Wall clock time and date at job start Mon Mar 30 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35925 * 116.99615 * 2 1 4 4 C 1.38706 * 120.06276 * 359.72210 * 3 2 1 5 5 C 1.38156 * 119.95558 * 179.74204 * 4 3 2 6 6 C 1.50697 * 119.96015 * 180.23640 * 5 4 3 7 7 H 1.08996 * 109.47255 * 160.30453 * 6 5 4 8 8 N 1.46896 * 109.47566 * 40.30049 * 6 5 4 9 9 C 1.50704 * 109.47228 * 280.29994 * 6 5 4 10 10 H 1.08006 * 119.99592 * 0.02562 * 9 6 5 11 11 C 1.37877 * 120.00269 * 180.02562 * 9 6 5 12 12 N 1.31510 * 119.99787 * 180.02562 * 11 9 6 13 13 Si 1.86793 * 119.99881 * 359.97438 * 11 9 6 14 14 H 1.48499 * 109.47118 * 90.00402 * 13 11 9 15 15 H 1.48498 * 109.47346 * 210.00003 * 13 11 9 16 16 H 1.48494 * 109.47306 * 330.00219 * 13 11 9 17 17 C 1.38279 * 120.07755 * 0.53874 * 5 4 3 18 18 C 1.38250 * 120.11919 * 359.71620 * 17 5 4 19 19 C 1.50696 * 119.97741 * 180.02562 * 18 17 5 20 20 C 1.38260 * 120.04075 * 0.02693 * 18 17 5 21 21 Cl 1.73595 * 120.03585 * 179.97438 * 20 18 17 22 22 H 1.08999 * 109.47144 * 300.00200 * 1 2 3 23 23 H 1.08998 * 109.47043 * 59.99798 * 1 2 3 24 24 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 25 25 H 1.07992 * 120.02083 * 359.97438 * 4 3 2 26 26 H 1.00907 * 110.99736 * 300.00319 * 8 6 5 27 27 H 1.00903 * 110.99859 * 63.94962 * 8 6 5 28 28 H 0.97003 * 119.99775 * 180.02562 * 12 11 9 29 29 H 1.08002 * 119.94044 * 179.70041 * 17 5 4 30 30 H 1.09004 * 109.47331 * 270.02100 * 19 18 17 31 31 H 1.09001 * 109.47420 * 30.02256 * 19 18 17 32 32 H 1.08998 * 109.47008 * 150.02479 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2918 2.3752 -0.0058 5 6 1.9212 3.6050 -0.0004 6 6 1.1018 4.8698 -0.0014 7 1 1.7147 5.7000 0.3495 8 7 -0.0549 4.7046 0.8889 9 6 0.6216 5.1563 -1.4008 10 1 0.8833 4.4889 -2.2087 11 6 -0.1517 6.2702 -1.6499 12 7 -0.5711 6.5198 -2.8711 13 14 -0.6048 7.4240 -0.2526 14 1 0.4326 8.4790 -0.1256 15 1 -1.9191 8.0540 -0.5372 16 1 -0.6882 6.6565 1.0159 17 6 3.3021 3.6768 -0.0005 18 6 4.0570 2.5186 0.0000 19 6 5.5617 2.6006 0.0005 20 6 3.4322 1.2852 0.0000 21 17 4.3802 -0.1690 -0.0001 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.2133 2.3202 -0.0108 26 1 -0.6392 3.9403 0.5846 27 1 0.2403 4.5755 1.8451 28 1 -1.1148 7.3038 -3.0464 29 1 3.7918 4.6394 -0.0011 30 1 5.9249 2.6205 -1.0270 31 1 5.8760 3.5089 0.5147 32 1 5.9727 1.7315 0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219762.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:36 Heat of formation + Delta-G solvation = -39.654247 kcal Electronic energy + Delta-G solvation = -16802.857981 eV Core-core repulsion = 13981.703880 eV Total energy + Delta-G solvation = -2821.154101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30986 -38.98293 -37.63602 -36.39448 -34.08981 -32.67130 -31.08918 -28.79243 -28.03070 -27.42006 -24.50129 -22.79901 -21.11536 -19.02419 -18.61505 -17.58657 -17.27703 -16.78020 -16.52513 -15.99890 -15.40126 -15.06988 -14.83456 -14.53288 -14.34063 -13.76830 -13.38672 -13.22760 -13.04488 -12.87937 -12.69994 -12.54796 -12.45693 -12.21026 -11.80561 -11.66781 -11.57016 -11.25858 -10.73542 -9.55198 -9.12017 -8.92178 -8.23185 -6.37528 0.19711 0.36693 1.21308 1.53492 1.61026 1.96520 2.24948 2.61251 2.63807 3.15633 3.75344 3.86146 4.08343 4.21600 4.28482 4.35043 4.38076 4.39409 4.64968 4.69864 4.77532 4.79017 4.95688 5.11385 5.19732 5.38327 5.50306 5.70974 5.71941 6.13480 6.27470 6.47642 6.77267 7.01602 7.40702 8.89980 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.027322 B = 0.006591 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.582280 B = 4247.436106 C = 4780.017191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.320 6.320 3 C 0.132 3.868 4 C -0.206 4.206 5 C -0.041 4.041 6 C 0.227 3.773 7 H 0.051 0.949 8 N -0.834 5.834 9 C -0.516 4.516 10 H 0.022 0.978 11 C 0.027 3.973 12 N -0.951 5.951 13 Si 0.930 3.070 14 H -0.300 1.300 15 H -0.317 1.317 16 H -0.153 1.153 17 C -0.157 4.157 18 C -0.040 4.040 19 C -0.113 4.113 20 C -0.100 4.100 21 Cl -0.059 7.059 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.128 0.872 25 H 0.138 0.862 26 H 0.335 0.665 27 H 0.332 0.668 28 H 0.262 0.738 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -11.321 10.520 16.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.234 6.234 3 C 0.086 3.914 4 C -0.225 4.225 5 C -0.044 4.044 6 C 0.117 3.883 7 H 0.069 0.931 8 N -0.364 5.364 9 C -0.554 4.554 10 H 0.040 0.960 11 C -0.172 4.172 12 N -0.591 5.591 13 Si 0.755 3.245 14 H -0.228 1.228 15 H -0.246 1.246 16 H -0.074 1.074 17 C -0.176 4.176 18 C -0.041 4.041 19 C -0.170 4.170 20 C -0.128 4.128 21 Cl -0.030 7.030 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.146 0.854 25 H 0.155 0.845 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.917 -10.838 10.217 16.422 hybrid contribution -0.304 -0.187 -0.319 0.479 sum 6.613 -11.025 9.898 16.225 Atomic orbital electron populations 1.23347 0.76479 1.05713 1.01988 1.86076 1.23275 1.25589 1.88426 1.18736 0.90743 0.85231 0.96690 1.21007 1.00550 0.91006 1.09929 1.21015 0.94979 0.96425 0.91945 1.18304 0.88017 0.90088 0.91895 0.93096 1.59744 1.21089 1.50377 1.05218 1.20892 1.33141 1.09208 0.92204 0.95971 1.25908 0.93993 0.99278 0.97976 1.70107 1.37189 1.28688 1.23080 0.86305 0.75040 0.76969 0.86178 1.22789 1.24553 1.07366 1.21021 0.93004 0.98327 1.05224 1.19859 0.98168 0.89773 0.96293 1.20912 0.87977 1.04388 1.03698 1.20077 0.88610 0.88482 1.15602 1.98298 1.71548 1.35877 1.97304 0.91518 0.93029 0.85397 0.84469 0.85127 0.85474 0.92917 0.84403 0.89930 0.89282 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.32 -9.60 9.96 -92.70 -0.92 -10.52 16 3 C 0.13 4.42 6.68 22.52 0.15 4.57 16 4 C -0.21 -7.23 8.27 22.36 0.19 -7.04 16 5 C -0.04 -1.56 4.88 -19.88 -0.10 -1.66 16 6 C 0.23 9.61 2.35 43.42 0.10 9.71 16 7 H 0.05 2.16 7.43 -2.39 -0.02 2.14 16 8 N -0.83 -30.31 5.66 -174.96 -0.99 -31.30 16 9 C -0.52 -28.31 9.28 25.60 0.24 -28.07 16 10 H 0.02 1.39 7.98 -2.91 -0.02 1.37 16 11 C 0.03 1.55 5.47 84.66 0.46 2.01 16 12 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 13 Si 0.93 43.21 26.94 68.60 1.85 45.06 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 15 H -0.32 -15.38 7.11 99.48 0.71 -14.67 16 16 H -0.15 -6.15 5.17 99.48 0.51 -5.64 16 17 C -0.16 -5.36 9.32 22.28 0.21 -5.15 16 18 C -0.04 -1.22 5.88 -19.86 -0.12 -1.34 16 19 C -0.11 -2.57 9.61 71.23 0.68 -1.88 16 20 C -0.10 -3.22 6.33 22.41 0.14 -3.07 16 21 Cl -0.06 -1.64 26.84 -2.72 -0.07 -1.71 16 22 H 0.07 1.33 7.67 -2.39 -0.02 1.31 16 23 H 0.05 1.24 7.65 -2.39 -0.02 1.22 16 24 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.14 4.55 4.91 -2.91 -0.01 4.54 16 26 H 0.33 11.79 7.34 -89.69 -0.66 11.13 16 27 H 0.33 9.96 9.06 -89.69 -0.81 9.15 16 28 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.14 4.34 8.03 -2.91 -0.02 4.32 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 32 H 0.08 1.66 6.90 -2.39 -0.02 1.64 16 Total: -1.00 -67.45 280.29 2.73 -64.73 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.50 Total: 23.41 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 3.07 Total: -30.39 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -0.69 Total: -90.57 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.92 Total: -10.52 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.85 Total: 45.06 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.71 kcal Total: -67.45 2.73 -64.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219762.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.072 kcal (2) G-P(sol) polarization free energy of solvation -67.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds