Wall clock time and date at job start Mon Mar 30 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38296 * 119.97470 * 2 1 4 4 C 1.38228 * 120.11831 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.96152 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47194 * 339.98197 * 5 4 3 7 7 N 1.46899 * 109.46897 * 219.97603 * 5 4 3 8 8 C 1.53001 * 109.47340 * 99.98090 * 5 4 3 9 9 C 1.50697 * 109.47310 * 184.99809 * 8 5 4 10 10 H 1.07996 * 119.99872 * 0.02562 * 9 8 5 11 11 C 1.37874 * 119.99747 * 179.97438 * 9 8 5 12 12 N 1.31511 * 120.00629 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 119.99850 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46982 * 60.00239 * 13 11 9 15 15 H 1.48499 * 109.47024 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46984 * 300.00196 * 13 11 9 17 17 C 1.38201 * 120.07796 * 0.02562 * 4 3 2 18 18 C 1.38664 * 119.95516 * 359.97438 * 17 4 3 19 19 O 1.35931 * 120.05980 * 180.02562 * 18 17 4 20 20 C 1.38216 * 119.98125 * 179.97438 * 2 1 3 21 21 Cl 1.73594 * 120.03698 * 0.28216 * 20 2 1 22 22 H 1.09001 * 109.47316 * 269.99510 * 1 2 3 23 23 H 1.08995 * 109.47355 * 30.00432 * 1 2 3 24 24 H 1.09005 * 109.46692 * 149.99821 * 1 2 3 25 25 H 1.08000 * 119.94067 * 359.97438 * 3 2 1 26 26 H 1.00911 * 111.00015 * 176.04323 * 7 5 4 27 27 H 1.00899 * 111.00485 * 300.00052 * 7 5 4 28 28 H 1.09005 * 109.46637 * 304.99997 * 8 5 4 29 29 H 1.09003 * 109.47270 * 64.99750 * 8 5 4 30 30 H 0.96998 * 120.00424 * 179.97438 * 12 11 9 31 31 H 1.07995 * 120.02246 * 180.02562 * 17 4 3 32 32 H 0.96698 * 113.99171 * 269.97537 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1980 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.3296 2.5089 0.0011 6 1 3.6727 3.3043 -0.3507 7 7 5.4942 2.4062 -0.8883 8 6 4.7996 2.8268 1.4220 9 6 5.4409 4.1903 1.4458 10 1 5.5063 4.7721 0.5383 11 6 5.9431 4.6954 2.6263 12 7 5.8630 3.9871 3.7315 13 14 6.7374 6.3859 2.6560 14 1 5.7486 7.4050 2.2216 15 1 7.1937 6.6943 4.0351 16 1 7.9020 6.4018 1.7346 17 6 4.2759 0.0073 0.0005 18 6 3.5863 -1.1957 0.0005 19 8 4.2683 -2.3715 0.0011 20 6 2.1977 -1.1972 0.0005 21 17 1.3303 -2.7009 -0.0062 22 1 -0.3634 -0.0001 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6566 2.1325 -0.0004 26 1 5.9770 3.2897 -0.9555 27 1 6.1190 1.6751 -0.5830 28 1 3.9449 2.8154 2.0984 29 1 5.5252 2.0784 1.7407 30 1 6.2167 4.3423 4.5619 31 1 5.3558 0.0110 0.0014 32 1 4.4656 -2.7120 -0.8822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260258719.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:38 Heat of formation + Delta-G solvation = -65.637888 kcal Electronic energy + Delta-G solvation = -16405.365484 eV Core-core repulsion = 13583.084648 eV Total energy + Delta-G solvation = -2822.280836 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06336 -38.42330 -37.64492 -36.70994 -34.61572 -32.79137 -30.83755 -29.87990 -27.89008 -26.35051 -23.74462 -23.17169 -20.84288 -19.20385 -18.49016 -17.70611 -17.45859 -16.62922 -16.35590 -15.81130 -15.25714 -14.75418 -14.51763 -14.38643 -14.15855 -13.96490 -13.52031 -13.15442 -13.06031 -12.91691 -12.74827 -12.44909 -12.32752 -12.20751 -11.94913 -11.74928 -11.49503 -11.16509 -10.61326 -9.67008 -9.61684 -9.26064 -8.22040 -6.34778 0.10251 0.21484 1.13477 1.41118 1.42787 1.50645 2.38229 2.50864 3.10329 3.11500 3.66872 3.78005 4.05001 4.25720 4.32032 4.47264 4.49512 4.65738 4.78491 4.85152 4.91392 5.09949 5.20641 5.30301 5.36801 5.41745 5.67866 5.72954 5.74293 6.13592 6.35226 6.68388 6.73387 6.81825 7.35778 8.88943 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.004844 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.982495 B = 5778.790410 C = 5980.328591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.125 4.125 4 C -0.042 4.042 5 C 0.138 3.862 6 H 0.081 0.919 7 N -0.827 5.827 8 C 0.010 3.990 9 C -0.537 4.537 10 H 0.069 0.931 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.964 3.036 14 H -0.267 1.267 15 H -0.289 1.289 16 H -0.264 1.264 17 C -0.141 4.141 18 C 0.118 3.882 19 O -0.495 6.495 20 C -0.086 4.086 21 Cl -0.054 7.054 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.144 0.856 26 H 0.347 0.653 27 H 0.333 0.667 28 H -0.012 1.012 29 H -0.010 1.010 30 H 0.262 0.738 31 H 0.131 0.869 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 -9.498 -10.191 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.144 4.144 4 C -0.043 4.043 5 C 0.026 3.974 6 H 0.099 0.901 7 N -0.356 5.356 8 C -0.028 4.028 9 C -0.574 4.574 10 H 0.087 0.913 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.160 4.160 18 C 0.072 3.928 19 O -0.308 6.308 20 C -0.114 4.114 21 Cl -0.025 7.025 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.162 0.838 26 H 0.160 0.840 27 H 0.146 0.854 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.702 -9.760 -10.004 16.464 hybrid contribution 1.230 0.796 1.012 1.781 sum -7.471 -8.964 -8.992 14.732 Atomic orbital electron populations 1.20921 0.88004 1.04510 1.03687 1.19912 0.98170 0.90237 0.97899 1.21085 0.93080 0.98289 1.01948 1.20051 0.94210 0.94871 0.95180 1.20303 0.92537 0.92529 0.92004 0.90105 1.59278 1.12026 1.11701 1.52571 1.19673 0.94734 0.95649 0.92782 1.21521 1.38199 1.02552 0.95176 0.91280 1.25950 0.96627 1.01654 0.95294 1.70108 1.47243 1.39687 1.00241 0.85511 0.79106 0.79431 0.77054 1.19178 1.21518 1.18904 1.21162 1.00792 0.90889 1.03124 1.18119 0.88145 0.86035 1.00476 1.84799 1.75698 1.35075 1.35186 1.21260 0.91435 0.88028 1.10635 1.98319 1.76021 1.31209 1.96996 0.90009 0.89308 0.90171 0.83834 0.83954 0.85437 0.99358 0.99156 0.92880 0.85081 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.62 71.24 0.69 -1.65 16 2 C -0.06 -1.69 5.88 -19.85 -0.12 -1.80 16 3 C -0.13 -3.89 9.32 22.28 0.21 -3.68 16 4 C -0.04 -1.50 4.95 -19.88 -0.10 -1.59 16 5 C 0.14 5.42 2.99 44.17 0.13 5.55 16 6 H 0.08 3.15 8.00 -2.39 -0.02 3.13 16 7 N -0.83 -29.20 9.02 -171.81 -1.55 -30.75 16 8 C 0.01 0.52 4.60 29.85 0.14 0.65 16 9 C -0.54 -28.49 8.55 25.60 0.22 -28.28 16 10 H 0.07 3.43 7.15 -2.91 -0.02 3.41 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 13 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 15 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 17 C -0.14 -4.72 9.23 22.36 0.21 -4.51 16 18 C 0.12 3.57 6.70 22.52 0.15 3.72 16 19 O -0.49 -12.95 12.97 -92.77 -1.20 -14.15 16 20 C -0.09 -2.46 6.33 22.41 0.14 -2.32 16 21 Cl -0.05 -1.32 26.84 -2.72 -0.07 -1.39 16 22 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 24 H 0.08 1.48 6.89 -2.38 -0.02 1.46 16 25 H 0.14 4.00 8.03 -2.91 -0.02 3.97 16 26 H 0.35 12.39 7.91 -89.68 -0.71 11.68 16 27 H 0.33 11.42 7.34 -89.69 -0.66 10.76 16 28 H -0.01 -0.68 8.14 -2.38 -0.02 -0.69 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.13 4.33 6.66 -2.91 -0.02 4.31 16 32 H 0.41 6.54 9.06 -74.06 -0.67 5.87 16 Total: -1.00 -63.81 288.46 0.75 -63.06 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.87 Total: 27.33 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 2.13 Total: -33.29 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.26 Total: -86.32 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.20 Total: -14.15 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.39 kcal Total: -63.81 0.75 -63.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258719.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.577 kcal (2) G-P(sol) polarization free energy of solvation -63.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds