Wall clock time and date at job start Mon Mar 30 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.34510 * 125.77868 * 99.71589 * 12 9 7 14 14 C 1.41444 * 106.84718 * 179.88441 * 13 12 9 15 15 Cl 1.73599 * 126.58762 * 180.12152 * 14 13 12 16 16 C 1.34584 * 106.82402 * 0.37400 * 14 13 12 17 17 C 1.50696 * 125.80237 * 179.74900 * 16 14 13 18 18 C 1.53778 * 113.61843 * 219.13809 * 17 16 14 19 19 C 1.53952 * 87.02282 * 220.04706 * 18 17 16 20 20 C 1.53774 * 113.61733 * 121.52517 * 17 16 14 21 21 O 1.34299 * 125.77569 * 280.02029 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 24 24 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 25 25 H 1.07999 * 126.57951 * 0.02562 * 13 12 9 26 26 H 1.09008 * 112.84769 * 350.33197 * 17 16 14 27 27 H 1.09007 * 113.61094 * 334.56650 * 18 17 16 28 28 H 1.09000 * 113.61904 * 105.46676 * 18 17 16 29 29 H 1.09002 * 113.53622 * 270.81261 * 19 18 17 30 30 H 1.09001 * 113.74747 * 139.93680 * 19 18 17 31 31 H 1.09001 * 113.62085 * 254.53359 * 20 17 16 32 32 H 1.09002 * 113.61338 * 25.43315 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.6012 -4.3669 1.0621 14 6 3.5274 -5.3332 0.6051 15 17 4.3281 -6.5356 1.5678 16 6 3.6731 -5.1378 -0.7185 17 6 4.5687 -5.9324 -1.6336 18 6 5.2775 -5.0771 -2.6971 19 6 5.0086 -6.2266 -3.6852 20 6 3.8189 -6.6133 -2.7907 21 8 2.8846 -4.1134 -1.0854 22 1 -0.4850 0.8401 -0.0004 23 1 0.9645 -2.5165 -2.0440 24 1 -0.1576 -3.4083 -1.2004 25 1 2.2561 -4.2357 2.0770 26 1 5.2388 -6.6015 -1.0938 27 1 4.7467 -4.1572 -2.9424 28 1 6.3358 -4.9146 -2.4925 29 1 5.7999 -6.9759 -3.7071 30 1 4.7158 -5.8908 -4.6800 31 1 3.7012 -7.6892 -2.6616 32 1 2.8885 -6.1143 -3.0617 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260193201.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:09 Heat of formation + Delta-G solvation = 2.658516 kcal Electronic energy + Delta-G solvation = -16711.210555 eV Core-core repulsion = 13891.891274 eV Total energy + Delta-G solvation = -2819.319282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.66866 -39.46401 -37.64235 -36.54274 -33.78751 -33.51357 -30.72553 -28.24440 -26.57032 -26.21872 -23.67015 -22.81980 -21.36855 -20.26356 -18.71233 -18.01072 -17.04242 -16.77170 -16.40691 -16.13188 -15.89255 -14.74590 -14.59461 -14.41418 -14.03400 -13.67837 -13.52506 -13.39936 -13.33175 -13.16923 -12.78070 -12.69830 -12.16442 -12.01705 -11.57008 -11.45948 -11.36618 -11.29172 -10.63116 -10.47510 -9.31270 -9.02896 -8.06554 -6.29685 0.65870 1.05437 1.40930 1.41502 1.47071 1.55316 2.00317 2.44174 3.18028 3.52774 3.62162 3.70563 3.94138 3.97367 4.07391 4.29203 4.47613 4.68235 4.71984 4.81229 4.82640 5.00097 5.01403 5.09031 5.12882 5.22870 5.34211 5.52995 5.67339 5.95919 6.14302 6.52502 6.92912 7.10555 7.42912 8.96870 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.006340 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.162539 B = 4415.391165 C = 4917.749972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.042 3.958 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.043 0.957 9 C 0.301 3.699 10 H 0.048 0.952 11 N -0.814 5.814 12 C 0.001 3.999 13 C -0.234 4.234 14 C -0.132 4.132 15 Cl -0.030 7.030 16 C -0.004 4.004 17 C -0.039 4.039 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.129 4.129 21 O -0.167 6.167 22 H 0.260 0.740 23 H 0.327 0.673 24 H 0.316 0.684 25 H 0.152 0.848 26 H 0.132 0.868 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -13.492 -4.166 16.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.163 4.163 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.062 0.938 9 C 0.190 3.810 10 H 0.065 0.935 11 N -0.340 5.340 12 C -0.052 4.052 13 C -0.255 4.255 14 C -0.161 4.161 15 Cl -0.001 7.001 16 C -0.055 4.055 17 C -0.057 4.057 18 C -0.176 4.176 19 C -0.161 4.161 20 C -0.167 4.167 21 O -0.063 6.063 22 H 0.070 0.930 23 H 0.139 0.861 24 H 0.127 0.873 25 H 0.170 0.830 26 H 0.150 0.850 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.786 -12.690 -4.110 15.973 hybrid contribution 0.700 0.085 0.536 0.886 sum 9.486 -12.605 -3.574 16.175 Atomic orbital electron populations 1.70195 1.06907 1.26896 1.46930 1.25608 0.95491 1.01705 0.93459 0.85629 0.78817 0.79938 0.77885 1.19855 1.20331 1.20152 1.21040 0.92059 0.90747 1.55322 0.93835 1.17729 0.85443 0.86218 0.91581 0.93467 1.58906 1.27954 1.43047 1.04051 1.24766 0.97916 0.98416 0.84073 1.21476 1.03961 0.99360 1.00675 1.20899 1.04148 0.98794 0.92210 1.98278 1.78058 1.53306 1.70488 1.22516 0.97766 0.91808 0.93435 1.21502 0.95183 0.96361 0.92685 1.23008 1.01061 0.97858 0.95665 1.22835 0.97942 0.97564 0.97747 1.22956 0.98048 1.01311 0.94351 1.84020 1.46126 1.39900 1.36276 0.93041 0.86092 0.87253 0.83035 0.85006 0.91552 0.89756 0.87526 0.90358 0.89181 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.10 12.76 21.45 0.27 -49.83 16 2 C 0.04 2.32 5.39 84.66 0.46 2.78 16 3 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.55 -30.67 8.71 25.60 0.22 -30.44 16 8 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 9 C 0.30 15.10 3.07 43.42 0.13 15.24 16 10 H 0.05 2.57 8.13 -2.38 -0.02 2.55 16 11 N -0.81 -38.37 8.51 -174.95 -1.49 -39.86 16 12 C 0.00 0.06 6.07 24.83 0.15 0.21 16 13 C -0.23 -9.51 10.80 22.21 0.24 -9.27 16 14 C -0.13 -4.69 6.72 22.22 0.15 -4.54 16 15 Cl -0.03 -0.85 28.72 -2.72 -0.08 -0.93 16 16 C 0.00 -0.14 6.33 24.85 0.16 0.02 16 17 C -0.04 -0.98 4.09 -11.02 -0.05 -1.03 16 18 C -0.14 -3.19 7.64 31.18 0.24 -2.95 16 19 C -0.12 -2.12 8.09 31.18 0.25 -1.87 16 20 C -0.13 -2.72 7.63 31.12 0.24 -2.48 16 21 O -0.17 -6.80 10.27 -3.12 -0.03 -6.83 16 22 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 23 H 0.33 15.04 8.88 -89.69 -0.80 14.25 16 24 H 0.32 13.21 9.06 -89.69 -0.81 12.40 16 25 H 0.15 5.86 8.06 -2.91 -0.02 5.84 16 26 H 0.13 2.83 7.68 -2.38 -0.02 2.81 16 27 H 0.07 1.86 7.87 -2.38 -0.02 1.84 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -60.65 292.07 2.43 -58.21 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.46 Total: 28.03 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 2.19 Total: -34.34 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.22 Total: -89.68 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.03 Total: -6.83 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -60.65 2.43 -58.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193201.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.871 kcal (2) G-P(sol) polarization free energy of solvation -60.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds