Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99768 * 2 1 4 4 C 1.38768 * 120.04867 * 0.22579 * 3 2 1 5 5 C 1.38137 * 119.96646 * 180.27729 * 4 3 2 6 6 C 1.50690 * 119.96240 * 179.76568 * 5 4 3 7 7 C 1.38270 * 120.06765 * 359.74548 * 5 4 3 8 8 C 1.38366 * 120.10103 * 0.02562 * 7 5 4 9 9 Cl 1.73594 * 119.98700 * 179.97438 * 8 7 5 10 10 C 1.38290 * 120.02718 * 359.97438 * 8 7 5 11 11 C 1.50694 * 120.02999 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47866 * 346.31836 * 11 10 8 13 13 N 1.46901 * 109.47198 * 226.31331 * 11 10 8 14 14 C 1.50701 * 109.46897 * 106.31823 * 11 10 8 15 15 H 1.07994 * 120.00393 * 359.97438 * 14 11 10 16 16 C 1.37885 * 120.00048 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99615 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00276 * 179.72419 * 16 14 11 19 19 H 1.48495 * 109.47191 * 180.27561 * 18 16 14 20 20 H 1.48500 * 109.47204 * 300.28146 * 18 16 14 21 21 H 1.48504 * 109.46903 * 60.27734 * 18 16 14 22 22 H 1.08998 * 109.46788 * 60.00546 * 1 2 3 23 23 H 1.09003 * 109.46702 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47213 * 300.00081 * 1 2 3 25 25 H 1.07992 * 120.01609 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.47747 * 269.97870 * 6 5 4 27 27 H 1.09000 * 109.47182 * 29.98518 * 6 5 4 28 28 H 1.09005 * 109.47072 * 149.97584 * 6 5 4 29 29 H 1.08000 * 119.94718 * 179.97438 * 7 5 4 30 30 H 1.00900 * 111.00283 * 291.64723 * 13 11 10 31 31 H 1.00904 * 110.99534 * 55.59646 * 13 11 10 32 32 H 0.96998 * 120.00028 * 359.72286 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2911 2.3753 0.0047 5 6 1.9199 3.6052 -0.0011 6 6 1.1001 4.8696 -0.0013 7 6 3.3007 3.6773 -0.0063 8 6 4.0562 2.5181 -0.0062 9 17 5.7895 2.6120 -0.0134 10 6 3.4309 1.2846 -0.0004 11 6 4.2535 0.0220 -0.0009 12 1 5.2874 0.2620 -0.2492 13 7 3.7149 -0.9129 -0.9978 14 6 4.1993 -0.6134 1.3645 15 1 3.6267 -0.1492 2.1538 16 6 4.8806 -1.7875 1.6061 17 7 5.5783 -2.3526 0.6450 18 14 4.8197 -2.5711 3.3007 19 1 5.6342 -3.8127 3.3015 20 1 5.3633 -1.6217 4.3049 21 1 3.4129 -2.9017 3.6428 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2126 2.3200 0.0080 26 1 0.8987 5.1720 -1.0289 27 1 0.1576 4.6916 0.5165 28 1 1.6511 5.6600 0.5087 29 1 3.7903 4.6400 -0.0112 30 1 2.8083 -1.2566 -0.7185 31 1 3.6737 -0.4843 -1.9103 32 1 5.6102 -1.9455 -0.2348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260110491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = -25.221794 kcal Electronic energy + Delta-G solvation = -17190.072859 eV Core-core repulsion = 14369.544596 eV Total energy + Delta-G solvation = -2820.528263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.00220 -37.39994 -35.89428 -35.01696 -32.05356 -30.51382 -29.61579 -27.51497 -26.80506 -24.79616 -22.07781 -21.79665 -20.38047 -17.32911 -16.88474 -16.00825 -15.40187 -15.22831 -14.55317 -14.09713 -13.82191 -13.67221 -13.58650 -13.22573 -12.56335 -12.43836 -12.08626 -11.83367 -11.46406 -11.39194 -11.11287 -10.91103 -10.65634 -10.63935 -10.25349 -9.99969 -9.84942 -8.69157 -8.20502 -8.09245 -7.67091 -7.26052 -6.04913 -3.85060 1.55190 1.73916 2.61824 3.53626 3.55801 3.72268 3.74278 3.98740 4.70382 4.89792 5.20090 5.22555 5.29310 5.34596 5.43286 5.58358 5.62169 5.67062 5.72945 5.79420 5.89903 6.30213 6.33847 6.53404 6.70942 6.71907 6.93443 7.42668 7.81242 8.12189 8.46409 8.81952 9.01495 9.20474 9.95658 11.35414 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.009004 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.211343 B = 3109.150356 C = 3863.466118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.289 6.289 3 C 0.144 3.856 4 C -0.212 4.212 5 C -0.065 4.065 6 C -0.106 4.106 7 C -0.152 4.152 8 C -0.001 4.001 9 Cl -0.062 7.062 10 C -0.098 4.098 11 C 0.241 3.759 12 H 0.052 0.948 13 N -0.827 5.827 14 C -0.594 4.594 15 H 0.041 0.959 16 C 0.038 3.962 17 N -0.895 5.895 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.291 1.291 22 H 0.047 0.953 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.338 0.662 31 H 0.295 0.705 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 11.296 -2.542 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.201 6.201 3 C 0.097 3.903 4 C -0.231 4.231 5 C -0.066 4.066 6 C -0.163 4.163 7 C -0.171 4.171 8 C -0.028 4.028 9 Cl -0.033 7.033 10 C -0.101 4.101 11 C 0.132 3.868 12 H 0.070 0.930 13 N -0.356 5.356 14 C -0.633 4.633 15 H 0.060 0.940 16 C -0.172 4.172 17 N -0.529 5.529 18 Si 0.891 3.109 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.218 1.218 22 H 0.066 0.934 23 H 0.116 0.884 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.155 0.845 31 H 0.104 0.896 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.223 9.324 -1.501 12.523 hybrid contribution -1.585 2.291 -0.868 2.918 sum -9.809 11.615 -2.369 15.386 Atomic orbital electron populations 1.23020 0.79810 1.03656 1.00463 1.86231 1.19895 1.25888 1.88101 1.18644 0.91273 0.84146 0.96203 1.21075 0.99558 0.91931 1.10497 1.19356 0.92984 0.94514 0.99716 1.20702 0.99049 0.94507 1.02001 1.20687 0.92954 0.96981 1.06524 1.20479 0.84757 0.93751 1.03863 1.98337 1.09931 1.98272 1.96766 1.20880 0.91921 0.98036 0.99309 1.18413 0.92500 0.82616 0.93272 0.93014 1.59604 1.32350 1.40593 1.03097 1.21555 1.36110 1.11513 0.94163 0.94029 1.25531 0.93085 0.94346 1.04212 1.70529 1.36689 1.40749 1.04967 0.83685 0.75980 0.76213 0.75008 1.20951 1.21787 1.21814 0.93412 0.88388 0.93134 0.85791 0.91397 0.91797 0.91569 0.85762 0.84507 0.89552 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.29 -5.55 7.35 -19.42 -0.14 -5.69 16 3 C 0.14 2.82 6.45 -39.22 -0.25 2.57 16 4 C -0.21 -3.42 8.69 -39.42 -0.34 -3.76 16 5 C -0.07 -0.98 5.88 -104.65 -0.62 -1.60 16 6 C -0.11 -1.14 10.01 36.00 0.36 -0.78 16 7 C -0.15 -2.54 9.48 -39.52 -0.37 -2.91 16 8 C 0.00 -0.02 6.31 -39.52 -0.25 -0.27 16 9 Cl -0.06 -1.21 27.06 -51.86 -1.40 -2.61 16 10 C -0.10 -2.16 4.82 -104.44 -0.50 -2.66 16 11 C 0.24 6.15 2.20 -70.02 -0.15 6.00 16 12 H 0.05 1.42 6.21 -51.93 -0.32 1.10 16 13 N -0.83 -20.11 7.61 -6.65 -0.05 -20.16 16 14 C -0.59 -17.01 8.40 -34.44 -0.29 -17.30 16 15 H 0.04 1.23 7.74 -52.49 -0.41 0.82 16 16 C 0.04 1.10 5.39 -17.81 -0.10 1.00 16 17 N -0.89 -27.65 13.51 55.43 0.75 -26.90 16 18 Si 1.06 26.10 29.90 -169.99 -5.08 21.02 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 23 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 25 H 0.12 1.64 6.30 -52.49 -0.33 1.31 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.34 8.19 6.28 -39.29 -0.25 7.95 16 31 H 0.29 6.46 8.98 -39.29 -0.35 6.10 16 32 H 0.29 9.04 6.39 -40.82 -0.26 8.78 16 LS Contribution 281.93 15.07 4.25 4.25 Total: -1.00 -32.12 281.93 -6.83 -38.95 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -3.62 Total: 9.52 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.53 Total: -18.37 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.70 Total: -47.07 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.14 Total: -5.69 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.08 Total: 21.02 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.40 Total: -2.61 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.12 -6.83 -38.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.729 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds