Wall clock time and date at job start Mon Mar 30 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.34510 * 125.77868 * 99.71589 * 12 9 7 14 14 C 1.41444 * 106.84718 * 179.88441 * 13 12 9 15 15 Cl 1.73599 * 126.58762 * 180.12152 * 14 13 12 16 16 C 1.34584 * 106.82402 * 0.37400 * 14 13 12 17 17 C 1.50696 * 125.80237 * 179.74900 * 16 14 13 18 18 C 1.53778 * 113.61843 * 219.13809 * 17 16 14 19 19 C 1.53952 * 87.02282 * 220.04706 * 18 17 16 20 20 C 1.53774 * 113.61733 * 121.52517 * 17 16 14 21 21 O 1.34299 * 125.77569 * 280.02029 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 24 24 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 25 25 H 1.07999 * 126.57951 * 0.02562 * 13 12 9 26 26 H 1.09008 * 112.84769 * 350.33197 * 17 16 14 27 27 H 1.09007 * 113.61094 * 334.56650 * 18 17 16 28 28 H 1.09000 * 113.61904 * 105.46676 * 18 17 16 29 29 H 1.09002 * 113.53622 * 270.81261 * 19 18 17 30 30 H 1.09001 * 113.74747 * 139.93680 * 19 18 17 31 31 H 1.09001 * 113.62085 * 254.53359 * 20 17 16 32 32 H 1.09002 * 113.61338 * 25.43315 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.6012 -4.3669 1.0621 14 6 3.5274 -5.3332 0.6051 15 17 4.3281 -6.5356 1.5678 16 6 3.6731 -5.1378 -0.7185 17 6 4.5687 -5.9324 -1.6336 18 6 5.2775 -5.0771 -2.6971 19 6 5.0086 -6.2266 -3.6852 20 6 3.8189 -6.6133 -2.7907 21 8 2.8846 -4.1134 -1.0854 22 1 -0.4850 0.8401 -0.0004 23 1 0.9645 -2.5165 -2.0440 24 1 -0.1576 -3.4083 -1.2004 25 1 2.2561 -4.2357 2.0770 26 1 5.2388 -6.6015 -1.0938 27 1 4.7467 -4.1572 -2.9424 28 1 6.3358 -4.9146 -2.4925 29 1 5.7999 -6.9759 -3.7071 30 1 4.7158 -5.8908 -4.6800 31 1 3.7012 -7.6892 -2.6616 32 1 2.8885 -6.1143 -3.0617 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260193201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:09 Heat of formation + Delta-G solvation = 19.424698 kcal Electronic energy + Delta-G solvation = -16710.483519 eV Core-core repulsion = 13891.891274 eV Total energy + Delta-G solvation = -2818.592246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.15175 -38.45803 -36.32335 -34.64749 -32.20108 -31.56735 -29.26888 -26.38819 -25.61926 -24.76704 -22.03274 -21.28807 -19.91036 -19.13149 -16.81806 -16.53419 -15.56424 -15.37047 -14.96188 -14.27313 -14.24081 -13.40936 -13.04320 -12.81205 -12.57347 -12.45157 -12.28460 -12.16249 -11.94690 -11.46184 -11.05677 -10.90197 -10.77654 -10.50230 -10.47760 -10.25020 -10.06847 -9.42716 -8.96265 -8.53930 -7.69620 -7.29426 -5.99337 -4.15528 2.13051 2.43859 3.02697 3.28761 3.37180 3.41587 3.48661 4.41644 4.58329 4.65602 4.70660 4.90397 5.23368 5.26590 5.49308 5.55455 5.66461 5.79856 5.86404 5.94923 6.02884 6.11173 6.19926 6.30494 6.44316 6.54966 6.91841 7.07601 7.69288 7.80232 7.98166 8.46931 8.85427 8.97662 9.53716 11.04798 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.006340 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.162539 B = 4415.391165 C = 4917.749972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.086 3.914 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.057 0.943 9 C 0.295 3.705 10 H 0.072 0.928 11 N -0.807 5.807 12 C 0.031 3.969 13 C -0.236 4.236 14 C -0.115 4.115 15 Cl -0.058 7.058 16 C -0.017 4.017 17 C -0.030 4.030 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.131 4.131 21 O -0.156 6.156 22 H 0.258 0.742 23 H 0.325 0.675 24 H 0.302 0.698 25 H 0.148 0.852 26 H 0.114 0.886 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 -12.300 -3.507 14.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.122 4.122 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.075 0.925 9 C 0.184 3.816 10 H 0.090 0.910 11 N -0.332 5.332 12 C -0.023 4.023 13 C -0.256 4.256 14 C -0.143 4.143 15 Cl -0.030 7.030 16 C -0.068 4.068 17 C -0.049 4.049 18 C -0.170 4.170 19 C -0.179 4.179 20 C -0.168 4.168 21 O -0.052 6.052 22 H 0.068 0.932 23 H 0.137 0.863 24 H 0.113 0.887 25 H 0.166 0.834 26 H 0.131 0.869 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.156 -11.488 -3.456 13.969 hybrid contribution 1.153 -0.167 0.307 1.204 sum 8.309 -11.655 -3.149 14.656 Atomic orbital electron populations 1.70099 1.05706 1.26061 1.46064 1.24915 0.94710 0.98704 0.93831 0.86592 0.80252 0.83777 0.77657 1.19782 1.20853 1.20880 1.20820 0.92517 0.89017 1.55293 0.92452 1.18196 0.85191 0.85969 0.92197 0.91005 1.59062 1.27744 1.41978 1.04409 1.25428 0.96313 0.97551 0.82966 1.21302 1.04122 0.99318 1.00897 1.20855 1.03776 0.98036 0.91624 1.98276 1.78773 1.54744 1.71209 1.21643 0.99182 0.93297 0.92680 1.21105 0.95090 0.96053 0.92611 1.23005 1.00783 0.98122 0.95131 1.22856 0.98285 0.98434 0.98293 1.22966 0.98258 1.00520 0.95055 1.84055 1.45645 1.38946 1.36561 0.93174 0.86264 0.88749 0.83386 0.86853 0.89090 0.91099 0.90151 0.91071 0.91139 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.89 12.76 55.43 0.71 -23.18 16 2 C 0.09 2.34 5.39 -17.82 -0.10 2.25 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.54 -14.56 8.71 -34.44 -0.30 -14.86 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.29 7.16 3.07 -70.02 -0.22 6.95 16 10 H 0.07 1.86 8.13 -51.93 -0.42 1.44 16 11 N -0.81 -18.56 8.51 -6.65 -0.06 -18.61 16 12 C 0.03 0.67 6.07 -35.63 -0.22 0.45 16 13 C -0.24 -4.75 10.80 -39.68 -0.43 -5.18 16 14 C -0.11 -2.09 6.72 -39.65 -0.27 -2.35 16 15 Cl -0.06 -0.89 28.72 -51.86 -1.49 -2.38 16 16 C -0.02 -0.30 6.33 -35.60 -0.23 -0.52 16 17 C -0.03 -0.41 4.09 -90.97 -0.37 -0.79 16 18 C -0.13 -1.66 7.64 -25.83 -0.20 -1.86 16 19 C -0.14 -1.44 8.09 -25.83 -0.21 -1.65 16 20 C -0.13 -1.54 7.63 -25.92 -0.20 -1.73 16 21 O -0.16 -3.15 10.27 5.53 0.06 -3.09 16 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.33 7.30 8.88 -39.29 -0.35 6.95 16 24 H 0.30 6.17 9.06 -39.29 -0.36 5.82 16 25 H 0.15 2.82 8.06 -52.49 -0.42 2.39 16 26 H 0.11 1.41 7.68 -51.92 -0.40 1.01 16 27 H 0.09 1.30 7.87 -51.93 -0.41 0.89 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -28.30 292.07 -8.14 -36.44 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.01 Total: 9.72 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.72 Total: -19.29 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.65 Total: -41.79 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: 0.06 Total: -3.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.49 Total: -2.38 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.30 -8.14 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.862 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds