Wall clock time and date at job start Mon Mar 30 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38171 * 119.97495 * 2 1 4 4 C 1.38694 * 119.95561 * 180.25780 * 3 2 1 5 5 O 1.35925 * 120.04258 * 179.77194 * 4 3 2 6 6 C 1.38744 * 119.91944 * 359.49029 * 4 3 2 7 7 C 1.38125 * 119.95092 * 0.25388 * 6 4 3 8 8 C 1.50699 * 119.97769 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.47442 * 144.99850 * 8 7 6 10 10 N 1.46908 * 109.47004 * 25.00050 * 8 7 6 11 11 C 1.52998 * 109.47217 * 265.00361 * 8 7 6 12 12 C 1.50705 * 109.47052 * 184.99848 * 11 8 7 13 13 H 1.08001 * 120.00162 * 359.97438 * 12 11 8 14 14 C 1.37881 * 119.99727 * 179.97438 * 12 11 8 15 15 N 1.31517 * 119.99861 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47164 * 89.99796 * 16 14 12 18 18 H 1.48503 * 109.46811 * 209.99797 * 16 14 12 19 19 H 1.48497 * 109.46934 * 329.99945 * 16 14 12 20 20 C 1.38342 * 119.98138 * 179.77024 * 2 1 3 21 21 Cl 1.73598 * 119.96014 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.46986 * 270.23013 * 1 2 3 23 23 H 1.08990 * 109.47383 * 30.23264 * 1 2 3 24 24 H 1.08999 * 109.46848 * 150.23686 * 1 2 3 25 25 H 1.08002 * 120.01699 * 0.02562 * 3 2 1 26 26 H 0.96705 * 113.99587 * 269.71902 * 5 4 3 27 27 H 1.07995 * 120.02839 * 180.28071 * 6 4 3 28 28 H 1.00905 * 110.99873 * 176.04452 * 10 8 7 29 29 H 1.00901 * 110.99822 * 300.00093 * 10 8 7 30 30 H 1.08995 * 109.47064 * 304.99726 * 11 8 7 31 31 H 1.09000 * 109.47118 * 64.99924 * 11 8 7 32 32 H 0.96990 * 119.99995 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1969 0.0000 4 6 3.5843 1.1964 -0.0054 5 8 4.2652 2.3728 -0.0101 6 6 4.2759 -0.0063 -0.0001 7 6 3.5822 -1.2007 0.0052 8 6 4.3329 -2.5074 0.0116 9 1 3.7838 -3.2390 0.6043 10 7 5.6651 -2.3040 0.5964 11 6 4.4785 -3.0189 -1.4230 12 6 5.1195 -4.3828 -1.4074 13 1 5.3959 -4.8389 -0.4682 14 6 5.3532 -5.0482 -2.5922 15 7 5.9131 -6.2382 -2.5786 16 14 4.8759 -4.2590 -4.2166 17 1 6.0147 -3.4566 -4.7307 18 1 4.5329 -5.3181 -5.1995 19 1 3.7005 -3.3751 -4.0110 20 6 2.1983 -1.1983 0.0048 21 17 1.3288 -2.7008 0.0115 22 1 -0.3633 0.0041 1.0277 23 1 -0.3633 0.8878 -0.5174 24 1 -0.3633 -0.8921 -0.5101 25 1 1.6572 2.1322 0.0004 26 1 4.4625 2.7095 -0.8949 27 1 5.3559 -0.0087 0.0003 28 1 6.1644 -3.1777 0.6713 29 1 6.1943 -1.6294 0.0645 30 1 3.4943 -3.0854 -1.8866 31 1 5.1027 -2.3305 -1.9926 32 1 6.0778 -6.7061 -3.4120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260168921.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:35 Heat of formation + Delta-G solvation = -38.433027 kcal Electronic energy + Delta-G solvation = -16702.907510 eV Core-core repulsion = 13881.806365 eV Total energy + Delta-G solvation = -2821.101145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94333 -37.40190 -36.03961 -35.53836 -32.69900 -31.58904 -29.60779 -28.63161 -26.84814 -24.70199 -22.15984 -21.54326 -19.51532 -17.95971 -17.04606 -16.53891 -16.34012 -15.16245 -14.59377 -14.28996 -13.85656 -13.64276 -13.46813 -13.08935 -12.83794 -12.45408 -12.27329 -12.12136 -11.91116 -11.65991 -11.07562 -11.00426 -10.80673 -10.50501 -10.37894 -10.24890 -9.79368 -9.28258 -8.64537 -8.59060 -8.30070 -7.86862 -6.13882 -4.13276 1.18961 1.38367 2.45772 3.23021 3.31884 3.36265 3.57729 4.19155 4.36902 4.75734 4.84337 5.14379 5.21197 5.34116 5.48928 5.56560 5.59023 5.72840 5.82891 5.96667 6.21169 6.29842 6.40798 6.46268 6.62074 6.74097 7.03677 7.16844 7.62834 7.64859 7.85893 8.13631 8.40267 8.88585 9.48164 10.98777 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.007354 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.637781 B = 3806.441452 C = 4263.944751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.151 4.151 4 C 0.109 3.891 5 O -0.499 6.499 6 C -0.129 4.129 7 C -0.027 4.027 8 C 0.132 3.868 9 H 0.094 0.906 10 N -0.839 5.839 11 C -0.034 4.034 12 C -0.522 4.522 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.875 3.125 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.265 1.265 20 C -0.047 4.047 21 Cl -0.058 7.058 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.131 0.869 26 H 0.389 0.611 27 H 0.138 0.862 28 H 0.355 0.645 29 H 0.328 0.672 30 H 0.025 0.975 31 H 0.010 0.990 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 14.541 3.133 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.065 4.065 3 C -0.170 4.170 4 C 0.064 3.936 5 O -0.309 6.309 6 C -0.148 4.148 7 C -0.028 4.028 8 C 0.020 3.980 9 H 0.112 0.888 10 N -0.369 5.369 11 C -0.073 4.073 12 C -0.560 4.560 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.074 4.074 21 Cl -0.028 7.028 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.149 0.851 26 H 0.244 0.756 27 H 0.156 0.844 28 H 0.169 0.831 29 H 0.140 0.860 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.547 14.436 4.285 17.315 hybrid contribution 0.199 -0.111 -2.449 2.459 sum -8.348 14.325 1.837 16.681 Atomic orbital electron populations 1.20845 0.90307 1.03342 1.02804 1.19526 0.96490 0.90875 0.99577 1.21057 0.93314 0.97535 1.05110 1.18452 0.89765 0.85184 1.00180 1.84816 1.76399 1.36265 1.33375 1.21180 1.01051 0.90369 1.02161 1.19959 0.91404 0.96658 0.94786 1.20410 0.89936 0.90524 0.97107 0.88832 1.59269 1.04861 1.16521 1.56203 1.20259 0.97636 0.97209 0.92176 1.20994 1.40098 1.00117 0.94797 0.90695 1.24969 0.94389 0.94610 0.99040 1.69899 1.43069 1.13229 1.27409 0.86844 0.79588 0.79384 0.83945 1.20363 1.21249 1.18933 1.20673 0.91911 0.87102 1.07700 1.98360 1.76043 1.31736 1.96702 0.90726 0.91330 0.90662 0.85145 0.75589 0.84395 0.83067 0.86040 0.95678 0.97169 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.61 36.01 0.35 -0.93 16 2 C -0.06 -0.89 5.88 -104.61 -0.62 -1.51 16 3 C -0.15 -1.98 9.64 -39.44 -0.38 -2.36 16 4 C 0.11 1.52 6.70 -39.23 -0.26 1.26 16 5 O -0.50 -5.95 13.50 -19.50 -0.26 -6.21 16 6 C -0.13 -2.04 9.21 -39.44 -0.36 -2.40 16 7 C -0.03 -0.47 5.06 -104.61 -0.53 -1.00 16 8 C 0.13 2.62 2.50 -68.86 -0.17 2.45 16 9 H 0.09 1.98 7.12 -51.93 -0.37 1.61 16 10 N -0.84 -15.40 8.79 -5.65 -0.05 -15.45 16 11 C -0.03 -0.79 3.67 -27.88 -0.10 -0.89 16 12 C -0.52 -14.15 9.10 -34.44 -0.31 -14.47 16 13 H 0.08 2.16 7.39 -52.49 -0.39 1.78 16 14 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 16 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 20 C -0.05 -0.78 6.31 -39.49 -0.25 -1.03 16 21 Cl -0.06 -0.96 25.52 -51.86 -1.32 -2.29 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 24 H 0.07 0.85 6.90 -51.93 -0.36 0.49 16 25 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.39 2.74 9.06 45.56 0.41 3.15 16 27 H 0.14 2.08 6.29 -52.49 -0.33 1.75 16 28 H 0.35 6.85 7.90 -39.29 -0.31 6.54 16 29 H 0.33 5.55 7.21 -39.29 -0.28 5.26 16 30 H 0.02 0.60 7.00 -51.93 -0.36 0.24 16 31 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -30.80 282.18 -6.83 -37.63 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -2.81 Total: 10.40 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.74 Total: -18.93 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.72 Total: -41.64 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.26 Total: -6.21 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.32 Total: -2.29 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.80 -6.83 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168921.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds