Wall clock time and date at job start Mon Mar 30 2020 06:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 117.00043 * 2 1 4 4 C 1.38758 * 120.05051 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.96886 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.07133 * 359.72881 * 5 4 3 7 7 C 1.50697 * 119.95057 * 180.29322 * 6 5 4 8 8 C 1.38366 * 120.09307 * 0.54763 * 6 5 4 9 9 Cl 1.73603 * 119.98314 * 179.72282 * 8 6 5 10 10 C 1.38281 * 120.03272 * 359.44858 * 8 6 5 11 11 C 1.50692 * 120.03627 * 180.25197 * 10 8 6 12 12 H 1.09004 * 109.47357 * 13.15413 * 11 10 8 13 13 N 1.46892 * 109.47212 * 133.15034 * 11 10 8 14 14 C 1.50704 * 109.47183 * 253.15407 * 11 10 8 15 15 H 1.07998 * 120.00073 * 359.97438 * 14 11 10 16 16 C 1.37883 * 119.99522 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00124 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99217 * 179.97438 * 16 14 11 19 19 H 1.48493 * 109.47552 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.46630 * 120.00082 * 18 16 14 21 21 H 1.48504 * 109.46748 * 239.99327 * 18 16 14 22 22 H 1.08998 * 109.46888 * 59.99935 * 1 2 3 23 23 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46930 * 300.00120 * 1 2 3 25 25 H 1.07997 * 120.01594 * 359.95757 * 4 3 2 26 26 H 1.08005 * 119.96391 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47112 * 270.24909 * 7 6 5 28 28 H 1.09003 * 109.47287 * 30.25610 * 7 6 5 29 29 H 1.09005 * 109.46827 * 150.25128 * 7 6 5 30 30 H 1.00903 * 111.00030 * 68.07964 * 13 11 10 31 31 H 1.00896 * 111.00578 * 192.02888 * 13 11 10 32 32 H 0.97000 * 119.99200 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9201 3.6051 0.0011 6 6 3.3009 3.6772 0.0067 7 6 3.9842 5.0204 0.0140 8 6 4.0562 2.5179 0.0004 9 17 5.7897 2.6118 0.0003 10 6 3.4310 1.2845 0.0000 11 6 4.2535 0.0219 -0.0011 12 1 5.2904 0.2635 0.2324 13 7 3.7276 -0.9060 1.0089 14 6 4.1821 -0.6230 -1.3614 15 1 3.5990 -0.1646 -2.1464 16 6 4.8603 -1.7988 -1.6032 17 7 5.5699 -2.3573 -0.6471 18 14 4.7712 -2.5985 -3.2891 19 1 3.9133 -1.7782 -4.1814 20 1 6.1368 -2.6935 -3.8647 21 1 4.1922 -3.9600 -3.1611 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.2127 2.3200 0.0003 26 1 1.3326 4.5114 0.0011 27 1 4.1489 5.3497 -1.0119 28 1 3.3557 5.7450 0.5318 29 1 4.9422 4.9379 0.5274 30 1 2.8155 -1.2481 0.7457 31 1 4.3681 -1.6693 1.1672 32 1 6.0467 -3.1847 -0.8173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:54 Heat of formation + Delta-G solvation = -45.016795 kcal Electronic energy + Delta-G solvation = -17206.716707 eV Core-core repulsion = 14385.330069 eV Total energy + Delta-G solvation = -2821.386638 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14768 -38.67493 -37.04970 -36.60646 -33.66963 -32.42454 -31.06807 -28.56917 -27.85598 -26.67327 -24.67671 -22.68687 -21.21820 -18.89132 -18.57348 -17.49927 -16.79353 -16.45010 -15.96164 -15.74408 -15.18188 -14.99834 -14.89502 -14.57386 -14.04142 -13.41438 -13.29753 -13.01496 -12.87297 -12.84858 -12.64540 -12.53845 -12.43712 -12.21507 -11.85724 -11.71586 -11.44067 -11.08264 -10.56826 -9.53162 -9.09273 -8.79578 -8.05371 -6.27348 0.33692 0.56653 1.32492 1.34161 1.36439 1.47674 2.38298 2.65859 2.81151 3.12889 3.92477 4.06460 4.13940 4.34072 4.50093 4.52320 4.55314 4.74283 4.79044 4.88732 4.95756 5.10482 5.11136 5.23860 5.43004 5.55353 5.69171 5.75042 5.93856 6.16500 6.69640 6.73145 7.02976 7.27288 7.47003 8.89472 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019018 B = 0.009520 C = 0.007385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.917655 B = 2940.355503 C = 3790.428889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.319 6.319 3 C 0.128 3.872 4 C -0.204 4.204 5 C -0.083 4.083 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.026 4.026 9 Cl -0.074 7.074 10 C -0.093 4.093 11 C 0.248 3.752 12 H 0.028 0.972 13 N -0.840 5.840 14 C -0.533 4.533 15 H 0.035 0.965 16 C 0.020 3.980 17 N -0.918 5.918 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.277 1.277 22 H 0.062 0.938 23 H 0.108 0.892 24 H 0.068 0.932 25 H 0.159 0.841 26 H 0.169 0.831 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.327 0.673 31 H 0.335 0.665 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.568 11.297 1.167 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.222 4.222 5 C -0.101 4.101 6 C -0.127 4.127 7 C -0.161 4.161 8 C -0.053 4.053 9 Cl -0.045 7.045 10 C -0.095 4.095 11 C 0.138 3.862 12 H 0.046 0.954 13 N -0.371 5.371 14 C -0.573 4.573 15 H 0.054 0.946 16 C -0.180 4.180 17 N -0.558 5.558 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.203 1.203 22 H 0.081 0.919 23 H 0.126 0.874 24 H 0.087 0.913 25 H 0.177 0.823 26 H 0.186 0.814 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.186 11.583 1.714 14.882 hybrid contribution 0.396 -1.568 -1.663 2.320 sum -8.790 10.015 0.051 13.325 Atomic orbital electron populations 1.23307 0.77476 1.04975 1.01981 1.86152 1.22389 1.26508 1.88186 1.18766 0.90825 0.85443 0.96809 1.21582 1.01232 0.91501 1.07928 1.21020 0.92438 0.98168 0.98517 1.19970 0.94223 0.94467 1.04074 1.20777 1.00542 0.91718 1.03093 1.20600 0.84227 0.93983 1.06490 1.98297 1.11150 1.98139 1.96899 1.19632 0.92736 0.95540 1.01627 1.17734 0.92286 0.86776 0.89425 0.95403 1.59498 1.07340 1.22751 1.47468 1.21855 1.29469 1.07738 0.98235 0.94625 1.25655 0.94468 0.97591 1.00239 1.69888 1.32379 1.19844 1.33682 0.85580 0.77686 0.78276 0.80475 1.19930 1.20657 1.20266 0.91936 0.87373 0.91309 0.82316 0.81367 0.90525 0.88809 0.92022 0.85939 0.85167 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.32 -12.51 7.35 -92.43 -0.68 -13.19 16 3 C 0.13 5.11 6.44 22.50 0.14 5.26 16 4 C -0.20 -6.14 9.04 22.37 0.20 -5.94 16 5 C -0.08 -2.26 9.69 22.25 0.22 -2.04 16 6 C -0.13 -4.02 5.88 -19.83 -0.12 -4.14 16 7 C -0.10 -2.50 9.61 71.23 0.68 -1.82 16 8 C -0.03 -1.06 6.31 22.31 0.14 -0.92 16 9 Cl -0.07 -2.99 25.39 -2.72 -0.07 -3.06 16 10 C -0.09 -4.32 4.90 -19.75 -0.10 -4.42 16 11 C 0.25 13.30 2.64 43.42 0.11 13.41 16 12 H 0.03 1.64 6.32 -2.38 -0.02 1.63 16 13 N -0.84 -43.88 8.92 -174.97 -1.56 -45.44 16 14 C -0.53 -30.48 8.36 25.60 0.21 -30.27 16 15 H 0.04 2.10 7.74 -2.91 -0.02 2.07 16 16 C 0.02 1.11 5.39 84.66 0.46 1.57 16 17 N -0.92 -53.12 11.67 21.45 0.25 -52.87 16 18 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 19 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 23 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.07 1.44 7.66 -2.39 -0.02 1.42 16 25 H 0.16 3.53 6.30 -2.91 -0.02 3.51 16 26 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.64 8.09 -2.39 -0.02 1.62 16 29 H 0.06 1.57 6.90 -2.38 -0.02 1.55 16 30 H 0.33 16.66 6.30 -89.69 -0.57 16.10 16 31 H 0.34 18.59 7.34 -89.70 -0.66 17.93 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -66.71 279.22 2.98 -63.74 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.06 Total: 31.53 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 3.07 Total: -27.75 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -1.31 Total: -98.31 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.68 Total: -13.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 17 Polarization: -2.99 SS G_CDS: -0.07 Total: -3.06 kcal Total: -66.71 2.98 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.722 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds