Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38166 * 119.96623 * 2 1 4 4 C 1.38727 * 119.96774 * 179.97438 * 3 2 1 5 5 O 1.35904 * 120.04673 * 179.97438 * 4 3 2 6 6 C 1.38725 * 119.90038 * 359.70574 * 4 3 2 7 7 C 1.50706 * 120.03505 * 180.29811 * 6 4 3 8 8 H 1.08998 * 109.47375 * 193.72789 * 7 6 4 9 9 N 1.46901 * 109.46875 * 313.72766 * 7 6 4 10 10 C 1.53003 * 109.47121 * 73.72339 * 7 6 4 11 11 C 1.50704 * 109.46992 * 175.00411 * 10 7 6 12 12 H 1.08000 * 119.99622 * 0.02562 * 11 10 7 13 13 C 1.37873 * 119.99737 * 180.02562 * 11 10 7 14 14 N 1.31513 * 120.00466 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99610 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47455 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47286 * 119.99852 * 15 13 11 18 18 H 1.48501 * 109.47362 * 239.99588 * 15 13 11 19 19 C 1.38232 * 119.93284 * 0.56495 * 6 4 3 20 20 Cl 1.73609 * 119.98694 * 179.72814 * 19 6 4 21 21 C 1.38223 * 119.96366 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47234 * 270.02867 * 1 2 3 23 23 H 1.09001 * 109.46855 * 30.02565 * 1 2 3 24 24 H 1.08998 * 109.47712 * 150.02536 * 1 2 3 25 25 H 1.08000 * 120.01871 * 359.95202 * 3 2 1 26 26 H 0.96700 * 113.99472 * 90.00528 * 5 4 3 27 27 H 1.00901 * 111.00003 * 307.39047 * 9 7 6 28 28 H 1.00902 * 111.00313 * 71.34169 * 9 7 6 29 29 H 1.09002 * 109.47315 * 295.00074 * 10 7 6 30 30 H 1.08996 * 109.47416 * 55.00540 * 10 7 6 31 31 H 0.96996 * 119.99796 * 180.02562 * 14 13 11 32 32 H 1.07999 * 119.94857 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1970 0.0000 4 6 3.5844 1.1970 0.0005 5 8 4.2648 2.3734 0.0000 6 6 4.2759 -0.0056 0.0073 7 6 5.7830 -0.0090 0.0146 8 1 6.1452 -1.0088 -0.2247 9 7 6.2797 0.9444 -0.9864 10 6 6.2871 0.3979 1.4007 11 6 7.7886 0.2763 1.4448 12 1 8.3291 -0.0575 0.5714 13 6 8.4721 0.5910 2.6001 14 7 7.8139 0.9979 3.6635 15 14 10.3331 0.4396 2.6549 16 1 10.8302 -0.0346 1.3384 17 1 10.9290 1.7652 2.9601 18 1 10.7199 -0.5316 3.7096 19 6 3.5814 -1.2007 0.0016 20 17 4.4455 -2.7065 0.0028 21 6 2.1973 -1.1975 0.0005 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 1.6569 2.1321 -0.0008 26 1 4.4614 2.7144 0.8833 27 1 5.8649 0.7695 -1.8895 28 1 6.1169 1.8957 -0.6919 29 1 6.0002 1.4298 1.6033 30 1 5.8474 -0.2560 2.1538 31 1 8.2948 1.2197 4.4761 32 1 1.6559 -2.1320 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260187100.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -61.240602 kcal Electronic energy + Delta-G solvation = -16808.277052 eV Core-core repulsion = 13986.186897 eV Total energy + Delta-G solvation = -2822.090155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.26208 -38.17299 -37.46967 -36.76439 -34.57799 -32.67571 -30.81950 -30.16084 -28.17858 -25.60279 -23.79220 -22.90251 -21.53942 -18.87147 -18.58008 -17.57021 -16.93281 -16.59011 -16.33576 -16.06526 -15.46197 -14.99684 -14.56226 -14.44961 -14.03757 -13.65128 -13.47569 -13.31156 -13.16619 -12.88018 -12.58471 -12.48960 -12.38451 -12.03824 -11.80022 -11.57057 -11.37186 -11.18868 -10.51882 -9.65620 -9.63314 -9.20244 -8.13865 -6.19063 0.08277 0.14182 1.12976 1.40658 1.41947 1.55566 2.41585 2.47166 3.19376 3.20978 3.71701 3.91574 3.95320 4.15944 4.26656 4.39522 4.61618 4.64699 4.84744 4.86696 4.94332 5.12570 5.18696 5.27539 5.43192 5.43992 5.66060 5.74549 5.85181 6.30447 6.55851 6.65955 6.86863 6.93436 7.47541 8.97873 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026366 B = 0.006513 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.725393 B = 4298.141511 C = 4771.939177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.063 4.063 3 C -0.143 4.143 4 C 0.116 3.884 5 O -0.498 6.498 6 C -0.154 4.154 7 C 0.144 3.856 8 H 0.070 0.930 9 N -0.825 5.825 10 C 0.050 3.950 11 C -0.507 4.507 12 H 0.055 0.945 13 C 0.001 3.999 14 N -0.935 5.935 15 Si 0.957 3.043 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.281 1.281 19 C -0.028 4.028 20 Cl -0.070 7.070 21 C -0.124 4.124 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.155 0.845 26 H 0.403 0.597 27 H 0.330 0.670 28 H 0.348 0.652 29 H 0.003 0.997 30 H -0.013 1.013 31 H 0.260 0.740 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 -1.457 -7.452 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.064 4.064 3 C -0.161 4.161 4 C 0.070 3.930 5 O -0.311 6.311 6 C -0.158 4.158 7 C 0.032 3.968 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.013 3.987 11 C -0.545 4.545 12 H 0.073 0.927 13 C -0.196 4.196 14 N -0.576 5.576 15 Si 0.783 3.217 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.056 4.056 20 Cl -0.041 7.041 21 C -0.143 4.143 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.173 0.827 26 H 0.263 0.737 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.021 0.979 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.947 -1.878 -7.737 16.935 hybrid contribution 0.439 0.149 0.863 0.979 sum -14.508 -1.729 -6.874 16.147 Atomic orbital electron populations 1.20857 0.87307 1.04469 1.03763 1.20062 0.98208 0.90929 0.97182 1.21622 0.92272 1.00017 1.02176 1.18264 0.90386 0.84310 0.99995 1.84641 1.76129 1.35177 1.35137 1.21416 0.99402 0.92510 1.02429 1.20396 0.85119 0.97054 0.94201 0.91205 1.58943 1.64654 1.07913 1.04141 1.18874 0.95139 0.94735 0.89924 1.21468 0.93065 1.42779 0.97216 0.92716 1.25802 1.02909 0.95445 0.95445 1.70071 1.37043 1.47513 1.03009 0.85517 0.80528 0.77703 0.77994 1.19289 1.20454 1.20732 1.20860 0.93039 0.86405 1.05273 1.98351 1.77603 1.31294 1.96874 1.21203 0.90701 1.00218 1.02132 0.89699 0.89818 0.89808 0.82747 0.73738 0.85851 0.83526 0.97855 0.99465 0.93085 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.06 -1.40 5.88 -19.89 -0.12 -1.52 16 3 C -0.14 -3.55 9.64 22.37 0.22 -3.34 16 4 C 0.12 3.66 6.47 22.50 0.15 3.81 16 5 O -0.50 -15.37 10.13 -92.47 -0.94 -16.31 16 6 C -0.15 -5.60 4.85 -19.75 -0.10 -5.69 16 7 C 0.14 6.21 2.67 44.17 0.12 6.33 16 8 H 0.07 3.20 6.33 -2.39 -0.02 3.18 16 9 N -0.82 -33.26 8.75 -171.79 -1.50 -34.77 16 10 C 0.05 2.64 4.40 29.85 0.13 2.77 16 11 C -0.51 -29.29 8.84 25.60 0.23 -29.06 16 12 H 0.05 3.20 7.74 -2.91 -0.02 3.18 16 13 C 0.00 0.04 5.46 84.65 0.46 0.50 16 14 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 15 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 C -0.03 -0.93 6.31 22.31 0.14 -0.79 16 20 Cl -0.07 -2.34 27.06 -2.72 -0.07 -2.41 16 21 C -0.12 -3.17 9.48 22.31 0.21 -2.96 16 22 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 24 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 25 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 26 H 0.40 11.22 8.21 -74.06 -0.61 10.61 16 27 H 0.33 11.78 8.94 -89.69 -0.80 10.98 16 28 H 0.35 13.81 6.39 -89.69 -0.57 13.24 16 29 H 0.00 0.17 6.80 -2.39 -0.02 0.16 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -66.81 285.38 1.14 -65.67 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.81 Total: 26.93 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 2.15 Total: -30.68 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -1.22 Total: -91.04 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.94 Total: -16.31 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.41 kcal Total: -66.81 1.14 -65.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187100.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.433 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds