Wall clock time and date at job start Mon Mar 30 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35899 * 117.00222 * 2 1 4 4 C 1.38761 * 120.04662 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.96997 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.96715 * 179.97438 * 5 4 3 7 7 C 1.38266 * 120.06868 * 359.97438 * 5 4 3 8 8 C 1.38363 * 120.09778 * 359.78526 * 7 5 4 9 9 Cl 1.73600 * 119.98584 * 180.25784 * 8 7 5 10 10 C 1.38275 * 120.02855 * 0.46703 * 8 7 5 11 11 C 1.50702 * 120.03644 * 179.79165 * 10 8 7 12 12 H 1.09000 * 109.46846 * 13.31320 * 11 10 8 13 13 N 1.46896 * 109.47446 * 133.30981 * 11 10 8 14 14 C 1.50695 * 109.47175 * 253.31204 * 11 10 8 15 15 H 1.08006 * 120.00233 * 359.97438 * 14 11 10 16 16 C 1.37878 * 120.00258 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99656 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00088 * 180.02562 * 16 14 11 19 19 H 1.48495 * 109.47183 * 59.99943 * 18 16 14 20 20 H 1.48508 * 109.46860 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46788 * 299.99504 * 18 16 14 22 22 H 1.08998 * 109.47527 * 300.00129 * 1 2 3 23 23 H 1.09002 * 109.47161 * 60.00100 * 1 2 3 24 24 H 1.08999 * 109.47367 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.01552 * 0.02562 * 4 3 2 26 26 H 1.08998 * 109.47247 * 90.00360 * 6 5 4 27 27 H 1.09002 * 109.47549 * 210.00502 * 6 5 4 28 28 H 1.08999 * 109.47673 * 330.00302 * 6 5 4 29 29 H 1.08003 * 119.95437 * 180.02562 * 7 5 4 30 30 H 1.00898 * 110.99943 * 68.77196 * 13 11 10 31 31 H 1.00897 * 111.00323 * 192.72741 * 13 11 10 32 32 H 0.97005 * 119.99718 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2912 2.3752 0.0005 5 6 1.9200 3.6051 0.0011 6 6 1.1002 4.8696 0.0011 7 6 3.3008 3.6772 0.0016 8 6 4.0561 2.5180 0.0061 9 17 5.7895 2.6119 0.0135 10 6 3.4309 1.2846 0.0003 11 6 4.2535 0.0219 0.0004 12 1 5.2887 0.2628 0.2420 13 7 3.7206 -0.9096 1.0036 14 6 4.1914 -0.6181 -1.3624 15 1 3.6138 -0.1569 -2.1499 16 6 4.8721 -1.7926 -1.6042 17 7 5.5760 -2.3539 -0.6454 18 14 4.7958 -2.5856 -3.2938 19 1 5.3344 -1.6435 -4.3075 20 1 5.6073 -3.8293 -3.2939 21 1 3.3856 -2.9140 -3.6231 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2126 2.3199 0.0014 26 1 0.9023 5.1743 1.0287 27 1 1.6495 5.6588 -0.5124 28 1 0.1560 4.6906 -0.5131 29 1 3.7905 4.6398 0.0024 30 1 2.8154 -1.2594 0.7274 31 1 4.3651 -1.6674 1.1718 32 1 6.0552 -3.1800 -0.8156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260110493.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:58 Heat of formation + Delta-G solvation = -46.245116 kcal Electronic energy + Delta-G solvation = -17140.927423 eV Core-core repulsion = 14319.487521 eV Total energy + Delta-G solvation = -2821.439902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.17721 -38.58813 -37.20657 -36.61890 -33.84968 -32.15167 -30.81660 -28.62448 -28.23015 -27.00749 -23.63316 -23.08384 -21.67289 -18.63804 -18.40458 -17.41099 -16.93523 -16.47187 -16.19152 -15.77219 -15.23270 -15.03516 -14.78199 -14.44612 -13.93344 -13.52192 -13.29438 -13.08386 -12.98910 -12.82388 -12.63473 -12.47680 -12.38710 -12.19751 -11.99078 -11.79961 -11.36191 -11.10245 -10.57001 -9.45082 -9.10898 -8.89578 -8.04820 -6.27073 0.31672 0.55176 1.28986 1.36375 1.37452 1.45418 2.38619 2.63135 2.79002 3.13337 3.87923 4.12653 4.21516 4.29719 4.43509 4.48917 4.49480 4.77167 4.80838 4.87853 4.92750 5.03215 5.17730 5.25157 5.36989 5.59208 5.68760 5.73977 5.92979 6.16831 6.67959 6.73047 7.03182 7.27533 7.47222 8.89698 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.019718 B = 0.008949 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.696923 B = 3128.260015 C = 3888.654852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.318 6.318 3 C 0.141 3.859 4 C -0.210 4.210 5 C -0.054 4.054 6 C -0.103 4.103 7 C -0.157 4.157 8 C -0.018 4.018 9 Cl -0.076 7.076 10 C -0.102 4.102 11 C 0.249 3.751 12 H 0.028 0.972 13 N -0.840 5.840 14 C -0.536 4.536 15 H 0.036 0.964 16 C 0.021 3.979 17 N -0.918 5.918 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.273 1.273 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.109 0.891 25 H 0.157 0.843 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.327 0.673 31 H 0.335 0.665 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.838 11.107 1.169 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.230 6.230 3 C 0.094 3.906 4 C -0.229 4.229 5 C -0.055 4.055 6 C -0.159 4.159 7 C -0.176 4.176 8 C -0.045 4.045 9 Cl -0.047 7.047 10 C -0.104 4.104 11 C 0.138 3.862 12 H 0.046 0.954 13 N -0.370 5.370 14 C -0.576 4.576 15 H 0.054 0.946 16 C -0.179 4.179 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.203 1.203 20 H -0.206 1.206 21 H -0.198 1.198 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.175 0.825 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.166 0.834 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.472 11.388 1.717 15.566 hybrid contribution 0.533 -1.492 -1.653 2.289 sum -9.939 9.897 0.064 14.026 Atomic orbital electron populations 1.23315 0.77438 1.05021 1.01995 1.86161 1.22432 1.26423 1.88021 1.18736 0.90804 0.85334 0.95708 1.21424 1.01019 0.91011 1.09437 1.19915 0.92717 0.96080 0.96752 1.20803 0.99130 0.92354 1.03629 1.20963 0.93718 0.96620 1.06304 1.20673 0.84343 0.94330 1.05137 1.98312 1.11175 1.98267 1.96937 1.19611 0.92689 0.95579 1.02548 1.17719 0.92234 0.86750 0.89450 0.95384 1.59496 1.07487 1.22681 1.47324 1.21814 1.29823 1.07899 0.98049 0.94583 1.25648 0.94428 0.97526 1.00249 1.69879 1.32370 1.19862 1.33715 0.85704 0.78125 0.77730 0.80598 1.20262 1.20588 1.19781 0.91305 0.91931 0.87293 0.82519 0.89581 0.90202 0.90007 0.83360 0.85948 0.85223 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.32 -12.45 7.36 -92.41 -0.68 -13.13 16 3 C 0.14 5.64 6.45 22.50 0.15 5.79 16 4 C -0.21 -6.45 8.69 22.37 0.19 -6.25 16 5 C -0.05 -1.51 5.88 -19.88 -0.12 -1.62 16 6 C -0.10 -1.78 10.01 71.23 0.71 -1.07 16 7 C -0.16 -5.08 9.48 22.31 0.21 -4.87 16 8 C -0.02 -0.73 6.31 22.31 0.14 -0.59 16 9 Cl -0.08 -3.10 27.06 -2.72 -0.07 -3.17 16 10 C -0.10 -4.74 4.90 -19.75 -0.10 -4.84 16 11 C 0.25 13.34 2.63 43.42 0.11 13.45 16 12 H 0.03 1.65 6.33 -2.39 -0.02 1.64 16 13 N -0.84 -43.79 8.89 -174.97 -1.56 -45.35 16 14 C -0.54 -30.64 8.37 25.60 0.21 -30.43 16 15 H 0.04 2.11 7.74 -2.91 -0.02 2.09 16 16 C 0.02 1.18 5.39 84.65 0.46 1.63 16 17 N -0.92 -53.23 11.69 21.45 0.25 -52.98 16 18 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 22 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 23 H 0.06 1.38 7.66 -2.39 -0.02 1.36 16 24 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.16 3.61 6.30 -2.91 -0.02 3.59 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 28 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 29 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 30 H 0.33 16.66 6.31 -89.70 -0.57 16.09 16 31 H 0.34 18.53 7.37 -89.70 -0.66 17.87 16 32 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 Total: -1.00 -66.33 281.97 2.99 -63.34 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.07 Total: 31.59 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 3.09 Total: -27.26 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -1.31 Total: -98.33 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.68 Total: -13.13 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.07 Total: -3.17 kcal Total: -66.33 2.99 -63.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260110493.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.100 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds