Wall clock time and date at job start Mon Mar 30 2020 06:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38190 * 119.95943 * 2 1 4 4 C 1.38666 * 119.95309 * 179.97438 * 3 2 1 5 5 O 1.35934 * 120.05558 * 179.97438 * 4 3 2 6 6 C 1.38857 * 119.88328 * 0.02562 * 4 3 2 7 7 Cl 1.73595 * 120.03685 * 179.72375 * 6 4 3 8 8 C 1.38209 * 119.92258 * 359.97438 * 6 4 3 9 9 C 1.50693 * 119.97968 * 179.97438 * 8 6 4 10 10 C 1.38230 * 119.95982 * 180.02562 * 2 1 3 11 11 C 1.50702 * 119.94149 * 0.02562 * 10 2 1 12 12 H 1.09000 * 109.47186 * 169.87707 * 11 10 2 13 13 N 1.46898 * 109.47052 * 49.87770 * 11 10 2 14 14 C 1.50697 * 109.47050 * 289.87486 * 11 10 2 15 15 H 1.08003 * 119.99933 * 0.02562 * 14 11 10 16 16 C 1.37880 * 120.00220 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99764 * 0.02562 * 16 14 11 18 18 Si 1.86793 * 120.00230 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47056 * 60.00317 * 18 16 14 20 20 H 1.48502 * 109.47256 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47200 * 300.00379 * 18 16 14 22 22 H 1.08999 * 109.47355 * 96.62543 * 1 2 3 23 23 H 1.08999 * 109.47157 * 216.62831 * 1 2 3 24 24 H 1.08996 * 109.47207 * 336.62697 * 1 2 3 25 25 H 1.08006 * 120.02625 * 0.02562 * 3 2 1 26 26 H 0.96700 * 113.99617 * 270.01711 * 5 4 3 27 27 H 1.08996 * 109.47186 * 98.06966 * 9 8 6 28 28 H 1.09001 * 109.47248 * 218.07230 * 9 8 6 29 29 H 1.09003 * 109.47544 * 338.06830 * 9 8 6 30 30 H 1.00906 * 110.99898 * 293.35143 * 13 11 10 31 31 H 1.00898 * 111.00113 * 57.31069 * 13 11 10 32 32 H 0.96998 * 119.99920 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1972 0.0000 4 6 3.5838 1.1971 0.0005 5 8 4.2647 2.3736 0.0000 6 6 4.2755 -0.0069 0.0005 7 17 6.0114 -0.0118 -0.0060 8 6 3.5803 -1.2014 0.0005 9 6 4.3296 -2.5088 -0.0001 10 6 2.1974 -1.1976 -0.0005 11 6 1.4416 -2.5014 -0.0017 12 1 2.1347 -3.3230 -0.1826 13 7 0.4243 -2.4767 -1.0611 14 6 0.7713 -2.6946 1.3341 15 1 0.8812 -1.9478 2.1065 16 6 0.0168 -3.8244 1.5698 17 7 -0.1174 -4.7336 0.6291 18 14 -0.8146 -4.0636 3.2253 19 1 -1.7587 -2.9440 3.4714 20 1 -1.5593 -5.3484 3.2243 21 1 0.2135 -4.0887 4.2966 22 1 -0.3634 -0.1186 -1.0208 23 1 -0.3633 -0.8247 0.6131 24 1 -0.3633 0.9433 0.4077 25 1 1.6569 2.1325 0.0004 26 1 4.4619 2.7135 -0.8836 27 1 4.3855 -2.8960 1.0173 28 1 3.8082 -3.2262 -0.6337 29 1 5.3373 -2.3500 -0.3842 30 1 -0.2913 -1.7945 -0.8595 31 1 0.8446 -2.3045 -1.9621 32 1 -0.6478 -5.5285 0.7951 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260163937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:06 Heat of formation + Delta-G solvation = -43.619651 kcal Electronic energy + Delta-G solvation = -17131.748769 eV Core-core repulsion = 14310.422716 eV Total energy + Delta-G solvation = -2821.326054 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19687 -38.62928 -37.51726 -35.81640 -34.41981 -33.46400 -30.66232 -28.83861 -27.68489 -27.49328 -24.08017 -21.81095 -21.74371 -18.86091 -18.71020 -17.43951 -17.16819 -16.36997 -16.09969 -15.73916 -14.98301 -14.58864 -14.45954 -14.27074 -14.09055 -13.82635 -13.54715 -13.15759 -13.03310 -12.82213 -12.64950 -12.49593 -12.29869 -11.99795 -11.89546 -11.59358 -11.35936 -11.08287 -10.48958 -9.50568 -9.29109 -8.73065 -7.95893 -6.14472 0.17194 0.29165 1.17067 1.44685 1.46571 1.52612 2.44537 2.59673 3.15799 3.28396 3.83076 3.98599 4.25099 4.32267 4.51366 4.56932 4.61196 4.70155 4.77020 4.82140 5.02198 5.14099 5.19940 5.33578 5.40391 5.48534 5.76038 5.85701 5.93552 6.21964 6.69596 6.77511 7.17551 7.33634 7.55416 9.06975 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.007070 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.280569 B = 3959.628085 C = 4331.248479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.063 4.063 3 C -0.142 4.142 4 C 0.104 3.896 5 O -0.492 6.492 6 C -0.080 4.080 7 Cl -0.060 7.060 8 C -0.074 4.074 9 C -0.110 4.110 10 C -0.101 4.101 11 C 0.260 3.740 12 H 0.028 0.972 13 N -0.830 5.830 14 C -0.534 4.534 15 H 0.044 0.956 16 C 0.040 3.960 17 N -0.876 5.876 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.279 1.279 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.155 0.845 26 H 0.406 0.594 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.335 0.665 31 H 0.307 0.693 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 11.265 -3.924 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.064 4.064 3 C -0.161 4.161 4 C 0.059 3.941 5 O -0.304 6.304 6 C -0.107 4.107 7 Cl -0.032 7.032 8 C -0.075 4.075 9 C -0.167 4.167 10 C -0.104 4.104 11 C 0.151 3.849 12 H 0.046 0.954 13 N -0.362 5.362 14 C -0.573 4.573 15 H 0.062 0.938 16 C -0.164 4.164 17 N -0.511 5.511 18 Si 0.763 3.237 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.204 1.204 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.173 0.827 26 H 0.265 0.735 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.118 0.882 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.048 10.262 -3.178 12.328 hybrid contribution 0.122 0.577 0.284 0.654 sum 6.170 10.839 -2.894 12.803 Atomic orbital electron populations 1.21148 0.90207 1.04045 1.02945 1.19885 0.97303 0.91675 0.97542 1.21376 0.92347 0.98843 1.03521 1.18030 0.89786 0.84138 1.02170 1.84798 1.75901 1.34696 1.35031 1.21295 0.84758 0.94294 1.10346 1.98302 1.09124 1.98687 1.97046 1.19723 0.93460 0.94594 0.99768 1.20803 0.99742 0.93444 1.02672 1.21312 0.92939 0.98665 0.97463 1.17916 0.89047 0.87119 0.90865 0.95398 1.59218 1.15560 1.58440 1.02976 1.20966 1.32935 1.05356 0.98018 0.93751 1.25557 0.96649 0.95662 0.98512 1.70206 1.38617 1.09091 1.33225 0.85972 0.78859 0.77356 0.81469 1.19595 1.21231 1.20435 0.90206 0.90114 0.90206 0.82735 0.73533 0.91461 0.91404 0.90082 0.84678 0.88202 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.00 71.24 0.57 -3.54 16 2 C -0.06 -2.23 5.75 -19.88 -0.11 -2.34 16 3 C -0.14 -4.28 9.61 22.36 0.21 -4.07 16 4 C 0.10 3.16 6.70 22.52 0.15 3.31 16 5 O -0.49 -12.20 12.97 -92.81 -1.20 -13.40 16 6 C -0.08 -2.64 6.33 22.41 0.14 -2.50 16 7 Cl -0.06 -1.74 26.70 -2.72 -0.07 -1.81 16 8 C -0.07 -2.76 5.88 -19.86 -0.12 -2.88 16 9 C -0.11 -3.89 9.00 71.23 0.64 -3.25 16 10 C -0.10 -4.06 4.83 -19.85 -0.10 -4.16 16 11 C 0.26 12.25 2.55 43.42 0.11 12.36 16 12 H 0.03 1.47 5.59 -2.39 -0.01 1.46 16 13 N -0.83 -36.92 8.40 -174.96 -1.47 -38.39 16 14 C -0.53 -27.87 6.61 25.60 0.17 -27.70 16 15 H 0.04 2.35 7.71 -2.91 -0.02 2.33 16 16 C 0.04 2.15 5.39 84.66 0.46 2.61 16 17 N -0.88 -49.46 12.77 21.45 0.27 -49.19 16 18 Si 0.94 42.56 29.54 68.60 2.03 44.58 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H 0.08 2.33 7.01 -2.39 -0.02 2.31 16 23 H 0.08 3.21 4.93 -2.39 -0.01 3.20 16 24 H 0.08 2.12 8.04 -2.39 -0.02 2.10 16 25 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 26 H 0.41 6.03 9.06 -74.06 -0.67 5.36 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.53 6.39 -2.39 -0.02 2.51 16 29 H 0.08 2.46 6.58 -2.39 -0.02 2.44 16 30 H 0.33 13.89 4.51 -89.69 -0.40 13.49 16 31 H 0.31 12.27 9.00 -89.70 -0.81 11.46 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -60.70 275.69 0.99 -59.71 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.69 Total: 30.65 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 2.13 Total: -32.16 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.19 Total: -87.57 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.20 Total: -13.40 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -60.70 0.99 -59.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260163937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.088 kcal (2) G-P(sol) polarization free energy of solvation -60.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds