Wall clock time and date at job start Mon Mar 30 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38296 * 119.97470 * 2 1 4 4 C 1.38228 * 120.11831 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.96152 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47194 * 339.98197 * 5 4 3 7 7 N 1.46899 * 109.46897 * 219.97603 * 5 4 3 8 8 C 1.53001 * 109.47340 * 99.98090 * 5 4 3 9 9 C 1.50697 * 109.47310 * 184.99809 * 8 5 4 10 10 H 1.07996 * 119.99872 * 0.02562 * 9 8 5 11 11 C 1.37874 * 119.99747 * 179.97438 * 9 8 5 12 12 N 1.31511 * 120.00629 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99850 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46982 * 60.00239 * 13 11 9 15 15 H 1.48499 * 109.47024 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46984 * 300.00196 * 13 11 9 17 17 C 1.38201 * 120.07796 * 0.02562 * 4 3 2 18 18 C 1.38664 * 119.95516 * 359.97438 * 17 4 3 19 19 O 1.35931 * 120.05980 * 180.02562 * 18 17 4 20 20 C 1.38216 * 119.98125 * 179.97438 * 2 1 3 21 21 Cl 1.73594 * 120.03698 * 0.28216 * 20 2 1 22 22 H 1.09001 * 109.47316 * 269.99510 * 1 2 3 23 23 H 1.08995 * 109.47355 * 30.00432 * 1 2 3 24 24 H 1.09005 * 109.46692 * 149.99821 * 1 2 3 25 25 H 1.08000 * 119.94067 * 359.97438 * 3 2 1 26 26 H 1.00911 * 111.00015 * 176.04323 * 7 5 4 27 27 H 1.00899 * 111.00485 * 300.00052 * 7 5 4 28 28 H 1.09005 * 109.46637 * 304.99997 * 8 5 4 29 29 H 1.09003 * 109.47270 * 64.99750 * 8 5 4 30 30 H 0.96998 * 120.00424 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.02246 * 180.02562 * 17 4 3 32 32 H 0.96698 * 113.99171 * 269.97537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1980 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.3296 2.5089 0.0011 6 1 3.6727 3.3043 -0.3507 7 7 5.4942 2.4062 -0.8883 8 6 4.7996 2.8268 1.4220 9 6 5.4409 4.1903 1.4458 10 1 5.5063 4.7721 0.5383 11 6 5.9431 4.6954 2.6263 12 7 5.8630 3.9871 3.7315 13 14 6.7374 6.3859 2.6560 14 1 5.7486 7.4050 2.2216 15 1 7.1937 6.6943 4.0351 16 1 7.9020 6.4018 1.7346 17 6 4.2759 0.0073 0.0005 18 6 3.5863 -1.1957 0.0005 19 8 4.2683 -2.3715 0.0011 20 6 2.1977 -1.1972 0.0005 21 17 1.3303 -2.7009 -0.0062 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6566 2.1325 -0.0004 26 1 5.9770 3.2897 -0.9555 27 1 6.1190 1.6751 -0.5830 28 1 3.9449 2.8154 2.0984 29 1 5.5252 2.0784 1.7407 30 1 6.2167 4.3423 4.5619 31 1 5.3558 0.0110 0.0014 32 1 4.4656 -2.7120 -0.8822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260258719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:39 Heat of formation + Delta-G solvation = -44.909575 kcal Electronic energy + Delta-G solvation = -16404.466637 eV Core-core repulsion = 13583.084648 eV Total energy + Delta-G solvation = -2821.381989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.84790 -37.16198 -36.49809 -35.29589 -32.69943 -31.52554 -29.57528 -28.00811 -26.80974 -24.61146 -22.23418 -21.82396 -19.42407 -17.92112 -16.75116 -16.44522 -16.08650 -15.09649 -14.65685 -14.49632 -13.88490 -13.57560 -13.18631 -12.89816 -12.69583 -12.37670 -12.12962 -11.97707 -11.71230 -11.52437 -11.14986 -11.07456 -10.82791 -10.71840 -10.34625 -10.28654 -9.93065 -9.25637 -8.52960 -8.43505 -8.32912 -7.75811 -6.12319 -4.17975 1.33299 1.41974 2.28159 3.25248 3.30967 3.32218 3.71689 4.21343 4.35151 4.85596 5.03573 5.22262 5.28901 5.44982 5.62180 5.64733 5.68936 5.72437 5.87446 6.07014 6.32218 6.37689 6.46138 6.60149 6.88998 6.91437 7.38575 7.50705 7.68875 7.79917 7.94319 8.13030 8.24858 8.88347 9.47654 10.98178 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.004844 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.982495 B = 5778.790410 C = 5980.328591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.117 4.117 4 C -0.021 4.021 5 C 0.123 3.877 6 H 0.081 0.919 7 N -0.840 5.840 8 C 0.001 3.999 9 C -0.529 4.529 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.890 5.890 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.126 4.126 18 C 0.116 3.884 19 O -0.489 6.489 20 C -0.079 4.079 21 Cl -0.073 7.073 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.132 0.868 26 H 0.349 0.651 27 H 0.329 0.671 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.263 0.737 31 H 0.134 0.866 32 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -9.538 -9.011 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.022 4.022 5 C 0.012 3.988 6 H 0.099 0.901 7 N -0.369 5.369 8 C -0.038 4.038 9 C -0.567 4.567 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.145 4.145 18 C 0.071 3.929 19 O -0.298 6.298 20 C -0.106 4.106 21 Cl -0.044 7.044 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.162 0.838 27 H 0.141 0.859 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.014 -9.784 -8.781 15.396 hybrid contribution 1.053 0.942 0.664 1.561 sum -6.961 -8.842 -8.117 13.875 Atomic orbital electron populations 1.20835 0.90408 1.03119 1.02867 1.19585 0.96466 0.90971 0.99475 1.20904 0.93645 0.97056 1.01951 1.20159 0.93364 0.95647 0.93035 1.20604 0.91947 0.91142 0.95135 0.90110 1.59283 1.12275 1.11704 1.53592 1.19804 0.96855 0.96948 0.90160 1.21082 1.38991 1.01803 0.94826 0.92479 1.25016 0.95898 0.97573 0.95627 1.69957 1.45699 1.37583 0.99547 0.86631 0.79760 0.84337 0.77127 1.20155 1.21262 1.20154 1.21132 1.00770 0.90430 1.02176 1.18117 0.87712 0.85951 1.01117 1.84858 1.75872 1.35909 1.33169 1.21090 0.91358 0.86958 1.11167 1.98315 1.76536 1.32438 1.97115 0.90716 0.91050 0.91132 0.84980 0.83776 0.85921 0.96081 0.96314 0.92742 0.84788 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.62 36.01 0.35 -0.97 16 2 C -0.06 -0.93 5.88 -104.61 -0.62 -1.55 16 3 C -0.12 -1.86 9.32 -39.56 -0.37 -2.23 16 4 C -0.02 -0.37 4.95 -104.64 -0.52 -0.89 16 5 C 0.12 2.40 2.99 -68.87 -0.21 2.19 16 6 H 0.08 1.58 8.00 -51.93 -0.42 1.17 16 7 N -0.84 -14.92 9.02 -5.66 -0.05 -14.97 16 8 C 0.00 0.02 4.60 -27.88 -0.13 -0.11 16 9 C -0.53 -13.94 8.55 -34.44 -0.29 -14.23 16 10 H 0.06 1.44 7.15 -52.49 -0.38 1.06 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 13 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.13 -2.11 9.23 -39.44 -0.36 -2.48 16 18 C 0.12 1.81 6.70 -39.20 -0.26 1.55 16 19 O -0.49 -6.72 12.97 -19.52 -0.25 -6.97 16 20 C -0.08 -1.18 6.33 -39.36 -0.25 -1.43 16 21 Cl -0.07 -0.96 26.84 -51.86 -1.39 -2.35 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 24 H 0.07 0.75 6.89 -51.93 -0.36 0.39 16 25 H 0.13 1.90 8.03 -52.49 -0.42 1.48 16 26 H 0.35 6.33 7.91 -39.29 -0.31 6.01 16 27 H 0.33 5.62 7.34 -39.29 -0.29 5.33 16 28 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.13 2.17 6.66 -52.49 -0.35 1.83 16 32 H 0.39 3.44 9.06 45.56 0.41 3.85 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -29.82 288.46 -7.32 -37.14 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -2.93 Total: 10.82 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.76 Total: -18.56 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.69 Total: -40.26 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.25 Total: -6.97 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.39 Total: -2.35 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.82 -7.32 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.767 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds