Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99888 * 2 1 4 4 C 1.38770 * 120.04702 * 269.72512 * 3 2 1 5 5 C 1.50697 * 120.01244 * 359.97438 * 4 3 2 6 6 C 1.38129 * 119.96683 * 179.74624 * 4 3 2 7 7 C 1.38264 * 120.07311 * 0.52372 * 6 4 3 8 8 C 1.38365 * 120.09643 * 359.73106 * 7 6 4 9 9 Cl 1.73597 * 119.98706 * 179.97438 * 8 7 6 10 10 C 1.38286 * 120.02689 * 0.02562 * 8 7 6 11 11 C 1.50707 * 120.02915 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46401 * 191.13968 * 11 10 8 13 13 N 1.46902 * 109.47218 * 311.13521 * 11 10 8 14 14 C 1.50693 * 109.47461 * 71.14041 * 11 10 8 15 15 H 1.08001 * 119.99876 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00440 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00051 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99333 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.47043 * 90.00429 * 18 16 14 20 20 H 1.48507 * 109.46974 * 209.99879 * 18 16 14 21 21 H 1.48497 * 109.47347 * 329.99824 * 18 16 14 22 22 H 1.08998 * 109.47079 * 59.99996 * 1 2 3 23 23 H 1.09001 * 109.47449 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47160 * 300.00383 * 1 2 3 25 25 H 1.09000 * 109.47161 * 90.00449 * 5 4 3 26 26 H 1.09002 * 109.46828 * 210.00410 * 5 4 3 27 27 H 1.08994 * 109.47245 * 329.99986 * 5 4 3 28 28 H 1.08003 * 119.96043 * 180.25580 * 6 4 3 29 29 H 1.08001 * 119.95313 * 179.74542 * 7 6 4 30 30 H 1.00904 * 110.99152 * 75.91276 * 13 11 10 31 31 H 1.00894 * 111.00268 * 199.86606 * 13 11 10 32 32 H 0.97010 * 119.99486 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3665 1.8274 -1.2012 5 6 2.0312 1.1541 -2.5070 6 6 2.9888 3.0605 -1.1993 7 6 3.3025 3.6764 -0.0018 8 6 2.9889 3.0619 1.1975 9 17 3.3847 3.8375 2.6994 10 6 2.3614 1.8296 1.2004 11 6 2.0193 1.1605 2.5067 12 1 1.7175 0.1300 2.3189 13 7 3.1957 1.1736 3.3864 14 6 0.8877 1.9024 3.1700 15 1 0.4593 2.7718 2.6935 16 6 0.3992 1.4713 4.3851 17 7 -0.5887 2.1186 4.9637 18 14 1.1407 -0.0320 5.2095 19 1 2.2607 0.3880 6.0896 20 1 0.1015 -0.7140 6.0222 21 1 1.6492 -0.9651 4.1723 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.0345 1.4580 -2.8271 26 1 2.7601 1.4449 -3.2634 27 1 2.0564 0.0725 -2.3751 28 1 3.2345 3.5421 -2.1343 29 1 3.7928 4.6387 -0.0026 30 1 3.3401 2.0900 3.7833 31 1 3.1141 0.4750 4.1098 32 1 -0.9321 1.8154 5.8188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260091792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = -14.655421 kcal Electronic energy + Delta-G solvation = -17402.148012 eV Core-core repulsion = 14582.077941 eV Total energy + Delta-G solvation = -2820.070070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81638 -37.01395 -35.77647 -34.93525 -32.15624 -31.44987 -29.67988 -27.08008 -26.10364 -25.67213 -22.99054 -21.41956 -19.64735 -17.44131 -17.10990 -16.15809 -15.34746 -15.19842 -14.64965 -14.38093 -13.82753 -13.45484 -13.29111 -13.10905 -12.53832 -12.41524 -12.34154 -11.91988 -11.56645 -11.34593 -11.15891 -11.00184 -10.61444 -10.45816 -10.22553 -9.86376 -9.49615 -9.27760 -8.74785 -8.16500 -7.92836 -7.44939 -6.21547 -4.22954 1.52494 1.75171 2.85308 3.15783 3.28249 3.28621 3.80384 4.25381 4.44261 5.05128 5.11391 5.22189 5.41805 5.59288 5.68894 5.74062 5.79881 5.87454 5.90802 6.06747 6.23649 6.24355 6.34254 6.53988 6.72343 6.81383 6.97430 7.20621 7.47959 7.97877 8.16130 8.31958 8.63020 8.84357 9.37891 10.90756 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.010253 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.872410 B = 2730.176348 C = 3538.506533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.331 6.331 3 C 0.099 3.901 4 C -0.108 4.108 5 C -0.106 4.106 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.010 4.010 9 Cl -0.051 7.051 10 C -0.025 4.025 11 C 0.207 3.793 12 H 0.057 0.943 13 N -0.856 5.856 14 C -0.533 4.533 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.889 5.889 18 Si 0.866 3.134 19 H -0.275 1.275 20 H -0.291 1.291 21 H -0.260 1.260 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.342 0.658 31 H 0.312 0.688 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -0.131 -10.919 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.248 6.248 3 C 0.054 3.946 4 C -0.109 4.109 5 C -0.163 4.163 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.038 4.038 9 Cl -0.022 7.022 10 C -0.027 4.027 11 C 0.098 3.902 12 H 0.075 0.925 13 N -0.396 5.396 14 C -0.573 4.573 15 H 0.094 0.906 16 C -0.127 4.127 17 N -0.526 5.526 18 Si 0.695 3.305 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.185 1.185 22 H 0.056 0.944 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.162 0.838 31 H 0.127 0.873 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.370 -0.414 -11.258 12.480 hybrid contribution -0.563 -0.216 1.536 1.650 sum 4.806 -0.630 -9.722 10.864 Atomic orbital electron populations 1.23033 0.78910 1.02687 1.01552 1.85908 1.19956 1.24690 1.94199 1.18148 0.98890 0.86772 0.90762 1.20130 1.00843 0.95000 0.94901 1.20635 1.01192 1.01053 0.93403 1.20609 1.01196 0.94775 0.97279 1.20952 1.01725 1.00400 0.90840 1.20479 1.02024 0.94329 0.86924 1.98288 1.92323 1.79070 1.32535 1.20330 0.93793 0.92103 0.96439 1.18390 0.88392 0.96717 0.86697 0.92527 1.59804 1.43083 1.11519 1.25216 1.21464 1.16829 1.14057 1.04906 0.90577 1.24934 0.94623 0.96150 0.96954 1.69889 1.25743 1.39739 1.17231 0.87110 0.78891 0.84261 0.80217 1.20153 1.21783 1.18507 0.94353 0.89502 0.91463 0.91699 0.91819 0.91016 0.85603 0.85519 0.83850 0.87269 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.13 101.05 1.12 1.66 16 2 O -0.33 -6.34 8.27 -19.42 -0.16 -6.50 16 3 C 0.10 1.94 5.67 -39.22 -0.22 1.71 16 4 C -0.11 -1.76 5.89 -104.47 -0.62 -2.38 16 5 C -0.11 -1.34 9.79 36.00 0.35 -0.99 16 6 C -0.12 -1.80 9.70 -39.61 -0.38 -2.18 16 7 C -0.12 -1.99 9.83 -39.53 -0.39 -2.38 16 8 C -0.01 -0.21 6.14 -39.52 -0.24 -0.45 16 9 Cl -0.05 -1.02 24.20 -51.86 -1.26 -2.28 16 10 C -0.02 -0.54 4.91 -104.44 -0.51 -1.05 16 11 C 0.21 5.02 2.28 -70.02 -0.16 4.86 16 12 H 0.06 1.44 6.13 -51.93 -0.32 1.12 16 13 N -0.86 -20.01 8.44 -6.65 -0.06 -20.07 16 14 C -0.53 -14.42 8.20 -34.44 -0.28 -14.71 16 15 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 18 Si 0.87 21.02 24.64 -169.99 -4.19 16.83 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.16 6.43 56.52 0.36 -5.80 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 28 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.34 7.89 5.30 -39.29 -0.21 7.68 16 31 H 0.31 7.25 4.99 -39.29 -0.20 7.06 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 276.20 15.07 4.16 4.16 Total: -1.00 -29.95 276.20 -5.82 -35.77 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.66 Total: 11.41 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.43 Total: -13.86 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.72 Total: -45.53 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.16 Total: -6.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.19 Total: 16.83 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.26 Total: -2.28 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.95 -5.82 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260091792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.111 kcal (2) G-P(sol) polarization free energy of solvation -29.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds