Wall clock time and date at job start Mon Mar 30 2020 06:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.64805 * 61.69753 * 9 7 2 11 11 C 1.54600 * 110.72835 * 298.54616 * 9 7 2 12 12 C 1.53992 * 105.14075 * 219.68977 * 11 9 7 13 13 N 1.47903 * 107.05732 * 358.76825 * 12 11 9 14 14 C 1.46896 * 110.99514 * 145.84705 * 13 12 11 15 15 C 1.50702 * 109.47489 * 69.87681 * 14 13 12 16 16 O 1.34367 * 125.79774 * 269.69678 * 15 14 13 17 17 C 1.34295 * 109.48083 * 179.85839 * 16 15 14 18 18 C 1.34515 * 108.44440 * 0.39992 * 17 16 15 19 19 C 1.34588 * 125.79895 * 89.99264 * 15 14 13 20 20 Cl 1.73594 * 126.58590 * 359.97438 * 19 15 14 21 21 C 1.48526 * 105.82017 * 25.33574 * 13 12 11 22 22 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 23 23 H 1.09001 * 110.30609 * 338.60458 * 11 9 7 24 24 H 1.08995 * 110.30885 * 100.66836 * 11 9 7 25 25 H 1.08991 * 109.92143 * 118.12735 * 12 11 9 26 26 H 1.09006 * 109.91228 * 239.22621 * 12 11 9 27 27 H 1.09007 * 109.47285 * 189.87497 * 14 13 12 28 28 H 1.08995 * 109.47683 * 309.87619 * 14 13 12 29 29 H 1.07999 * 125.77987 * 180.15045 * 17 16 15 30 30 H 1.08000 * 126.57675 * 179.73015 * 18 17 16 31 31 H 1.08998 * 110.67041 * 202.35493 * 21 13 12 32 32 H 1.09007 * 110.67135 * 79.22418 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6398 -2.5908 -0.8961 11 6 0.3796 -2.6266 1.2723 12 6 0.5077 -4.0999 1.7017 13 7 1.3771 -4.7672 0.7085 14 6 2.1993 -5.8064 1.3427 15 6 1.3206 -6.9579 1.7587 16 8 0.7115 -7.0916 2.9489 17 6 0.0097 -8.2365 2.9668 18 6 0.1722 -8.8537 1.7827 19 6 1.0173 -8.0297 1.0034 20 17 1.5590 -8.3408 -0.6163 21 6 2.2271 -3.6956 0.1295 22 1 -0.4850 -0.8401 -0.0004 23 1 0.7560 -1.9699 2.0566 24 1 -0.6588 -2.3862 1.0445 25 1 0.9602 -4.1603 2.6914 26 1 -0.4757 -4.5699 1.7138 27 1 2.9491 -6.1590 0.6344 28 1 2.6951 -5.3921 2.2205 29 1 -0.5814 -8.6020 3.7934 30 1 -0.2594 -9.7977 1.4844 31 1 2.6044 -3.9906 -0.8496 32 1 3.0494 -3.4512 0.8021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260136308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:35 Heat of formation + Delta-G solvation = 7.903656 kcal Electronic energy + Delta-G solvation = -16667.118408 eV Core-core repulsion = 13848.026572 eV Total energy + Delta-G solvation = -2819.091835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.70413 -38.24426 -36.55519 -33.88985 -32.80966 -31.48844 -28.86034 -28.28673 -25.20455 -23.79060 -21.93286 -20.94846 -20.25052 -19.60254 -17.55967 -16.83220 -16.28240 -15.46767 -14.79324 -14.46136 -13.92776 -13.67463 -13.62808 -13.09353 -12.83559 -12.72960 -12.24013 -11.90452 -11.69338 -11.35557 -10.95967 -10.77043 -10.61444 -10.54751 -10.11728 -9.83041 -9.65908 -9.47369 -8.59230 -8.42711 -8.34919 -7.96038 -6.33536 -4.06617 1.54679 2.12599 2.35415 2.98528 3.43543 3.46371 3.62071 4.44752 4.54587 4.64535 4.79331 5.10026 5.38125 5.44334 5.47200 5.59841 5.65163 5.87564 5.89387 6.04496 6.14761 6.22578 6.35301 6.63089 6.87503 6.89098 6.95433 7.23522 7.36609 7.46263 7.67745 8.24058 8.43108 8.88596 9.66093 11.04919 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.039733 B = 0.004881 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.530174 B = 5735.571464 C = 6092.326689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 1.070 2.930 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.597 4.597 8 H 0.050 0.950 9 C 0.038 3.962 10 H 0.029 0.971 11 C -0.120 4.120 12 C 0.039 3.961 13 N -0.514 5.514 14 C 0.121 3.879 15 C 0.029 3.971 16 O -0.163 6.163 17 C -0.034 4.034 18 C -0.203 4.203 19 C -0.119 4.119 20 Cl -0.034 7.034 21 C 0.050 3.950 22 H 0.274 0.726 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.208 0.792 30 H 0.155 0.845 31 H 0.069 0.931 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 -16.376 4.878 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.184 4.184 3 Si 0.898 3.102 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.635 4.635 8 H 0.068 0.932 9 C 0.019 3.981 10 H 0.047 0.953 11 C -0.159 4.159 12 C -0.089 4.089 13 N -0.239 5.239 14 C -0.007 4.007 15 C -0.023 4.023 16 O -0.059 6.059 17 C -0.102 4.102 18 C -0.223 4.223 19 C -0.148 4.148 20 Cl -0.005 7.005 21 C -0.076 4.076 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.072 0.928 29 H 0.224 0.776 30 H 0.173 0.827 31 H 0.087 0.913 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.375 -14.804 4.577 15.556 hybrid contribution 0.531 -1.702 0.446 1.838 sum 1.906 -16.506 5.024 17.359 Atomic orbital electron populations 1.70755 1.06862 1.31211 1.46014 1.25768 0.96542 1.02463 0.93591 0.83532 0.74644 0.75228 0.76761 1.21454 1.21578 1.21069 1.21941 0.94036 0.91244 1.56320 0.93193 1.19694 0.92664 0.92514 0.93252 0.95259 1.22629 1.00654 0.91985 1.00619 1.22916 0.96774 0.96353 0.92871 1.64844 1.18852 1.11163 1.29021 1.20740 0.92258 0.89220 0.98515 1.22252 0.99258 0.97490 0.83312 1.84150 1.50546 1.37607 1.33563 1.23926 0.99867 0.86026 1.00365 1.21608 1.03655 1.02715 0.94312 1.20785 1.06062 0.98264 0.89723 1.98335 1.88647 1.95397 1.18154 1.23283 0.95595 0.90757 0.97997 0.91454 0.91998 0.92687 0.94812 0.91983 0.87847 0.92817 0.77552 0.82743 0.91298 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.13 13.42 55.43 0.74 -26.39 16 2 C 0.02 0.59 5.33 -17.82 -0.10 0.50 16 3 Si 1.07 24.91 29.90 -169.99 -5.08 19.83 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.60 -16.44 8.42 -34.44 -0.29 -16.73 16 8 H 0.05 1.36 7.78 -52.49 -0.41 0.96 16 9 C 0.04 0.94 2.62 -89.91 -0.24 0.71 16 10 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 11 C -0.12 -2.78 5.34 -25.37 -0.14 -2.92 16 12 C 0.04 0.76 6.17 -2.75 -0.02 0.74 16 13 N -0.51 -9.75 5.26 -231.90 -1.22 -10.96 16 14 C 0.12 1.91 5.13 -4.98 -0.03 1.88 16 15 C 0.03 0.44 6.33 -35.60 -0.23 0.21 16 16 O -0.16 -2.31 10.65 5.56 0.06 -2.25 16 17 C -0.03 -0.37 12.09 29.42 0.36 -0.01 16 18 C -0.20 -2.37 10.91 -39.68 -0.43 -2.80 16 19 C -0.12 -1.69 6.72 -39.66 -0.27 -1.96 16 20 Cl -0.03 -0.47 28.88 -51.86 -1.50 -1.96 16 21 C 0.05 1.05 5.95 -1.90 -0.01 1.03 16 22 H 0.27 8.06 5.53 -40.82 -0.23 7.84 16 23 H 0.06 1.52 7.84 -51.93 -0.41 1.12 16 24 H 0.05 1.31 6.96 -51.93 -0.36 0.95 16 25 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.10 1.50 7.87 -51.93 -0.41 1.10 16 28 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 29 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.04 0.84 7.92 -51.93 -0.41 0.42 16 LS Contribution 284.22 15.07 4.28 4.28 Total: -1.00 -30.12 284.22 -8.02 -38.14 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.93 Total: -1.34 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.38 Total: -19.35 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.47 Total: -37.35 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.06 Total: -2.25 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.12 -8.02 -38.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260136308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.040 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds