Wall clock time and date at job start Mon Mar 30 2020 06:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 117.00127 * 2 1 4 4 C 1.38761 * 120.04658 * 0.03079 * 3 2 1 5 5 C 1.38128 * 119.96636 * 179.97438 * 4 3 2 6 6 C 1.38275 * 120.06931 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94974 * 180.02562 * 6 5 4 8 8 C 1.38361 * 120.09801 * 359.79209 * 6 5 4 9 9 Cl 1.73593 * 119.98723 * 180.25454 * 8 6 5 10 10 C 1.38279 * 120.02619 * 0.46180 * 8 6 5 11 11 C 1.50707 * 120.03487 * 179.79228 * 10 8 6 12 12 H 1.09001 * 109.46361 * 344.51458 * 11 10 8 13 13 N 1.46899 * 109.47056 * 224.51890 * 11 10 8 14 14 C 1.50699 * 109.47283 * 104.51307 * 11 10 8 15 15 H 1.07997 * 119.99906 * 5.20827 * 14 11 10 16 16 C 1.37874 * 120.00201 * 185.20585 * 14 11 10 17 17 N 1.31519 * 119.99565 * 7.30508 * 16 14 11 18 18 Si 1.86791 * 120.00210 * 187.30283 * 16 14 11 19 19 H 1.48498 * 109.47410 * 180.02562 * 18 16 14 20 20 H 1.48496 * 109.47470 * 300.00287 * 18 16 14 21 21 H 1.48501 * 109.47125 * 60.00335 * 18 16 14 22 22 H 1.09000 * 109.47268 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46488 * 299.99554 * 1 2 3 24 24 H 1.08999 * 109.47358 * 59.98805 * 1 2 3 25 25 H 1.07995 * 120.01535 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.96341 * 180.02562 * 5 4 3 27 27 H 1.08995 * 109.47336 * 89.99852 * 7 6 5 28 28 H 1.08995 * 109.46936 * 210.00184 * 7 6 5 29 29 H 1.09003 * 109.46829 * 330.00036 * 7 6 5 30 30 H 1.00896 * 111.00447 * 65.15326 * 13 11 10 31 31 H 1.00900 * 110.99508 * 189.10244 * 13 11 10 32 32 H 0.96995 * 120.00603 * 5.48862 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9201 3.6051 0.0012 6 6 3.3010 3.6772 0.0016 7 6 3.9842 5.0204 0.0028 8 6 4.0563 2.5179 0.0058 9 17 5.7897 2.6118 0.0130 10 6 3.4309 1.2846 0.0000 11 6 4.2535 0.0218 -0.0001 12 1 5.2827 0.2587 -0.2697 13 7 3.6972 -0.9248 -0.9760 14 6 4.2238 -0.5972 1.3736 15 1 3.5987 -0.1712 2.1444 16 6 4.9947 -1.7073 1.6463 17 7 5.8618 -2.1402 0.7573 18 14 4.8075 -2.5964 3.2784 19 1 5.7431 -3.7485 3.3247 20 1 5.1185 -1.6619 4.3897 21 1 3.4122 -3.0852 3.4186 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3634 0.5140 -0.8899 25 1 0.2127 2.3199 0.0007 26 1 1.3326 4.5113 0.0021 27 1 4.1487 5.3435 1.0307 28 1 4.9423 4.9410 -0.5109 29 1 3.3558 5.7481 -0.5107 30 1 3.7827 -0.5676 -1.9157 31 1 4.1353 -1.8299 -0.8920 32 1 6.0166 -1.6343 -0.0556 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107211.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:53 Heat of formation + Delta-G solvation = -42.426534 kcal Electronic energy + Delta-G solvation = -17220.070983 eV Core-core repulsion = 14398.796667 eV Total energy + Delta-G solvation = -2821.274316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14607 -38.68351 -37.13149 -36.95886 -33.65146 -32.44267 -31.27941 -28.54691 -27.69341 -26.65998 -24.64446 -22.74812 -21.42887 -19.19790 -18.58191 -17.56686 -16.45116 -16.39931 -15.80158 -15.67528 -15.59342 -15.08352 -14.98288 -14.64527 -14.39445 -13.67049 -13.26055 -13.15569 -12.92947 -12.64180 -12.63454 -12.56219 -12.48781 -11.96425 -11.82640 -11.46057 -11.43459 -10.83183 -10.65021 -9.57181 -9.08592 -8.83128 -8.52760 -6.26783 0.25191 0.50573 1.23238 1.51692 1.58994 1.78681 2.56400 2.72960 2.75020 3.16951 3.83033 3.97624 4.06770 4.29290 4.42193 4.47429 4.48319 4.50216 4.76284 4.82587 4.84470 4.93309 4.95927 5.13950 5.32850 5.46320 5.54604 5.81423 5.89889 6.18836 6.55595 6.63068 6.82282 7.02348 7.46132 8.78487 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.009652 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.513419 B = 2900.321044 C = 3774.007598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.294 6.294 3 C 0.140 3.860 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.131 4.131 7 C -0.104 4.104 8 C -0.024 4.024 9 Cl -0.075 7.075 10 C -0.105 4.105 11 C 0.244 3.756 12 H -0.014 1.014 13 N -0.827 5.827 14 C -0.566 4.566 15 H 0.029 0.971 16 C -0.020 4.020 17 N -0.933 5.933 18 Si 1.108 2.892 19 H -0.282 1.282 20 H -0.277 1.277 21 H -0.276 1.276 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.158 0.842 26 H 0.170 0.830 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.307 0.693 31 H 0.331 0.669 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.694 12.099 -2.311 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.205 6.205 3 C 0.093 3.907 4 C -0.230 4.230 5 C -0.094 4.094 6 C -0.132 4.132 7 C -0.161 4.161 8 C -0.051 4.051 9 Cl -0.046 7.046 10 C -0.107 4.107 11 C 0.135 3.865 12 H 0.003 0.997 13 N -0.356 5.356 14 C -0.605 4.605 15 H 0.048 0.952 16 C -0.218 4.218 17 N -0.572 5.572 18 Si 0.931 3.069 19 H -0.207 1.207 20 H -0.202 1.202 21 H -0.201 1.201 22 H 0.121 0.879 23 H 0.078 0.922 24 H 0.085 0.915 25 H 0.176 0.824 26 H 0.187 0.813 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.643 10.711 -1.072 14.452 hybrid contribution 0.749 0.998 -1.325 1.820 sum -8.894 11.709 -2.397 14.898 Atomic orbital electron populations 1.23282 0.78483 1.04584 1.01648 1.86523 1.21215 1.25501 1.87289 1.18804 0.90869 0.85664 0.95341 1.21626 1.01276 0.91580 1.08517 1.21047 0.92418 0.98184 0.97790 1.19950 0.94199 0.94441 1.04618 1.20767 1.00507 0.91725 1.03069 1.20650 0.84148 0.94085 1.06243 1.98302 1.11221 1.98178 1.96884 1.19464 0.92801 0.94731 1.03727 1.17785 0.89439 0.87097 0.92141 0.99674 1.59056 1.64892 1.06068 1.05548 1.21885 1.26859 1.15866 0.95919 0.95228 1.27011 0.92268 0.96396 1.06113 1.70953 1.34660 1.40564 1.11004 0.83051 0.76663 0.75567 0.71643 1.20726 1.20232 1.20137 0.87899 0.92217 0.91502 0.82404 0.81294 0.90642 0.92058 0.88717 0.88252 0.85605 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.29 -12.08 8.66 -92.44 -0.80 -12.88 16 3 C 0.14 5.66 6.46 22.50 0.15 5.81 16 4 C -0.21 -6.40 9.04 22.37 0.20 -6.20 16 5 C -0.08 -2.05 9.69 22.25 0.22 -1.84 16 6 C -0.13 -4.12 5.88 -19.83 -0.12 -4.24 16 7 C -0.10 -2.46 9.61 71.24 0.68 -1.77 16 8 C -0.02 -0.97 6.31 22.31 0.14 -0.83 16 9 Cl -0.07 -3.00 25.42 -2.72 -0.07 -3.07 16 10 C -0.11 -4.81 4.90 -19.74 -0.10 -4.91 16 11 C 0.24 12.83 2.13 43.43 0.09 12.92 16 12 H -0.01 -0.79 5.70 -2.39 -0.01 -0.80 16 13 N -0.83 -41.11 7.68 -174.95 -1.34 -42.46 16 14 C -0.57 -32.95 8.53 25.60 0.22 -32.73 16 15 H 0.03 1.78 7.75 -2.91 -0.02 1.76 16 16 C -0.02 -1.14 5.18 84.65 0.44 -0.70 16 17 N -0.93 -56.52 12.88 21.45 0.28 -56.24 16 18 Si 1.11 52.15 29.91 68.60 2.05 54.20 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H 0.10 2.55 8.14 -2.39 -0.02 2.54 16 23 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 24 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 25 H 0.16 3.60 6.30 -2.91 -0.02 3.58 16 26 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.53 6.91 -2.39 -0.02 1.52 16 29 H 0.09 1.62 8.08 -2.39 -0.02 1.60 16 30 H 0.31 13.89 9.07 -89.70 -0.81 13.07 16 31 H 0.33 17.64 7.15 -89.69 -0.64 17.00 16 32 H 0.25 15.52 6.44 -92.71 -0.60 14.93 16 Total: -1.00 -69.46 280.46 3.03 -66.43 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: -0.12 Total: 26.98 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 3.04 Total: -32.96 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -1.07 Total: -98.69 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.80 Total: -12.88 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.07 Total: -3.07 kcal Total: -69.46 3.03 -66.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107211.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.000 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds