Wall clock time and date at job start Mon Mar 30 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38278 * 119.96395 * 2 1 4 4 C 1.38243 * 120.12343 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.04040 * 0.02562 * 4 3 2 6 6 Cl 1.73606 * 120.03713 * 180.02562 * 5 4 3 7 7 C 1.38814 * 119.92669 * 359.97438 * 5 4 3 8 8 O 1.35919 * 120.06327 * 179.97438 * 7 5 4 9 9 C 1.38152 * 119.96466 * 180.02562 * 2 1 3 10 10 C 1.50700 * 120.02069 * 359.95793 * 9 2 1 11 11 H 1.09006 * 109.47182 * 5.27917 * 10 9 2 12 12 C 1.50698 * 109.47461 * 125.27928 * 10 9 2 13 13 H 1.07996 * 120.00070 * 0.02562 * 12 10 9 14 14 C 1.37877 * 120.00168 * 179.97438 * 12 10 9 15 15 N 1.31519 * 120.00135 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00168 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46969 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47054 * 120.00338 * 16 14 12 19 19 H 1.48506 * 109.47126 * 240.00375 * 16 14 12 20 20 C 1.53001 * 109.47289 * 245.28370 * 10 9 2 21 21 N 1.46903 * 109.47357 * 64.99276 * 20 10 9 22 22 H 1.09000 * 109.47214 * 264.10261 * 1 2 3 23 23 H 1.08994 * 109.47395 * 24.10928 * 1 2 3 24 24 H 1.09000 * 109.47033 * 144.10765 * 1 2 3 25 25 H 1.08002 * 119.93545 * 0.02562 * 3 2 1 26 26 H 1.08001 * 119.98108 * 180.27774 * 4 3 2 27 27 H 0.96705 * 114.00178 * 90.00133 * 8 7 5 28 28 H 0.96991 * 120.00629 * 179.97438 * 15 14 12 29 29 H 1.08994 * 109.47535 * 184.99615 * 20 10 9 30 30 H 1.09003 * 109.46886 * 305.00277 * 20 10 9 31 31 H 1.00899 * 111.00313 * 179.97438 * 21 20 10 32 32 H 1.00898 * 111.00371 * 303.96475 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5800 1.2018 -0.0005 5 6 4.2755 0.0069 -0.0016 6 17 6.0115 0.0119 -0.0016 7 6 3.5840 -1.1968 -0.0016 8 8 4.2649 -2.3731 -0.0032 9 6 2.1970 -1.1969 -0.0005 10 6 1.4431 -2.5018 -0.0002 11 1 0.3752 -2.3045 -0.0940 12 6 1.9016 -3.3472 -1.1604 13 1 2.6631 -2.9768 -1.8307 14 6 1.3498 -4.5939 -1.3654 15 7 0.4228 -5.0452 -0.5488 16 14 1.9186 -5.6422 -2.8032 17 1 2.9630 -4.9119 -3.5655 18 1 2.4802 -6.9188 -2.2933 19 1 0.7651 -5.9293 -3.6934 20 6 1.7111 -3.2452 1.3100 21 7 1.1568 -2.4758 2.4319 22 1 -0.3633 -0.1056 1.0222 23 1 -0.3634 0.9380 -0.4197 24 1 -0.3633 -0.8325 -0.6025 25 1 1.6559 2.1323 0.0004 26 1 4.1171 2.1388 0.0040 27 1 4.4630 -2.7142 0.8798 28 1 0.0343 -5.9221 -0.6932 29 1 1.2386 -4.2268 1.2740 30 1 2.7859 -3.3641 1.4469 31 1 1.3207 -2.9465 3.3092 32 1 1.5316 -1.5391 2.4482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260099976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:40 Heat of formation + Delta-G solvation = -31.862189 kcal Electronic energy + Delta-G solvation = -17356.874787 eV Core-core repulsion = 14536.058575 eV Total energy + Delta-G solvation = -2820.816212 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.68505 -36.29226 -36.24173 -34.94773 -32.19164 -31.79755 -30.03252 -27.50295 -26.14835 -23.92947 -22.34901 -21.06701 -19.57143 -17.37384 -16.64310 -16.14935 -15.32548 -14.78559 -14.71076 -14.17262 -13.52519 -13.41104 -13.00975 -12.95104 -12.33423 -12.22468 -11.91959 -11.59186 -11.45707 -10.97270 -10.81172 -10.69371 -10.56788 -10.47688 -10.26164 -10.05646 -9.42014 -9.10263 -8.42137 -8.00322 -7.91455 -7.64176 -5.99940 -4.03667 1.57593 1.77486 2.52917 3.31449 3.39863 3.47190 4.01251 4.46958 4.72796 5.19891 5.27457 5.43161 5.60540 5.66493 5.78378 5.97715 6.06563 6.21934 6.42746 6.50008 6.63655 6.66742 6.75619 6.84306 7.07072 7.27557 7.60398 7.80069 7.92608 8.14605 8.27624 8.28551 8.43700 9.00307 9.59400 11.05359 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.008849 C = 0.007377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.670326 B = 3163.528830 C = 3794.656341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.126 4.126 4 C -0.121 4.121 5 C -0.075 4.075 6 Cl -0.083 7.083 7 C 0.125 3.875 8 O -0.463 6.463 9 C -0.053 4.053 10 C 0.083 3.917 11 H 0.057 0.943 12 C -0.489 4.489 13 H 0.062 0.938 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.068 3.932 21 N -0.853 5.853 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.375 0.625 28 H 0.259 0.741 29 H 0.110 0.890 30 H -0.004 1.004 31 H 0.321 0.679 32 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 9.600 4.393 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.102 4.102 6 Cl -0.054 7.054 7 C 0.079 3.921 8 O -0.271 6.271 9 C -0.054 4.054 10 C 0.065 3.935 11 H 0.074 0.926 12 C -0.528 4.528 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.062 4.062 21 N -0.380 5.380 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.231 0.769 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.014 0.986 31 H 0.131 0.869 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.498 9.362 3.429 10.566 hybrid contribution 1.674 -0.593 0.035 1.776 sum 5.171 8.769 3.464 10.753 Atomic orbital electron populations 1.20830 0.90812 1.02307 1.02929 1.19880 0.96665 0.91947 0.98794 1.20884 0.93013 0.97734 1.02778 1.20677 0.94151 0.95882 1.03305 1.21448 0.83752 0.95104 1.09899 1.98316 1.10958 1.98953 1.97191 1.18089 0.89652 0.84058 1.00265 1.84997 1.75275 1.35076 1.31795 1.20930 0.92086 0.97735 0.94665 1.17980 0.95989 0.86178 0.93373 0.92561 1.21098 1.21122 1.00430 1.10125 0.92007 1.24941 0.94981 0.97768 0.96446 1.69877 1.27206 1.18953 1.37011 0.86517 0.78527 0.80238 0.82667 1.19751 1.21176 1.21221 1.22119 0.94297 1.00517 0.89259 1.58961 1.67076 1.05683 1.06268 0.90834 0.92697 0.89950 0.85917 0.85808 0.76884 0.93057 0.87200 0.98592 0.86857 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.27 36.00 0.33 -1.48 16 2 C -0.07 -1.28 5.88 -104.64 -0.62 -1.89 16 3 C -0.13 -1.91 9.67 -39.56 -0.38 -2.29 16 4 C -0.12 -1.86 9.83 -39.57 -0.39 -2.25 16 5 C -0.08 -1.30 6.33 -39.36 -0.25 -1.55 16 6 Cl -0.08 -1.30 28.51 -51.86 -1.48 -2.78 16 7 C 0.13 2.45 6.10 -39.20 -0.24 2.21 16 8 O -0.46 -9.25 10.32 -19.48 -0.20 -9.45 16 9 C -0.05 -1.08 3.79 -104.48 -0.40 -1.47 16 10 C 0.08 1.94 1.87 -92.92 -0.17 1.77 16 11 H 0.06 1.43 5.54 -51.93 -0.29 1.14 16 12 C -0.49 -12.95 7.32 -34.44 -0.25 -13.20 16 13 H 0.06 1.73 7.14 -52.49 -0.37 1.36 16 14 C 0.06 1.59 5.29 -17.82 -0.09 1.50 16 15 N -0.89 -24.55 11.29 55.43 0.63 -23.92 16 16 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.07 1.48 5.98 -3.82 -0.02 1.46 16 21 N -0.85 -15.77 9.62 -10.37 -0.10 -15.87 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.05 0.73 8.04 -51.93 -0.42 0.31 16 24 H 0.08 1.52 6.34 -51.93 -0.33 1.19 16 25 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.38 6.23 7.67 45.56 0.35 6.58 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.11 2.80 5.95 -51.93 -0.31 2.49 16 30 H 0.00 -0.08 5.68 -51.93 -0.30 -0.38 16 31 H 0.32 5.22 9.08 -39.29 -0.36 4.87 16 32 H 0.32 5.53 8.07 -39.29 -0.32 5.21 16 LS Contribution 278.01 15.07 4.19 4.19 Total: -1.00 -28.24 278.01 -7.21 -35.45 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -2.74 Total: 13.18 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.48 Total: -17.20 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.53 Total: -39.79 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.20 Total: -9.45 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.48 Total: -2.78 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.24 -7.21 -35.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260099976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.589 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds