Wall clock time and date at job start Mon Mar 30 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00044 * 2 1 4 4 H 1.48496 * 109.46964 * 270.00065 * 3 2 1 5 5 H 1.48496 * 109.46775 * 30.00426 * 3 2 1 6 6 H 1.48501 * 109.46737 * 149.99793 * 3 2 1 7 7 C 1.37882 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99733 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47233 * 179.54305 * 9 7 2 11 11 H 1.08997 * 109.47023 * 54.03294 * 10 9 7 12 12 C 1.53001 * 109.47116 * 294.02970 * 10 9 7 13 13 N 1.46896 * 109.46846 * 176.69663 * 12 10 9 14 14 C 1.50705 * 109.47009 * 174.02934 * 10 9 7 15 15 C 1.38275 * 119.95782 * 59.99938 * 14 10 9 16 16 C 1.38253 * 120.11656 * 179.97438 * 15 14 10 17 17 C 1.38252 * 120.04117 * 0.04833 * 16 15 14 18 18 Cl 1.73596 * 120.03892 * 179.70063 * 17 16 15 19 19 C 1.38819 * 119.92650 * 359.97438 * 17 16 15 20 20 O 1.35926 * 120.06267 * 179.97438 * 19 17 16 21 21 C 1.38146 * 119.95783 * 239.97900 * 14 10 9 22 22 H 0.96992 * 120.00075 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46794 * 59.54133 * 9 7 2 24 24 H 1.09002 * 109.46890 * 299.54552 * 9 7 2 25 25 H 1.09001 * 109.46897 * 296.69852 * 12 10 9 26 26 H 1.08999 * 109.46794 * 56.69161 * 12 10 9 27 27 H 1.00907 * 110.99891 * 174.64809 * 13 12 10 28 28 H 1.00898 * 111.00494 * 298.60119 * 13 12 10 29 29 H 1.08001 * 119.94573 * 0.02562 * 15 14 10 30 30 H 1.07999 * 119.97865 * 180.02562 * 16 15 14 31 31 H 0.96701 * 113.99195 * 90.00333 * 20 19 17 32 32 H 1.07994 * 120.02797 * 0.02562 * 21 14 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0127 11 1 2.9462 -3.5495 0.8144 12 6 3.0136 -3.6625 -1.3358 13 7 4.0225 -4.7299 -1.3158 14 6 1.4987 -4.9628 0.1351 15 6 0.5493 -5.3245 -0.8029 16 6 -0.1372 -6.5172 -0.6709 17 6 0.1237 -7.3510 0.4007 18 17 -0.7439 -8.8450 0.5706 19 6 1.0761 -6.9894 1.3437 20 8 1.3344 -7.8068 2.3985 21 6 1.7640 -5.7926 1.2073 22 1 -0.4850 0.8400 0.0004 23 1 0.6180 -2.5532 -0.8861 24 1 0.6309 -2.5607 0.8938 25 1 2.3196 -3.8337 -2.1588 26 1 3.5060 -2.6994 -1.4703 27 1 4.4841 -4.8080 -2.2097 28 1 4.6915 -4.5814 -0.5752 29 1 0.3442 -4.6745 -1.6407 30 1 -0.8780 -6.7977 -1.4050 31 1 2.0325 -8.4550 2.2320 32 1 2.5056 -5.5092 1.9394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184682.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:03 Heat of formation + Delta-G solvation = -43.813031 kcal Electronic energy + Delta-G solvation = -16437.666191 eV Core-core repulsion = 13616.331751 eV Total energy + Delta-G solvation = -2821.334439 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67124 -37.25247 -36.32788 -35.12050 -32.91009 -31.41362 -29.93448 -28.66564 -25.55532 -23.05562 -22.59339 -22.07967 -19.66372 -17.68506 -16.68199 -16.33263 -15.64291 -15.29762 -15.03454 -14.48133 -14.05981 -13.80795 -13.43189 -12.97460 -12.58328 -12.34597 -11.83755 -11.66542 -11.49421 -11.26277 -11.08827 -10.88780 -10.68748 -10.59364 -10.27975 -9.90073 -9.56828 -9.19758 -8.53626 -8.45245 -8.25030 -8.02716 -6.07591 -4.10903 1.44259 1.55557 2.35374 3.25781 3.33286 3.35095 3.86510 4.30560 4.39710 5.01084 5.05501 5.28212 5.32369 5.55813 5.60759 5.75214 5.90230 6.09262 6.12580 6.39954 6.45307 6.52127 6.64014 6.76319 7.02367 7.05543 7.48069 7.58679 7.67770 7.73325 7.77931 7.90584 8.29738 8.94431 9.53365 11.03296 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.031059 B = 0.005009 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.280338 B = 5588.566717 C = 5877.526487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.032 3.968 10 C -0.047 4.047 11 H 0.067 0.933 12 C 0.075 3.925 13 N -0.854 5.854 14 C -0.008 4.008 15 C -0.107 4.107 16 C -0.097 4.097 17 C -0.079 4.079 18 Cl -0.079 7.079 19 C 0.111 3.889 20 O -0.491 6.491 21 C -0.131 4.131 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.021 0.979 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.332 0.668 28 H 0.334 0.666 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.386 0.614 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -13.682 -1.446 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.066 4.066 11 H 0.085 0.915 12 C -0.055 4.055 13 N -0.382 5.382 14 C -0.008 4.008 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.106 4.106 18 Cl -0.051 7.051 19 C 0.065 3.935 20 O -0.300 6.300 21 C -0.150 4.150 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.143 0.857 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.241 0.759 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.737 -13.855 -1.004 14.158 hybrid contribution 1.336 1.325 -0.355 1.915 sum 4.073 -12.530 -1.359 13.245 Atomic orbital electron populations 1.69957 1.06031 1.26742 1.50297 1.25002 0.94805 0.99186 0.95224 0.86627 0.79863 0.83630 0.78083 1.20685 1.21174 1.19921 1.21165 0.92848 0.90776 1.51189 0.92657 1.19149 0.93343 0.90173 0.97864 1.20465 0.97460 0.91641 0.97028 0.91473 1.21830 0.93917 0.92134 0.97636 1.58836 1.20068 1.50641 1.08681 1.20042 0.93581 0.95281 0.91897 1.21009 0.95918 0.95536 1.00026 1.20888 1.00180 0.93995 0.96538 1.21207 1.00328 0.90551 0.98475 1.98324 1.75820 1.33215 1.97717 1.18121 0.96047 0.91860 0.87432 1.84848 1.60135 1.49456 1.35583 1.21232 1.00751 0.93956 0.99054 0.92875 0.95995 0.96087 0.91598 0.93682 0.85702 0.85491 0.85028 0.85253 0.75919 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.52 -13.76 8.36 -34.44 -0.29 -14.05 16 8 H 0.06 1.41 7.15 -52.49 -0.38 1.03 16 9 C 0.03 0.78 4.16 -27.88 -0.12 0.66 16 10 C -0.05 -0.89 2.17 -91.77 -0.20 -1.09 16 11 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 12 C 0.07 1.27 5.92 -3.83 -0.02 1.25 16 13 N -0.85 -11.77 9.26 -10.37 -0.10 -11.86 16 14 C -0.01 -0.13 4.46 -104.64 -0.47 -0.60 16 15 C -0.11 -1.77 8.73 -39.56 -0.35 -2.12 16 16 C -0.10 -1.47 9.83 -39.57 -0.39 -1.86 16 17 C -0.08 -1.20 6.33 -39.36 -0.25 -1.45 16 18 Cl -0.08 -1.08 28.50 -51.86 -1.48 -2.56 16 19 C 0.11 1.71 6.70 -39.19 -0.26 1.45 16 20 O -0.49 -6.66 12.96 -19.51 -0.25 -6.91 16 21 C -0.13 -2.14 9.61 -39.44 -0.38 -2.51 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.02 0.55 7.60 -51.93 -0.39 0.16 16 24 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.12 7.27 -51.93 -0.38 0.75 16 26 H 0.04 0.83 6.94 -51.93 -0.36 0.47 16 27 H 0.33 3.90 9.08 -39.29 -0.36 3.54 16 28 H 0.33 4.26 9.05 -39.29 -0.36 3.91 16 29 H 0.13 2.15 7.15 -52.49 -0.38 1.77 16 30 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.39 3.40 9.06 45.56 0.41 3.81 16 32 H 0.13 1.98 7.94 -52.49 -0.42 1.56 16 LS Contribution 290.24 15.07 4.37 4.37 Total: -1.00 -29.70 290.24 -7.54 -37.24 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.99 Total: 7.84 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -2.82 Total: -18.79 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.64 Total: -37.03 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.25 Total: -6.91 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.48 Total: -2.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.70 -7.54 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184682.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.569 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds