Wall clock time and date at job start Mon Mar 30 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99483 * 2 1 4 4 H 1.48505 * 109.47197 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46668 * 120.00187 * 3 2 1 6 6 H 1.48501 * 109.47187 * 239.99900 * 3 2 1 7 7 C 1.37877 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99745 * 173.35547 * 7 2 1 9 9 C 1.50697 * 120.00087 * 353.35209 * 7 2 1 10 10 C 1.52995 * 109.67287 * 61.91791 * 9 7 2 11 11 N 1.46896 * 109.47125 * 54.19459 * 10 9 7 12 12 C 1.53340 * 109.67160 * 301.41799 * 9 7 2 13 13 C 1.53117 * 109.53953 * 290.31578 * 12 9 7 14 14 C 1.53402 * 109.41920 * 290.02606 * 13 12 9 15 15 C 1.50632 * 108.38470 * 49.56909 * 14 13 12 16 16 C 1.40678 * 128.26486 * 163.56158 * 15 14 13 17 17 C 1.34911 * 106.62680 * 180.08748 * 16 15 14 18 18 Cl 1.73599 * 125.76780 * 180.02562 * 17 16 15 19 19 O 1.34518 * 108.46419 * 359.97438 * 17 16 15 20 20 C 1.33842 * 109.44142 * 359.94836 * 19 17 16 21 21 H 0.97000 * 120.00886 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47294 * 174.20076 * 10 9 7 23 23 H 1.09003 * 109.47029 * 294.20061 * 10 9 7 24 24 H 1.00905 * 110.99828 * 56.05003 * 11 10 9 25 25 H 1.00905 * 111.00081 * 179.97438 * 11 10 9 26 26 H 1.09005 * 109.45589 * 50.33737 * 12 9 7 27 27 H 1.08996 * 109.45608 * 170.29231 * 12 9 7 28 28 H 1.09008 * 109.48046 * 50.00918 * 13 12 9 29 29 H 1.09002 * 109.48100 * 170.03571 * 13 12 9 30 30 H 1.08992 * 109.68303 * 169.29898 * 14 13 12 31 31 H 1.09006 * 109.67710 * 289.81138 * 14 13 12 32 32 H 1.07994 * 126.68664 * 0.06256 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1027 1.6964 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0791 -1.1970 -0.1088 9 6 1.2587 -2.4948 0.1500 10 6 0.2911 -2.6722 -1.0217 11 7 1.0263 -2.5473 -2.2873 12 6 0.4772 -2.4920 1.4692 13 6 1.4556 -2.5703 2.6443 14 6 2.0965 -3.9635 2.6825 15 6 2.6060 -4.2900 1.3031 16 6 3.5237 -5.2877 0.9269 17 6 3.6688 -5.1940 -0.4111 18 17 4.6912 -6.1956 -1.3935 19 8 2.8865 -4.1939 -0.8555 20 6 2.2384 -3.6426 0.1776 21 1 -0.4851 0.8400 0.0004 22 1 -0.1707 -3.6580 -0.9655 23 1 -0.4822 -1.9055 -0.9736 24 1 1.7902 -3.2054 -2.3281 25 1 0.4087 -2.6612 -3.0771 26 1 -0.1068 -1.5746 1.5433 27 1 -0.1924 -3.3517 1.4963 28 1 2.2328 -1.8159 2.5211 29 1 0.9195 -2.3910 3.5763 30 1 2.9252 -3.9671 3.3904 31 1 1.3530 -4.7014 2.9840 32 1 4.0164 -5.9912 1.5816 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:41 Heat of formation + Delta-G solvation = -9.668814 kcal Electronic energy + Delta-G solvation = -17671.404694 eV Core-core repulsion = 14851.550859 eV Total energy + Delta-G solvation = -2819.853835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.65522 -38.81511 -37.84230 -35.93723 -33.89831 -33.01699 -30.79053 -29.42007 -26.96283 -25.51487 -22.96226 -22.80136 -21.89224 -19.92281 -18.40819 -17.62293 -17.10850 -16.79099 -16.37393 -15.71797 -15.25801 -14.97362 -14.52004 -14.06260 -13.93910 -13.78752 -13.46292 -13.11441 -13.05244 -12.74354 -12.67546 -12.48407 -12.26438 -11.99693 -11.82284 -11.31280 -11.08429 -10.91883 -10.43839 -10.29631 -9.16214 -8.97246 -7.94884 -6.03867 0.30935 0.74016 1.46267 1.48233 1.53438 1.67684 2.51463 2.60254 3.31604 3.98720 4.02118 4.12397 4.27395 4.42791 4.56097 4.66297 4.78160 4.86107 4.92799 5.02739 5.08490 5.15439 5.36406 5.42383 5.56427 5.63916 5.72129 5.84239 6.09899 6.27925 6.32506 6.71040 6.84443 6.96716 7.58363 9.05069 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.008319 C = 0.007524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.934086 B = 3365.145902 C = 3720.616659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.043 3.957 3 Si 0.937 3.063 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.479 4.479 8 H 0.029 0.971 9 C 0.145 3.855 10 C 0.083 3.917 11 N -0.833 5.833 12 C -0.098 4.098 13 C -0.110 4.110 14 C -0.037 4.037 15 C -0.213 4.213 16 C -0.154 4.154 17 C -0.027 4.027 18 Cl 0.026 6.974 19 O -0.181 6.181 20 C 0.038 3.962 21 H 0.260 0.740 22 H -0.017 1.017 23 H 0.088 0.912 24 H 0.328 0.672 25 H 0.329 0.671 26 H 0.080 0.920 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -9.868 2.982 10.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.157 4.157 3 Si 0.765 3.235 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.213 1.213 7 C -0.517 4.517 8 H 0.047 0.953 9 C 0.144 3.856 10 C -0.048 4.048 11 N -0.363 5.363 12 C -0.136 4.136 13 C -0.147 4.147 14 C -0.074 4.074 15 C -0.215 4.215 16 C -0.174 4.174 17 C -0.102 4.102 18 Cl 0.054 6.946 19 O -0.079 6.079 20 C -0.013 4.013 21 H 0.069 0.931 22 H 0.001 0.999 23 H 0.106 0.894 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.671 -8.996 2.842 10.123 hybrid contribution 0.365 -0.142 -0.723 0.822 sum 4.037 -9.137 2.119 10.212 Atomic orbital electron populations 1.69831 1.06176 1.26702 1.51055 1.25151 0.95387 1.00453 0.94667 0.85952 0.78680 0.80841 0.78029 1.20872 1.20076 1.21337 1.20522 0.91817 0.90028 1.49348 0.95267 1.17298 0.88256 0.86706 0.93359 1.21803 0.97035 0.95912 0.90073 1.58573 1.14118 1.60024 1.03596 1.21495 0.97304 1.01197 0.93632 1.21513 0.98726 0.96504 0.97978 1.20060 0.99979 0.96865 0.90452 1.20488 1.03532 0.99892 0.97544 1.21397 1.01834 1.02043 0.92156 1.22721 1.01137 0.95369 0.90974 1.98366 1.62192 1.62256 1.71743 1.83739 1.46813 1.39453 1.37904 1.23689 0.96807 0.96745 0.84072 0.93070 0.99931 0.89439 0.85853 0.85908 0.90158 0.94510 0.93159 0.90745 0.89648 0.89964 0.80103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.32 9.53 21.45 0.20 -47.11 16 2 C 0.04 2.25 5.07 84.65 0.43 2.68 16 3 Si 0.94 43.29 29.54 68.60 2.03 45.32 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 7 C -0.48 -25.23 6.56 25.60 0.17 -25.06 16 8 H 0.03 1.64 7.76 -2.91 -0.02 1.62 16 9 C 0.14 6.79 0.34 -53.49 -0.02 6.77 16 10 C 0.08 3.87 5.45 86.30 0.47 4.34 16 11 N -0.83 -37.06 9.04 -186.73 -1.69 -38.74 16 12 C -0.10 -4.22 4.52 30.75 0.14 -4.08 16 13 C -0.11 -4.06 5.88 30.77 0.18 -3.88 16 14 C -0.04 -1.16 6.29 29.96 0.19 -0.98 16 15 C -0.21 -7.97 5.95 -20.05 -0.12 -8.09 16 16 C -0.15 -5.03 10.87 22.10 0.24 -4.78 16 17 C -0.03 -0.95 7.94 67.05 0.53 -0.42 16 18 Cl 0.03 0.72 29.30 -2.72 -0.08 0.64 16 19 O -0.18 -7.62 8.36 -0.22 0.00 -7.62 16 20 C 0.04 1.65 5.65 25.00 0.14 1.79 16 21 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 22 H -0.02 -0.77 8.14 -2.39 -0.02 -0.79 16 23 H 0.09 4.48 6.19 -2.39 -0.01 4.47 16 24 H 0.33 14.31 6.40 -89.69 -0.57 13.74 16 25 H 0.33 12.73 9.08 -89.69 -0.81 11.92 16 26 H 0.08 3.85 6.04 -2.38 -0.01 3.84 16 27 H 0.04 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.05 2.10 7.32 -2.38 -0.02 2.08 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -56.30 271.43 2.59 -53.72 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.23 Total: 25.52 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 2.35 Total: -31.71 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -1.48 Total: -85.86 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.00 Total: -7.62 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -56.30 2.59 -53.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.047 kcal (2) G-P(sol) polarization free energy of solvation -56.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds