Wall clock time and date at job start Mon Mar 30 2020 06:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48501 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47050 * 299.99728 * 3 2 1 6 6 H 1.48501 * 109.47043 * 60.00119 * 3 2 1 7 7 C 1.40126 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.39697 * 119.99681 * 0.02562 * 7 2 1 10 10 C 1.39590 * 126.18492 * 179.97438 * 9 7 2 11 11 C 1.39668 * 106.48699 * 180.02562 * 10 9 7 12 12 C 1.50703 * 126.32976 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47430 * 105.29483 * 12 11 10 14 14 C 1.47902 * 110.99917 * 294.31688 * 13 12 11 15 15 C 1.53994 * 107.22455 * 214.25552 * 14 13 12 16 16 C 1.54591 * 105.14074 * 1.12411 * 15 14 13 17 17 C 1.48813 * 111.18620 * 176.98049 * 13 12 11 18 18 C 1.35920 * 107.34034 * 0.25773 * 11 10 9 19 19 Cl 1.73596 * 125.41685 * 179.74133 * 18 11 10 20 20 O 1.34261 * 109.16675 * 359.56931 * 18 11 10 21 21 H 0.96992 * 120.00115 * 359.97438 * 1 2 3 22 22 H 1.08006 * 126.75536 * 359.97438 * 10 9 7 23 23 H 1.08993 * 109.47136 * 345.29020 * 12 11 10 24 24 H 1.09008 * 109.46539 * 225.29572 * 12 11 10 25 25 H 1.09002 * 109.91705 * 94.80402 * 14 13 12 26 26 H 1.08999 * 109.91518 * 333.70263 * 14 13 12 27 27 H 1.09002 * 110.31040 * 120.04307 * 15 14 13 28 28 H 1.09002 * 110.30714 * 242.21187 * 15 14 13 29 29 H 1.09004 * 110.72452 * 140.31159 * 16 15 14 30 30 H 1.09001 * 110.72817 * 263.59914 * 16 15 14 31 31 H 1.09001 * 110.51562 * 41.06830 * 17 13 12 32 32 H 1.09004 * 110.83754 * 278.09303 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0091 -1.2135 0.0005 8 1 3.0890 -1.2135 0.0001 9 6 1.3105 -2.4233 0.0005 10 6 1.8741 -3.7004 0.0005 11 6 0.8089 -4.6037 -0.0001 12 6 0.9132 -6.1071 0.0003 13 7 0.5818 -6.6208 1.3360 14 6 1.5856 -6.1907 2.3334 15 6 1.7281 -7.3314 3.3580 16 6 0.7694 -8.4393 2.8649 17 6 0.6024 -8.1086 1.3605 18 6 -0.3392 -3.8762 -0.0062 19 17 -1.9462 -4.5328 -0.0158 20 8 -0.0328 -2.5691 0.0001 21 1 -0.4850 0.8400 0.0004 22 1 2.9267 -3.9423 0.0002 23 1 1.9301 -6.4008 -0.2599 24 1 0.2176 -6.5197 -0.7306 25 1 1.2474 -5.2829 2.8330 26 1 2.5423 -6.0102 1.8432 27 1 2.7542 -7.6989 3.3748 28 1 1.4320 -6.9885 4.3494 29 1 1.2180 -9.4240 2.9957 30 1 -0.1884 -8.3788 3.3817 31 1 1.4479 -8.4884 0.7868 32 1 -0.3339 -8.5157 0.9786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260137709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:13 Heat of formation + Delta-G solvation = -5.547414 kcal Electronic energy + Delta-G solvation = -16717.465475 eV Core-core repulsion = 13897.790357 eV Total energy + Delta-G solvation = -2819.675118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43452 -38.36461 -35.49969 -33.73525 -33.07658 -30.41690 -28.90699 -28.48295 -25.29153 -24.19831 -20.89696 -20.70653 -19.96300 -19.20825 -16.85849 -15.80784 -15.66667 -15.44506 -14.96154 -14.22034 -13.74251 -13.49785 -13.22470 -12.69618 -12.29817 -11.93161 -11.66205 -11.42377 -11.18303 -11.14940 -11.04312 -10.92949 -10.80054 -10.74263 -10.57530 -10.34831 -10.13394 -9.76102 -9.51474 -8.22743 -7.90676 -7.14474 -6.90978 -4.49391 2.83482 2.90579 3.00832 3.06612 3.32060 3.82278 3.84321 4.57222 4.91744 4.94769 5.13636 5.20016 5.47853 5.53067 5.68344 5.79603 5.92614 5.95420 5.96658 6.00984 6.22969 6.29146 6.35344 6.53464 6.90336 6.98481 7.26630 7.28787 7.45156 7.56911 7.88022 7.96696 8.47719 8.59277 9.09518 10.07724 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.006066 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.861455 B = 4615.131248 C = 5242.264767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.066 3.934 3 Si 0.923 3.077 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.441 4.441 8 H 0.107 0.893 9 C 0.221 3.779 10 C -0.385 4.385 11 C -0.100 4.100 12 C 0.125 3.875 13 N -0.505 5.505 14 C 0.044 3.956 15 C -0.132 4.132 16 C -0.121 4.121 17 C 0.032 3.968 18 C -0.079 4.079 19 Cl -0.039 7.039 20 O -0.152 6.152 21 H 0.285 0.715 22 H 0.115 0.885 23 H 0.034 0.966 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -9.092 2.794 9.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.471 4.471 8 H 0.124 0.876 9 C 0.168 3.832 10 C -0.406 4.406 11 C -0.103 4.103 12 C -0.002 4.002 13 N -0.229 5.229 14 C -0.084 4.084 15 C -0.170 4.170 16 C -0.159 4.159 17 C -0.096 4.096 18 C -0.154 4.154 19 Cl -0.011 7.011 20 O -0.050 6.050 21 H 0.096 0.904 22 H 0.134 0.866 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.626 -8.612 2.904 9.110 hybrid contribution 0.993 0.363 -0.254 1.088 sum 1.620 -8.249 2.650 8.815 Atomic orbital electron populations 1.69794 1.07509 1.29846 1.32638 1.26158 0.95032 1.01982 0.92351 0.85995 0.80573 0.79981 0.78747 1.18141 1.19599 1.19600 1.18784 0.94586 0.87377 1.46330 0.87558 1.19491 0.77763 0.94102 0.91845 1.20991 0.96837 0.91091 1.31719 1.19045 0.91395 0.93289 1.06584 1.20447 0.98237 0.91645 0.89897 1.64854 1.46259 1.05883 1.05948 1.22742 0.94264 0.98097 0.93250 1.22430 0.99079 0.95980 0.99495 1.22439 0.99938 0.97792 0.95752 1.23257 1.00530 0.89595 0.96202 1.21432 0.84935 0.83768 1.25275 1.98249 1.22907 1.81965 1.97971 1.84365 1.24701 1.22113 1.73841 0.90363 0.86643 0.94778 0.91028 0.90326 0.93759 0.92041 0.91375 0.91656 0.90951 0.94357 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.58 12.01 55.56 0.67 -19.91 16 2 C 0.07 1.66 5.50 -17.27 -0.09 1.56 16 3 Si 0.92 18.26 29.56 -169.99 -5.03 13.24 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.44 -11.63 9.32 -38.33 -0.36 -11.99 16 8 H 0.11 2.60 7.85 -52.49 -0.41 2.18 16 9 C 0.22 6.09 6.79 -38.53 -0.26 5.83 16 10 C -0.39 -9.64 10.88 -38.54 -0.42 -10.06 16 11 C -0.10 -2.35 4.99 -104.92 -0.52 -2.87 16 12 C 0.13 2.39 5.02 -4.98 -0.02 2.37 16 13 N -0.51 -8.85 5.30 -231.64 -1.23 -10.07 16 14 C 0.04 0.75 6.02 -2.75 -0.02 0.73 16 15 C -0.13 -1.71 6.93 -25.38 -0.18 -1.88 16 16 C -0.12 -1.45 7.06 -24.87 -0.18 -1.62 16 17 C 0.03 0.44 6.58 -1.74 -0.01 0.43 16 18 C -0.08 -2.00 7.93 29.90 0.24 -1.77 16 19 Cl -0.04 -0.85 29.06 -51.86 -1.51 -2.35 16 20 O -0.15 -4.34 8.97 3.52 0.03 -4.31 16 21 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 22 H 0.12 2.70 8.06 -52.48 -0.42 2.28 16 23 H 0.03 0.62 7.93 -51.93 -0.41 0.21 16 24 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.04 0.77 7.64 -51.93 -0.40 0.37 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 288.02 15.07 4.34 4.34 Total: -1.00 -28.40 288.02 -8.70 -37.10 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.15 Total: 1.26 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -1.82 Total: -19.28 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: -0.56 Total: -29.99 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: 0.03 Total: -4.31 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.51 Total: -2.35 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.40 -8.70 -37.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.549 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds