Wall clock time and date at job start Mon Mar 30 2020 06:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48501 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47050 * 299.99728 * 3 2 1 6 6 H 1.48501 * 109.47043 * 60.00119 * 3 2 1 7 7 C 1.40126 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.39697 * 119.99681 * 0.02562 * 7 2 1 10 10 C 1.39590 * 126.18492 * 179.97438 * 9 7 2 11 11 C 1.39668 * 106.48699 * 180.02562 * 10 9 7 12 12 C 1.50703 * 126.32976 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47430 * 105.29483 * 12 11 10 14 14 C 1.47902 * 110.99917 * 294.31688 * 13 12 11 15 15 C 1.53994 * 107.22455 * 214.25552 * 14 13 12 16 16 C 1.54591 * 105.14074 * 1.12411 * 15 14 13 17 17 C 1.48813 * 111.18620 * 176.98049 * 13 12 11 18 18 C 1.35920 * 107.34034 * 0.25773 * 11 10 9 19 19 Cl 1.73596 * 125.41685 * 179.74133 * 18 11 10 20 20 O 1.34261 * 109.16675 * 359.56931 * 18 11 10 21 21 H 0.96992 * 120.00115 * 359.97438 * 1 2 3 22 22 H 1.08006 * 126.75536 * 359.97438 * 10 9 7 23 23 H 1.08993 * 109.47136 * 345.29020 * 12 11 10 24 24 H 1.09008 * 109.46539 * 225.29572 * 12 11 10 25 25 H 1.09002 * 109.91705 * 94.80402 * 14 13 12 26 26 H 1.08999 * 109.91518 * 333.70263 * 14 13 12 27 27 H 1.09002 * 110.31040 * 120.04307 * 15 14 13 28 28 H 1.09002 * 110.30714 * 242.21187 * 15 14 13 29 29 H 1.09004 * 110.72452 * 140.31159 * 16 15 14 30 30 H 1.09001 * 110.72817 * 263.59914 * 16 15 14 31 31 H 1.09001 * 110.51562 * 41.06830 * 17 13 12 32 32 H 1.09004 * 110.83754 * 278.09303 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0091 -1.2135 0.0005 8 1 3.0890 -1.2135 0.0001 9 6 1.3105 -2.4233 0.0005 10 6 1.8741 -3.7004 0.0005 11 6 0.8089 -4.6037 -0.0001 12 6 0.9132 -6.1071 0.0003 13 7 0.5818 -6.6208 1.3360 14 6 1.5856 -6.1907 2.3334 15 6 1.7281 -7.3314 3.3580 16 6 0.7694 -8.4393 2.8649 17 6 0.6024 -8.1086 1.3605 18 6 -0.3392 -3.8762 -0.0062 19 17 -1.9462 -4.5328 -0.0158 20 8 -0.0328 -2.5691 0.0001 21 1 -0.4850 0.8400 0.0004 22 1 2.9267 -3.9423 0.0002 23 1 1.9301 -6.4008 -0.2599 24 1 0.2176 -6.5197 -0.7306 25 1 1.2474 -5.2829 2.8330 26 1 2.5423 -6.0102 1.8432 27 1 2.7542 -7.6989 3.3748 28 1 1.4320 -6.9885 4.3494 29 1 1.2180 -9.4240 2.9957 30 1 -0.1884 -8.3788 3.3817 31 1 1.4479 -8.4884 0.7868 32 1 -0.3339 -8.5157 0.9786 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137709.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:12 Heat of formation + Delta-G solvation = -22.736503 kcal Electronic energy + Delta-G solvation = -16718.210850 eV Core-core repulsion = 13897.790357 eV Total energy + Delta-G solvation = -2820.420492 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.40371 -39.62587 -37.32310 -35.64815 -34.67684 -32.08835 -30.71978 -29.65902 -27.02260 -25.93703 -22.30985 -21.90427 -21.77850 -21.02398 -18.69757 -17.63742 -16.97507 -16.84610 -16.71261 -16.11246 -15.39451 -14.88431 -14.69793 -14.06681 -13.79483 -13.41760 -13.22526 -13.07456 -13.05506 -12.67497 -12.58824 -12.42442 -12.22749 -12.16204 -11.94261 -11.80465 -11.57794 -11.38851 -11.34447 -10.13600 -9.28614 -9.10305 -8.80011 -6.49953 1.01741 1.11424 1.38176 1.54444 1.57003 2.00852 2.15960 3.12657 3.28548 3.53227 3.81541 3.84642 4.10948 4.25050 4.37126 4.42719 4.67320 4.69094 4.78818 4.95475 5.02753 5.03915 5.09062 5.13397 5.22585 5.35117 5.36659 5.47031 5.91448 6.02866 6.09255 6.18371 6.53030 6.60699 7.09361 8.21884 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028539 B = 0.006066 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.861455 B = 4615.131248 C = 5242.264767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.021 3.979 3 Si 1.007 2.993 4 H -0.246 1.246 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.469 4.469 8 H 0.118 0.882 9 C 0.184 3.816 10 C -0.395 4.395 11 C -0.090 4.090 12 C 0.132 3.868 13 N -0.524 5.524 14 C 0.043 3.957 15 C -0.125 4.125 16 C -0.113 4.113 17 C 0.030 3.970 18 C -0.111 4.111 19 Cl -0.014 7.014 20 O -0.183 6.183 21 H 0.294 0.706 22 H 0.126 0.874 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 -10.023 3.202 10.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.197 4.197 3 Si 0.825 3.175 4 H -0.169 1.169 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.136 0.864 9 C 0.132 3.868 10 C -0.416 4.416 11 C -0.093 4.093 12 C 0.004 3.996 13 N -0.248 5.248 14 C -0.085 4.085 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.097 4.097 18 C -0.185 4.185 19 Cl 0.014 6.986 20 O -0.083 6.083 21 H 0.105 0.895 22 H 0.144 0.856 23 H 0.062 0.938 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.517 -9.583 3.316 10.253 hybrid contribution 0.653 0.573 -0.380 0.948 sum 2.170 -9.009 2.936 9.721 Atomic orbital electron populations 1.69882 1.09513 1.31492 1.33252 1.27249 0.95764 1.05783 0.90865 0.84783 0.79348 0.74302 0.79072 1.16914 1.18732 1.18814 1.19253 0.95371 0.88118 1.47050 0.86436 1.20087 0.77987 0.95654 0.93061 1.21233 0.97752 0.90898 1.31718 1.19473 0.90160 0.95519 1.04104 1.20403 0.99103 0.88727 0.91359 1.64754 1.46569 1.08648 1.04860 1.22686 0.93321 0.98492 0.93979 1.22403 1.00658 0.94825 0.98407 1.22447 0.99866 0.98743 0.94031 1.23385 1.01551 0.86798 0.97948 1.21978 0.86850 0.83228 1.26470 1.98233 1.21081 1.81354 1.97955 1.84304 1.25316 1.23959 1.74686 0.89517 0.85581 0.93805 0.90189 0.93795 0.94763 0.90157 0.90824 0.88620 0.91007 0.93126 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.47 12.01 21.87 0.26 -44.21 16 2 C 0.02 1.04 5.50 85.30 0.47 1.51 16 3 Si 1.01 37.14 29.56 68.60 2.03 39.17 16 4 H -0.25 -8.53 7.11 99.48 0.71 -7.82 16 5 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 6 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 7 C -0.47 -25.31 9.32 23.08 0.22 -25.10 16 8 H 0.12 5.82 7.85 -2.91 -0.02 5.79 16 9 C 0.18 10.53 6.79 22.95 0.16 10.69 16 10 C -0.39 -20.28 10.88 22.94 0.25 -20.03 16 11 C -0.09 -4.27 4.99 -20.06 -0.10 -4.37 16 12 C 0.13 4.94 5.02 85.56 0.43 5.37 16 13 N -0.52 -17.79 5.30 -886.79 -4.70 -22.48 16 14 C 0.04 1.44 6.02 86.45 0.52 1.96 16 15 C -0.12 -2.96 6.93 31.47 0.22 -2.74 16 16 C -0.11 -2.33 7.06 31.80 0.22 -2.10 16 17 C 0.03 0.75 6.58 86.59 0.57 1.32 16 18 C -0.11 -5.76 7.93 67.28 0.53 -5.23 16 19 Cl -0.01 -0.63 29.06 -2.72 -0.08 -0.71 16 20 O -0.18 -10.87 8.97 -10.33 -0.09 -10.96 16 21 H 0.29 14.31 8.30 -92.71 -0.77 13.55 16 22 H 0.13 6.00 8.06 -2.91 -0.02 5.98 16 23 H 0.04 1.54 7.93 -2.39 -0.02 1.52 16 24 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.18 7.64 -2.39 -0.02 1.16 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.15 8.02 -2.39 -0.02 1.13 16 32 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -63.17 288.02 2.02 -61.15 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.11 Total: 16.75 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.49 Total: -38.70 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -4.43 Total: -66.70 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.09 Total: -10.96 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -63.17 2.02 -61.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137709.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.411 kcal (2) G-P(sol) polarization free energy of solvation -63.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds