Wall clock time and date at job start Mon Mar 30 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48501 * 109.46886 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47405 * 299.99768 * 3 2 1 6 6 H 1.48506 * 109.47098 * 60.00132 * 3 2 1 7 7 C 1.37873 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00583 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.64339 * 298.30484 * 9 7 2 11 11 C 1.54602 * 110.72089 * 61.44897 * 9 7 2 12 12 C 1.53995 * 105.13479 * 140.31966 * 11 9 7 13 13 N 1.47900 * 107.06086 * 1.22508 * 12 11 9 14 14 C 1.46897 * 110.99969 * 214.15568 * 13 12 11 15 15 C 1.50701 * 109.47413 * 69.87302 * 14 13 12 16 16 C 1.34493 * 125.77795 * 89.99336 * 15 14 13 17 17 C 1.41402 * 106.85135 * 179.77664 * 16 15 14 18 18 C 1.34649 * 106.83388 * 0.41026 * 17 16 15 19 19 Cl 1.73599 * 125.80617 * 179.85708 * 18 17 16 20 20 O 1.34307 * 108.39432 * 359.59130 * 18 17 16 21 21 C 1.48533 * 105.81879 * 334.66767 * 13 12 11 22 22 H 0.97007 * 119.99744 * 359.97438 * 1 2 3 23 23 H 1.08992 * 110.31111 * 21.40614 * 11 9 7 24 24 H 1.09000 * 110.31068 * 259.22956 * 11 9 7 25 25 H 1.09003 * 109.91784 * 241.87184 * 12 11 9 26 26 H 1.08998 * 110.08288 * 120.67520 * 12 11 9 27 27 H 1.09004 * 109.47154 * 309.87503 * 14 13 12 28 28 H 1.08997 * 109.47250 * 189.87726 * 14 13 12 29 29 H 1.08006 * 126.57009 * 359.97438 * 16 15 14 30 30 H 1.08008 * 126.58541 * 180.30577 * 17 16 15 31 31 H 1.09002 * 110.66325 * 157.63689 * 21 13 12 32 32 H 1.08993 * 110.67201 * 280.77090 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6396 -2.5900 0.8984 11 6 0.3794 -2.6276 -1.2699 12 6 0.5074 -4.1014 -1.6980 13 7 1.3769 -4.7679 -0.7043 14 6 2.1990 -5.8076 -1.3376 15 6 3.2344 -5.1607 -2.2210 16 6 4.4690 -4.7862 -1.8411 17 6 5.0979 -4.2324 -2.9800 18 6 4.2057 -4.2934 -3.9866 19 17 4.4681 -3.7409 -5.6113 20 8 3.0802 -4.8599 -3.5216 21 6 2.2270 -3.6957 -0.1263 22 1 -0.4850 0.8401 0.0004 23 1 0.7558 -1.9717 -2.0548 24 1 -0.6593 -2.3888 -1.0419 25 1 0.9600 -4.1626 -2.6877 26 1 -0.4744 -4.5745 -1.7090 27 1 1.5631 -6.4575 -1.9389 28 1 2.6958 -6.3973 -0.5672 29 1 4.8987 -4.8914 -0.8559 30 1 6.1009 -3.8349 -3.0321 31 1 2.6041 -3.9900 0.8531 32 1 3.0491 -3.4519 -0.7990 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260058027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:25 Heat of formation + Delta-G solvation = 0.318292 kcal Electronic energy + Delta-G solvation = -17088.908681 eV Core-core repulsion = 14269.487920 eV Total energy + Delta-G solvation = -2819.420761 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.75728 -39.72767 -38.00450 -35.39734 -34.22346 -33.02868 -30.37780 -29.58825 -27.16395 -25.45196 -23.06172 -22.23115 -21.37387 -21.17899 -18.70949 -18.51093 -17.54749 -16.78533 -16.53112 -16.10602 -15.59130 -14.84630 -14.57394 -14.32241 -14.04039 -13.92184 -13.70078 -13.16770 -13.13921 -13.01319 -12.63869 -12.44270 -12.34222 -12.18924 -12.10360 -11.61636 -11.13496 -10.98630 -10.73511 -10.51203 -9.54848 -9.33998 -8.14513 -6.24182 0.17150 0.48577 1.38079 1.40055 1.49161 1.51137 2.38832 2.41829 3.15883 3.22016 3.78416 3.91586 4.07896 4.14995 4.35122 4.52837 4.57882 4.66129 4.71229 4.83105 4.84922 4.89255 5.06385 5.22742 5.29213 5.38063 5.60260 5.70375 5.82125 5.92268 6.00406 6.12881 6.37668 6.86013 7.43572 8.95197 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019019 B = 0.007372 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.827110 B = 3797.398824 C = 4578.278350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.042 3.958 10 H 0.004 0.996 11 C -0.092 4.092 12 C 0.038 3.962 13 N -0.506 5.506 14 C 0.121 3.879 15 C -0.030 4.030 16 C -0.195 4.195 17 C -0.173 4.173 18 C -0.003 4.003 19 Cl 0.026 6.974 20 O -0.185 6.185 21 C 0.041 3.959 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.138 0.862 29 H 0.176 0.824 30 H 0.178 0.822 31 H 0.078 0.922 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 -11.219 -6.588 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.023 3.977 10 H 0.022 0.978 11 C -0.131 4.131 12 C -0.090 4.090 13 N -0.227 5.227 14 C -0.007 4.007 15 C -0.082 4.082 16 C -0.215 4.215 17 C -0.193 4.193 18 C -0.080 4.080 19 Cl 0.055 6.945 20 O -0.083 6.083 21 C -0.086 4.086 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.156 0.844 29 H 0.193 0.807 30 H 0.196 0.804 31 H 0.096 0.904 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.055 -11.388 -6.495 15.386 hybrid contribution 0.667 1.804 -0.928 2.135 sum 8.721 -9.584 -7.423 14.933 Atomic orbital electron populations 1.70109 1.07246 1.27133 1.51275 1.25740 0.95638 1.02392 0.94836 0.85616 0.79307 0.79893 0.77569 1.18859 1.20953 1.20403 1.21448 0.92941 0.91698 1.50621 0.92717 1.19501 0.92820 0.92362 0.93053 0.97765 1.22063 0.99533 0.92986 0.98484 1.22938 0.97886 0.94680 0.93454 1.65129 1.17699 1.12146 1.27758 1.21497 0.91069 0.94197 0.93949 1.24039 0.99104 1.04277 0.80770 1.21917 0.94238 1.04409 1.00971 1.21855 1.01759 1.04961 0.90771 1.22738 0.87744 1.07209 0.90264 1.98402 1.94146 1.86733 1.15262 1.83965 1.36601 1.61834 1.25930 1.23430 0.95608 0.90531 0.99037 0.93101 0.95714 0.94343 0.94337 0.89913 0.87807 0.84414 0.80705 0.80427 0.90388 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 12.44 21.45 0.27 -53.91 16 2 C 0.01 0.72 5.33 84.65 0.45 1.18 16 3 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.53 -29.33 8.42 25.60 0.22 -29.12 16 8 H 0.05 2.97 7.78 -2.91 -0.02 2.95 16 9 C 0.04 2.12 2.99 -10.33 -0.03 2.09 16 10 H 0.00 0.23 8.14 -2.38 -0.02 0.22 16 11 C -0.09 -4.49 5.51 31.48 0.17 -4.31 16 12 C 0.04 1.47 6.46 86.45 0.56 2.03 16 13 N -0.51 -17.61 5.54 -887.58 -4.91 -22.53 16 14 C 0.12 3.17 6.02 85.56 0.51 3.68 16 15 C -0.03 -0.88 4.90 24.83 0.12 -0.76 16 16 C -0.20 -5.31 8.84 22.19 0.20 -5.12 16 17 C -0.17 -4.69 10.88 22.23 0.24 -4.45 16 18 C 0.00 -0.10 7.93 67.00 0.53 0.43 16 19 Cl 0.03 0.66 29.30 -2.72 -0.08 0.58 16 20 O -0.19 -6.03 9.68 -3.22 -0.03 -6.06 16 21 C 0.04 1.64 5.59 86.65 0.48 2.13 16 22 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 23 H 0.02 1.30 7.84 -2.39 -0.02 1.28 16 24 H 0.04 1.99 8.05 -2.39 -0.02 1.97 16 25 H 0.04 1.47 6.27 -2.39 -0.01 1.45 16 26 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 27 H 0.10 2.37 8.08 -2.38 -0.02 2.35 16 28 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 30 H 0.18 3.82 8.06 -2.91 -0.02 3.79 16 31 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.05 2.12 4.83 -2.39 -0.01 2.10 16 Total: -1.00 -62.79 280.54 1.85 -60.95 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.12 Total: 7.07 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.46 Total: -32.22 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -4.65 Total: -76.43 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.03 Total: -6.06 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.08 Total: 0.58 kcal Total: -62.79 1.85 -60.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260058027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.264 kcal (2) G-P(sol) polarization free energy of solvation -62.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds