Wall clock time and date at job start Mon Mar 30 2020 06:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99814 * 2 1 4 4 H 1.48507 * 109.46813 * 269.99639 * 3 2 1 5 5 H 1.48498 * 109.47208 * 29.99633 * 3 2 1 6 6 H 1.48495 * 109.47074 * 150.00216 * 3 2 1 7 7 C 1.37870 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00174 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99848 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.46136 * 60.95817 * 9 7 2 11 11 C 1.54381 * 110.41376 * 298.54641 * 9 7 2 12 12 C 1.54257 * 105.14978 * 217.42278 * 11 9 7 13 13 C 1.54377 * 105.06382 * 359.94367 * 12 11 9 14 14 N 1.48567 * 104.59159 * 23.85582 * 13 12 11 15 15 C 1.46900 * 110.99718 * 200.95714 * 14 13 12 16 16 C 1.50696 * 109.47362 * 290.12389 * 15 14 13 17 17 O 1.34372 * 125.80285 * 269.69178 * 16 15 14 18 18 C 1.34296 * 109.48271 * 179.85877 * 17 16 15 19 19 C 1.34518 * 108.44192 * 0.40792 * 18 17 16 20 20 C 1.34587 * 125.79588 * 90.00482 * 16 15 14 21 21 Cl 1.73598 * 126.58805 * 359.97377 * 20 16 15 22 22 H 0.97010 * 120.00081 * 0.02562 * 1 2 3 23 23 H 1.09002 * 110.32526 * 98.47097 * 11 9 7 24 24 H 1.08998 * 110.32190 * 336.36738 * 11 9 7 25 25 H 1.08995 * 110.32672 * 118.84838 * 12 11 9 26 26 H 1.09009 * 110.32136 * 241.05045 * 12 11 9 27 27 H 1.08999 * 110.41555 * 142.63458 * 13 12 11 28 28 H 1.09001 * 110.41672 * 265.07801 * 13 12 11 29 29 H 1.08999 * 109.47382 * 50.12750 * 15 14 13 30 30 H 1.09006 * 109.46597 * 170.12515 * 15 14 13 31 31 H 1.08004 * 125.77870 * 180.15717 * 18 17 16 32 32 H 1.08003 * 126.57521 * 179.71329 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 1 3.8922 -0.6980 0.8940 11 6 4.0504 -0.5029 -1.2698 12 6 5.2994 -1.3143 -1.6711 13 6 5.4128 -2.4282 -0.6083 14 7 4.0325 -2.5845 -0.0812 15 6 4.0435 -3.2223 1.2421 16 6 4.4503 -4.6663 1.1004 17 8 3.6171 -5.7023 0.9050 18 6 4.3273 -6.8390 0.8228 19 6 5.6298 -6.5390 0.9749 20 6 5.7096 -5.1383 1.1540 21 17 7.1543 -4.2067 1.3961 22 1 -0.4851 0.8401 -0.0004 23 1 4.3235 0.5298 -1.0524 24 1 3.3052 -0.5374 -2.0644 25 1 5.1666 -1.7485 -2.6620 26 1 6.1857 -0.6799 -1.6506 27 1 5.7524 -3.3573 -1.0660 28 1 6.0920 -2.1256 0.1887 29 1 4.7537 -2.7064 1.8882 30 1 3.0469 -3.1669 1.6802 31 1 3.9212 -7.8274 0.6656 32 1 6.4560 -7.2345 0.9633 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260014856.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:33 Heat of formation + Delta-G solvation = 21.183402 kcal Electronic energy + Delta-G solvation = -17058.933062 eV Core-core repulsion = 14240.417079 eV Total energy + Delta-G solvation = -2818.515982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.51406 -38.22082 -36.50787 -33.03116 -32.54021 -32.19760 -29.21231 -28.73823 -25.06309 -23.89264 -21.79331 -20.78675 -20.05077 -19.68281 -17.33379 -16.67843 -16.17517 -15.17826 -14.92433 -14.67556 -13.69258 -13.61256 -13.49153 -13.35960 -12.76156 -12.68249 -12.22881 -11.99743 -11.68866 -11.25401 -11.05977 -10.91160 -10.63483 -10.43384 -10.16214 -9.85098 -9.77968 -9.52988 -9.16781 -8.57805 -8.34885 -7.63805 -6.07942 -4.06494 1.74779 2.20189 2.47433 3.19383 3.26799 3.34776 3.35852 4.38702 4.66324 4.86124 4.97696 5.18361 5.31669 5.46417 5.54385 5.67331 5.76416 5.81838 5.93454 6.11604 6.20931 6.26209 6.34933 6.39729 6.59740 6.70650 6.73886 7.12281 7.16032 7.51039 7.73475 7.84057 8.59504 9.01573 9.53613 11.05008 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.006908 C = 0.006068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.632764 B = 4052.440438 C = 4613.022620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.500 4.500 8 H 0.083 0.917 9 C 0.173 3.827 10 H 0.012 0.988 11 C -0.133 4.133 12 C -0.122 4.122 13 C 0.029 3.971 14 N -0.490 5.490 15 C 0.118 3.882 16 C 0.049 3.951 17 O -0.151 6.151 18 C -0.036 4.036 19 C -0.204 4.204 20 C -0.142 4.142 21 Cl -0.043 7.043 22 H 0.264 0.736 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.207 0.793 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.561 -9.473 1.824 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.538 4.538 8 H 0.101 0.899 9 C 0.066 3.934 10 H 0.030 0.970 11 C -0.172 4.172 12 C -0.160 4.160 13 C -0.099 4.099 14 N -0.215 5.215 15 C -0.010 4.010 16 C -0.004 4.004 17 O -0.046 6.046 18 C -0.104 4.104 19 C -0.224 4.224 20 C -0.171 4.171 21 Cl -0.014 7.014 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.223 0.777 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.857 -9.578 1.488 15.315 hybrid contribution 1.332 1.311 0.486 1.931 sum 13.189 -8.266 1.974 15.690 Atomic orbital electron populations 1.69884 1.06096 1.26856 1.50750 1.24862 0.94647 0.98625 0.94735 0.87019 0.79943 0.84163 0.78580 1.20147 1.21896 1.19253 1.20841 0.87725 0.94824 1.50389 0.89906 1.20729 0.96779 0.83211 0.92677 0.97014 1.22792 0.96431 0.97239 1.00729 1.22267 0.98071 0.96858 0.98815 1.23205 0.91102 0.98378 0.97236 1.65384 1.15805 1.20487 1.19791 1.20686 1.03517 0.83708 0.93079 1.22452 0.86704 0.90379 1.00838 1.84222 1.36515 1.14697 1.69119 1.23932 0.90335 0.90137 1.05989 1.21529 0.97784 0.93986 1.09096 1.20823 0.88255 0.92671 1.15323 1.98314 1.35213 1.72153 1.95735 0.92592 0.93407 0.90469 0.91758 0.92634 0.91397 0.94316 0.91881 0.87578 0.77659 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.98 16 3 Si 0.87 21.27 24.68 -169.99 -4.19 17.07 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.23 6.36 56.52 0.36 -5.87 16 7 C -0.50 -13.83 8.98 -34.44 -0.31 -14.14 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 9 C 0.17 4.04 1.74 -67.13 -0.12 3.93 16 10 H 0.01 0.29 7.16 -51.93 -0.37 -0.08 16 11 C -0.13 -2.87 4.80 -25.35 -0.12 -2.99 16 12 C -0.12 -2.18 7.00 -25.35 -0.18 -2.35 16 13 C 0.03 0.52 4.86 -2.18 -0.01 0.51 16 14 N -0.49 -10.25 5.03 -224.80 -1.13 -11.38 16 15 C 0.12 2.22 5.13 -4.98 -0.03 2.20 16 16 C 0.05 0.84 6.46 -35.60 -0.23 0.61 16 17 O -0.15 -2.48 10.65 5.54 0.06 -2.42 16 18 C -0.04 -0.44 12.09 29.42 0.36 -0.08 16 19 C -0.20 -2.57 10.91 -39.68 -0.43 -3.01 16 20 C -0.14 -2.14 6.23 -39.66 -0.25 -2.38 16 21 Cl -0.04 -0.60 26.84 -51.86 -1.39 -1.99 16 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.05 1.00 5.75 -51.93 -0.30 0.70 16 24 H 0.08 1.77 7.85 -51.93 -0.41 1.36 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 27 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16 28 H 0.04 0.66 6.68 -51.93 -0.35 0.32 16 29 H 0.06 1.11 7.64 -51.93 -0.40 0.71 16 30 H 0.11 2.12 7.87 -51.93 -0.41 1.71 16 31 H 0.21 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -30.17 275.04 -7.09 -37.26 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.93 Total: -0.65 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.41 Total: -15.74 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.36 Total: -37.68 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: 0.06 Total: -2.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.19 Total: 17.07 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.39 Total: -1.99 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.17 -7.09 -37.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014856.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.439 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds