Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 116.99888 * 2 1 4 4 C 1.38770 * 120.04702 * 269.72512 * 3 2 1 5 5 C 1.50697 * 120.01244 * 359.97438 * 4 3 2 6 6 C 1.38129 * 119.96683 * 179.74624 * 4 3 2 7 7 C 1.38264 * 120.07311 * 0.52372 * 6 4 3 8 8 C 1.38365 * 120.09643 * 359.73106 * 7 6 4 9 9 Cl 1.73597 * 119.98706 * 179.97438 * 8 7 6 10 10 C 1.38286 * 120.02689 * 0.02562 * 8 7 6 11 11 C 1.50707 * 120.02915 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46401 * 191.13968 * 11 10 8 13 13 N 1.46902 * 109.47218 * 311.13521 * 11 10 8 14 14 C 1.50693 * 109.47461 * 71.14041 * 11 10 8 15 15 H 1.08001 * 119.99876 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00440 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00051 * 180.02562 * 16 14 11 18 18 Si 1.86802 * 119.99333 * 0.02562 * 16 14 11 19 19 H 1.48504 * 109.47043 * 90.00429 * 18 16 14 20 20 H 1.48507 * 109.46974 * 209.99879 * 18 16 14 21 21 H 1.48497 * 109.47347 * 329.99824 * 18 16 14 22 22 H 1.08998 * 109.47079 * 59.99996 * 1 2 3 23 23 H 1.09001 * 109.47449 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47160 * 300.00383 * 1 2 3 25 25 H 1.09000 * 109.47161 * 90.00449 * 5 4 3 26 26 H 1.09002 * 109.46828 * 210.00410 * 5 4 3 27 27 H 1.08994 * 109.47245 * 329.99986 * 5 4 3 28 28 H 1.08003 * 119.96043 * 180.25580 * 6 4 3 29 29 H 1.08001 * 119.95313 * 179.74542 * 7 6 4 30 30 H 1.00904 * 110.99152 * 75.91276 * 13 11 10 31 31 H 1.00894 * 111.00268 * 199.86606 * 13 11 10 32 32 H 0.97010 * 119.99486 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3665 1.8274 -1.2012 5 6 2.0312 1.1541 -2.5070 6 6 2.9888 3.0605 -1.1993 7 6 3.3025 3.6764 -0.0018 8 6 2.9889 3.0619 1.1975 9 17 3.3847 3.8375 2.6994 10 6 2.3614 1.8296 1.2004 11 6 2.0193 1.1605 2.5067 12 1 1.7175 0.1300 2.3189 13 7 3.1957 1.1736 3.3864 14 6 0.8877 1.9024 3.1700 15 1 0.4593 2.7718 2.6935 16 6 0.3992 1.4713 4.3851 17 7 -0.5887 2.1186 4.9637 18 14 1.1407 -0.0320 5.2095 19 1 2.2607 0.3880 6.0896 20 1 0.1015 -0.7140 6.0222 21 1 1.6492 -0.9651 4.1723 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.0345 1.4580 -2.8271 26 1 2.7601 1.4449 -3.2634 27 1 2.0564 0.0725 -2.3751 28 1 3.2345 3.5421 -2.1343 29 1 3.7928 4.6387 -0.0026 30 1 3.3401 2.0900 3.7833 31 1 3.1141 0.4750 4.1098 32 1 -0.9321 1.8154 5.8188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260091792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = -35.365202 kcal Electronic energy + Delta-G solvation = -17403.046055 eV Core-core repulsion = 14582.077941 eV Total energy + Delta-G solvation = -2820.968114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.21819 -38.45000 -37.27256 -36.71614 -34.06462 -32.92017 -31.15387 -28.52702 -27.83643 -27.05009 -24.68745 -22.81059 -21.23999 -19.27074 -18.67667 -17.80893 -16.99185 -16.64027 -16.26424 -16.09207 -15.36574 -14.86924 -14.75578 -14.47444 -14.32565 -13.82257 -13.72991 -13.28378 -13.18690 -12.92609 -12.83585 -12.35709 -12.32848 -12.01441 -11.90181 -11.71247 -11.15481 -10.89775 -10.81799 -9.68461 -9.32491 -9.26876 -8.38215 -6.42419 0.17170 0.35727 1.20287 1.27379 1.35114 1.37237 2.19803 2.45020 2.94450 3.07778 3.77821 3.97755 4.12980 4.27296 4.38721 4.44850 4.53039 4.60836 4.68646 4.78683 4.86644 4.89712 5.01908 5.22547 5.33342 5.36804 5.45941 5.62964 5.74896 6.05238 6.38573 6.57854 6.61372 6.73401 7.20913 8.77443 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021322 B = 0.010253 C = 0.007911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.872410 B = 2730.176348 C = 3538.506533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.343 6.343 3 C 0.078 3.922 4 C -0.105 4.105 5 C -0.104 4.104 6 C -0.104 4.104 7 C -0.117 4.117 8 C -0.034 4.034 9 Cl -0.065 7.065 10 C -0.068 4.068 11 C 0.218 3.782 12 H 0.041 0.959 13 N -0.851 5.851 14 C -0.520 4.520 15 H 0.035 0.965 16 C 0.025 3.975 17 N -0.933 5.933 18 Si 0.923 3.077 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.252 1.252 22 H 0.062 0.938 23 H 0.113 0.887 24 H 0.028 0.972 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.343 0.657 31 H 0.312 0.688 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.229 -0.437 -13.385 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.260 6.260 3 C 0.034 3.966 4 C -0.106 4.106 5 C -0.160 4.160 6 C -0.122 4.122 7 C -0.136 4.136 8 C -0.061 4.061 9 Cl -0.036 7.036 10 C -0.070 4.070 11 C 0.108 3.892 12 H 0.059 0.941 13 N -0.391 5.391 14 C -0.559 4.559 15 H 0.054 0.946 16 C -0.174 4.174 17 N -0.573 5.573 18 Si 0.749 3.251 19 H -0.187 1.187 20 H -0.216 1.216 21 H -0.177 1.177 22 H 0.080 0.920 23 H 0.131 0.869 24 H 0.047 0.953 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.192 0.808 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.127 0.873 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.646 -0.718 -13.736 15.276 hybrid contribution -0.976 -0.055 2.155 2.366 sum 5.670 -0.773 -11.581 12.918 Atomic orbital electron populations 1.23111 0.77958 1.04201 1.00757 1.85878 1.20951 1.24961 1.94247 1.18451 0.99559 0.87206 0.91391 1.20585 0.99475 0.95307 0.95195 1.20722 1.02935 1.00398 0.91929 1.21181 0.98638 0.93882 0.98463 1.21345 1.00909 1.01300 0.90012 1.20744 1.03327 0.94331 0.87687 1.98269 1.92469 1.79088 1.33793 1.20293 0.96957 0.93680 0.96047 1.18119 0.87429 0.95537 0.88130 0.94119 1.59827 1.42431 1.11646 1.25147 1.21513 1.17185 1.12616 1.04616 0.94625 1.25668 0.95059 0.98968 0.97740 1.70021 1.27553 1.41754 1.17933 0.86177 0.78473 0.80956 0.79451 1.18738 1.21597 1.17686 0.91968 0.86896 0.95342 0.90180 0.88755 0.91580 0.80820 0.82683 0.83683 0.87350 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 11.13 113.37 1.26 2.36 16 2 O -0.34 -12.96 8.27 -92.40 -0.76 -13.72 16 3 C 0.08 3.00 5.67 22.50 0.13 3.13 16 4 C -0.10 -3.09 5.89 -19.76 -0.12 -3.21 16 5 C -0.10 -2.16 9.79 71.23 0.70 -1.46 16 6 C -0.10 -2.66 9.70 22.25 0.22 -2.45 16 7 C -0.12 -3.56 9.83 22.31 0.22 -3.34 16 8 C -0.03 -1.35 6.14 22.31 0.14 -1.21 16 9 Cl -0.07 -2.62 24.20 -2.72 -0.07 -2.69 16 10 C -0.07 -2.99 4.91 -19.74 -0.10 -3.08 16 11 C 0.22 10.74 2.28 43.42 0.10 10.84 16 12 H 0.04 2.11 6.13 -2.38 -0.01 2.10 16 13 N -0.85 -39.92 8.44 -174.95 -1.48 -41.40 16 14 C -0.52 -29.20 8.20 25.60 0.21 -28.99 16 15 H 0.04 2.24 7.98 -2.91 -0.02 2.22 16 16 C 0.02 1.43 5.47 84.66 0.46 1.89 16 17 N -0.93 -56.97 13.96 21.45 0.30 -56.67 16 18 Si 0.92 44.02 24.64 68.60 1.69 45.71 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.25 -11.62 6.43 99.48 0.64 -10.98 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 24 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 27 H 0.07 1.49 7.53 -2.39 -0.02 1.47 16 28 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 29 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.34 16.00 5.30 -89.69 -0.48 15.53 16 31 H 0.31 14.33 4.99 -89.70 -0.45 13.88 16 32 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -67.55 276.20 3.06 -64.49 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 0.16 Total: 29.82 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.22 Total: -25.53 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -1.18 Total: -98.07 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.76 Total: -13.72 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.69 Total: 45.71 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -0.07 Total: -2.69 kcal Total: -67.55 3.06 -64.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260091792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.124 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds