03 Total: -4.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.01 kcal Total: -62.92 2.03 -60.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925501.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.360 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds