Wall clock time and date at job start Mon Mar 30 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99768 * 2 1 4 4 C 1.38768 * 120.04867 * 0.22579 * 3 2 1 5 5 C 1.38137 * 119.96646 * 180.27729 * 4 3 2 6 6 C 1.50690 * 119.96240 * 179.76568 * 5 4 3 7 7 C 1.38270 * 120.06765 * 359.74548 * 5 4 3 8 8 C 1.38366 * 120.10103 * 0.02562 * 7 5 4 9 9 Cl 1.73594 * 119.98700 * 179.97438 * 8 7 5 10 10 C 1.38290 * 120.02718 * 359.97438 * 8 7 5 11 11 C 1.50694 * 120.02999 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47866 * 346.31836 * 11 10 8 13 13 N 1.46901 * 109.47198 * 226.31331 * 11 10 8 14 14 C 1.50701 * 109.46897 * 106.31823 * 11 10 8 15 15 H 1.07994 * 120.00393 * 359.97438 * 14 11 10 16 16 C 1.37885 * 120.00048 * 179.97438 * 14 11 10 17 17 N 1.31519 * 119.99615 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00276 * 179.72419 * 16 14 11 19 19 H 1.48495 * 109.47191 * 180.27561 * 18 16 14 20 20 H 1.48500 * 109.47204 * 300.28146 * 18 16 14 21 21 H 1.48504 * 109.46903 * 60.27734 * 18 16 14 22 22 H 1.08998 * 109.46788 * 60.00546 * 1 2 3 23 23 H 1.09003 * 109.46702 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47213 * 300.00081 * 1 2 3 25 25 H 1.07992 * 120.01609 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.47747 * 269.97870 * 6 5 4 27 27 H 1.09000 * 109.47182 * 29.98518 * 6 5 4 28 28 H 1.09005 * 109.47072 * 149.97584 * 6 5 4 29 29 H 1.08000 * 119.94718 * 179.97438 * 7 5 4 30 30 H 1.00900 * 111.00283 * 291.64723 * 13 11 10 31 31 H 1.00904 * 110.99534 * 55.59646 * 13 11 10 32 32 H 0.96998 * 120.00028 * 359.72286 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2911 2.3753 0.0047 5 6 1.9199 3.6052 -0.0011 6 6 1.1001 4.8696 -0.0013 7 6 3.3007 3.6773 -0.0063 8 6 4.0562 2.5181 -0.0062 9 17 5.7895 2.6120 -0.0134 10 6 3.4309 1.2846 -0.0004 11 6 4.2535 0.0220 -0.0009 12 1 5.2874 0.2620 -0.2492 13 7 3.7149 -0.9129 -0.9978 14 6 4.1993 -0.6134 1.3645 15 1 3.6267 -0.1492 2.1538 16 6 4.8806 -1.7875 1.6061 17 7 5.5783 -2.3526 0.6450 18 14 4.8197 -2.5711 3.3007 19 1 5.6342 -3.8127 3.3015 20 1 5.3633 -1.6217 4.3049 21 1 3.4129 -2.9017 3.6428 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.2126 2.3200 0.0080 26 1 0.8987 5.1720 -1.0289 27 1 0.1576 4.6916 0.5165 28 1 1.6511 5.6600 0.5087 29 1 3.7903 4.6400 -0.0112 30 1 2.8083 -1.2566 -0.7185 31 1 3.6737 -0.4843 -1.9103 32 1 5.6102 -1.9455 -0.2348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110491.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:56 Heat of formation + Delta-G solvation = -46.823707 kcal Electronic energy + Delta-G solvation = -17191.009588 eV Core-core repulsion = 14369.544596 eV Total energy + Delta-G solvation = -2821.464992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37203 -38.73870 -37.33837 -36.84364 -33.81236 -32.21885 -30.94508 -28.69794 -28.25049 -26.64754 -23.72134 -23.18617 -21.93704 -19.04799 -18.47023 -17.51107 -16.76651 -16.60945 -16.02432 -15.86570 -15.54506 -15.11610 -15.02215 -14.62944 -13.96316 -13.65064 -13.46352 -13.20834 -12.92510 -12.67972 -12.62153 -12.55204 -12.48613 -12.11550 -11.92353 -11.54228 -11.49349 -10.69732 -10.41018 -9.57267 -9.30716 -8.94729 -8.31946 -6.14434 0.17193 0.38663 1.16638 1.53373 1.61901 1.80814 2.47247 2.58545 2.69587 3.38780 3.75721 3.98680 4.12700 4.18610 4.32564 4.36258 4.38551 4.47090 4.68966 4.73575 4.82245 4.84974 5.00583 5.17085 5.23210 5.46793 5.54166 5.72528 6.00677 6.27944 6.51689 6.77190 6.88879 7.18320 7.73522 9.04325 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019641 B = 0.009004 C = 0.007246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.211343 B = 3109.150356 C = 3863.466118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.133 3.867 4 C -0.207 4.207 5 C -0.050 4.050 6 C -0.104 4.104 7 C -0.156 4.156 8 C -0.015 4.015 9 Cl -0.073 7.073 10 C -0.144 4.144 11 C 0.247 3.753 12 H 0.023 0.977 13 N -0.833 5.833 14 C -0.596 4.596 15 H 0.025 0.975 16 C -0.013 4.013 17 N -0.923 5.923 18 Si 1.105 2.895 19 H -0.284 1.284 20 H -0.278 1.278 21 H -0.276 1.276 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.063 0.937 25 H 0.159 0.841 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.339 0.661 31 H 0.306 0.694 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 13.217 -2.060 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.087 3.913 4 C -0.226 4.226 5 C -0.051 4.051 6 C -0.161 4.161 7 C -0.175 4.175 8 C -0.043 4.043 9 Cl -0.044 7.044 10 C -0.148 4.148 11 C 0.138 3.862 12 H 0.041 0.959 13 N -0.364 5.364 14 C -0.635 4.635 15 H 0.044 0.956 16 C -0.216 4.216 17 N -0.559 5.559 18 Si 0.929 3.071 19 H -0.210 1.210 20 H -0.204 1.204 21 H -0.201 1.201 22 H 0.090 0.910 23 H 0.129 0.871 24 H 0.082 0.918 25 H 0.176 0.824 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.155 0.845 31 H 0.117 0.883 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.728 11.268 -1.024 15.592 hybrid contribution -0.937 1.811 -1.066 2.301 sum -11.664 13.079 -2.091 17.649 Atomic orbital electron populations 1.23349 0.76978 1.05241 1.02180 1.86152 1.22925 1.26362 1.88169 1.18786 0.90741 0.85502 0.96300 1.21450 1.01110 0.90956 1.09050 1.19962 0.92714 0.96154 0.96246 1.20826 0.99167 0.92284 1.03773 1.21027 0.93769 0.96756 1.05915 1.20735 0.84505 0.94411 1.04603 1.98323 1.10994 1.98259 1.96873 1.20570 0.93156 0.97101 1.03963 1.17992 0.91939 0.84455 0.91827 0.95898 1.59403 1.32343 1.41020 1.03597 1.21795 1.34903 1.11334 0.95428 0.95631 1.26866 0.92558 0.95266 1.06876 1.70651 1.38754 1.41544 1.04961 0.83104 0.76822 0.75613 0.71542 1.20984 1.20432 1.20126 0.91028 0.87121 0.91842 0.82365 0.89368 0.89925 0.90145 0.83293 0.84483 0.88327 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.32 -12.18 7.35 -92.40 -0.68 -12.86 16 3 C 0.13 5.10 6.45 22.50 0.15 5.25 16 4 C -0.21 -6.03 8.69 22.37 0.19 -5.84 16 5 C -0.05 -1.33 5.88 -19.88 -0.12 -1.45 16 6 C -0.10 -1.69 10.01 71.23 0.71 -0.97 16 7 C -0.16 -4.84 9.48 22.31 0.21 -4.63 16 8 C -0.02 -0.60 6.31 22.31 0.14 -0.46 16 9 Cl -0.07 -2.93 27.06 -2.72 -0.07 -3.00 16 10 C -0.14 -6.44 4.82 -19.75 -0.10 -6.53 16 11 C 0.25 13.06 2.20 43.42 0.10 13.16 16 12 H 0.02 1.34 6.21 -2.39 -0.01 1.32 16 13 N -0.83 -41.91 7.61 -174.96 -1.33 -43.25 16 14 C -0.60 -35.02 8.40 25.60 0.22 -34.80 16 15 H 0.03 1.54 7.74 -2.91 -0.02 1.52 16 16 C -0.01 -0.76 5.39 84.66 0.46 -0.31 16 17 N -0.92 -58.73 13.51 21.45 0.29 -58.44 16 18 Si 1.11 53.15 29.90 68.60 2.05 55.20 16 19 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H 0.07 1.37 7.67 -2.39 -0.02 1.36 16 23 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.06 1.36 7.65 -2.39 -0.02 1.34 16 25 H 0.16 3.43 6.30 -2.91 -0.02 3.41 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 28 H 0.08 1.13 8.09 -2.38 -0.02 1.12 16 29 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.34 16.85 6.28 -89.69 -0.56 16.29 16 31 H 0.31 13.91 8.98 -89.69 -0.81 13.10 16 32 H 0.28 17.98 6.39 -92.71 -0.59 17.39 16 Total: -1.00 -72.13 281.93 3.30 -68.84 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.03 Total: 28.58 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.07 Total: -35.07 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -1.04 Total: -101.68 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.68 Total: -12.86 kcal Atomic # 14 Polarization: 53.15 SS G_CDS: 2.05 Total: 55.20 kcal Atomic # 17 Polarization: -2.93 SS G_CDS: -0.07 Total: -3.00 kcal Total: -72.13 3.30 -68.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110491.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.014 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds