Wall clock time and date at job start Mon Mar 30 2020 06:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38288 * 119.98051 * 2 1 4 4 C 1.38230 * 120.12286 * 180.27335 * 3 2 1 5 5 C 1.50692 * 119.96508 * 179.72525 * 4 3 2 6 6 H 1.09001 * 109.47320 * 20.02572 * 5 4 3 7 7 N 1.46903 * 109.47257 * 140.02024 * 5 4 3 8 8 C 1.53001 * 109.47097 * 260.02051 * 5 4 3 9 9 C 1.50701 * 109.46855 * 174.99869 * 8 5 4 10 10 H 1.08000 * 120.00237 * 0.02562 * 9 8 5 11 11 C 1.37879 * 119.99886 * 180.02562 * 9 8 5 12 12 N 1.31516 * 120.00187 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47172 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47220 * 119.99867 * 13 11 9 16 16 H 1.48506 * 109.46993 * 239.99966 * 13 11 9 17 17 C 1.38198 * 120.07379 * 359.74508 * 4 3 2 18 18 C 1.38670 * 119.95596 * 0.02562 * 17 4 3 19 19 O 1.35922 * 120.05938 * 179.97438 * 18 17 4 20 20 C 1.38211 * 119.97460 * 179.76421 * 2 1 3 21 21 Cl 1.73599 * 120.04374 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.47526 * 270.23303 * 1 2 3 23 23 H 1.09001 * 109.46906 * 30.23488 * 1 2 3 24 24 H 1.09002 * 109.47152 * 150.22792 * 1 2 3 25 25 H 1.08002 * 119.94121 * 359.97438 * 3 2 1 26 26 H 1.00908 * 110.99726 * 59.99963 * 7 5 4 27 27 H 1.00897 * 111.00164 * 183.95334 * 7 5 4 28 28 H 1.08991 * 109.47347 * 294.99869 * 8 5 4 29 29 H 1.08994 * 109.47024 * 55.00406 * 8 5 4 30 30 H 0.96996 * 120.00363 * 179.97438 * 12 11 9 31 31 H 1.07994 * 120.02437 * 179.97438 * 17 4 3 32 32 H 0.96698 * 114.00572 * 270.02292 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5804 1.2013 -0.0057 5 6 4.3297 2.5086 -0.0119 6 1 3.6742 3.3049 0.3408 7 7 5.4977 2.4079 0.8734 8 6 4.7944 2.8234 -1.4353 9 6 5.4356 4.1868 -1.4644 10 1 5.5052 4.7703 -0.5583 11 6 5.9335 4.6894 -2.6479 12 7 5.8483 3.9791 -3.7515 13 14 6.7290 6.3792 -2.6839 14 1 6.6997 6.9692 -1.3214 15 1 8.1368 6.2539 -3.1395 16 1 5.9822 7.2580 -3.6196 17 6 4.2759 0.0071 -0.0061 18 6 3.5861 -1.1959 -0.0013 19 8 4.2681 -2.3717 -0.0022 20 6 2.1976 -1.1972 0.0049 21 17 1.3301 -2.7009 0.0104 22 1 -0.3634 0.0042 1.0276 23 1 -0.3633 0.8879 -0.5175 24 1 -0.3633 -0.8920 -0.5103 25 1 1.6568 2.1324 -0.0004 26 1 6.1213 1.6760 0.5673 27 1 5.9807 3.2914 0.9368 28 1 5.5187 2.0743 -1.7550 29 1 3.9373 2.8106 -2.1085 30 1 6.1982 4.3327 -4.5841 31 1 5.3558 0.0107 -0.0110 32 1 4.4621 -2.7133 -0.8858 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260258722.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:40 Heat of formation + Delta-G solvation = -65.490702 kcal Electronic energy + Delta-G solvation = -16408.635639 eV Core-core repulsion = 13586.361186 eV Total energy + Delta-G solvation = -2822.274454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06121 -38.41704 -37.64196 -36.70907 -34.61329 -32.78999 -30.83822 -29.87501 -27.88934 -26.35072 -23.73835 -23.17241 -20.84382 -19.17470 -18.51687 -17.69074 -17.46266 -16.61283 -16.34426 -15.87998 -15.17476 -14.83593 -14.48467 -14.38440 -14.16975 -13.95338 -13.53167 -13.16270 -13.05312 -12.87173 -12.77646 -12.46756 -12.29141 -12.22802 -11.95795 -11.75292 -11.48236 -11.13637 -10.62589 -9.65910 -9.61255 -9.26164 -8.22581 -6.34284 0.10237 0.21562 1.13545 1.39438 1.41575 1.53211 2.37900 2.50199 3.11357 3.11964 3.67227 3.77611 4.04600 4.25567 4.32047 4.47080 4.49612 4.65983 4.79075 4.85439 4.90696 5.10140 5.20699 5.30322 5.37750 5.42363 5.68185 5.72574 5.74744 6.14465 6.36156 6.68638 6.70306 6.82260 7.36077 8.88753 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.034837 B = 0.004847 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.559897 B = 5774.882101 C = 5970.989042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.061 4.061 3 C -0.125 4.125 4 C -0.042 4.042 5 C 0.137 3.863 6 H 0.079 0.921 7 N -0.830 5.830 8 C 0.011 3.989 9 C -0.535 4.535 10 H 0.067 0.933 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.962 3.038 14 H -0.259 1.259 15 H -0.282 1.282 16 H -0.283 1.283 17 C -0.140 4.140 18 C 0.117 3.883 19 O -0.494 6.494 20 C -0.086 4.086 21 Cl -0.054 7.054 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.144 0.856 26 H 0.334 0.666 27 H 0.347 0.653 28 H -0.007 1.007 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.131 0.869 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 -9.561 6.700 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.144 4.144 4 C -0.043 4.043 5 C 0.026 3.974 6 H 0.097 0.903 7 N -0.359 5.359 8 C -0.027 4.027 9 C -0.573 4.573 10 H 0.085 0.915 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.787 3.213 14 H -0.182 1.182 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.159 4.159 18 C 0.072 3.928 19 O -0.307 6.307 20 C -0.113 4.113 21 Cl -0.026 7.026 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.161 0.839 26 H 0.146 0.854 27 H 0.161 0.839 28 H 0.012 0.988 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -8.720 -9.818 7.715 15.231 hybrid contribution 1.239 0.816 -1.938 2.440 sum -7.482 -9.003 5.777 13.054 Atomic orbital electron populations 1.20921 0.88002 1.04261 1.03937 1.19909 0.98172 0.90226 0.97903 1.21082 0.93080 0.98288 1.01937 1.20048 0.94200 0.94870 0.95181 1.20314 0.92427 0.92512 0.92183 0.90250 1.59268 1.11945 1.11622 1.53028 1.19666 0.94858 0.95634 0.92584 1.21583 1.38059 1.02596 0.95037 0.91470 1.25910 0.96628 1.01508 0.95357 1.70106 1.47432 1.39489 1.00147 0.85435 0.77808 0.79361 0.78654 1.18229 1.20800 1.20872 1.21160 1.00797 0.90881 1.03088 1.18115 0.88145 0.86060 1.00513 1.84762 1.75727 1.35070 1.35117 1.21257 0.91422 0.88028 1.10610 1.98319 1.76021 1.31217 1.96993 0.89290 0.89732 0.90456 0.83850 0.85404 0.83950 0.98848 0.99077 0.92876 0.85075 0.73357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 9.61 71.24 0.68 -1.64 16 2 C -0.06 -1.68 5.88 -19.86 -0.12 -1.80 16 3 C -0.13 -3.88 9.32 22.28 0.21 -3.67 16 4 C -0.04 -1.49 4.95 -19.88 -0.10 -1.59 16 5 C 0.14 5.39 2.99 44.17 0.13 5.52 16 6 H 0.08 3.11 8.00 -2.39 -0.02 3.09 16 7 N -0.83 -29.86 9.02 -171.80 -1.55 -31.41 16 8 C 0.01 0.55 4.60 29.85 0.14 0.69 16 9 C -0.53 -28.12 8.55 25.60 0.22 -27.91 16 10 H 0.07 3.34 7.14 -2.91 -0.02 3.32 16 11 C 0.00 0.23 5.46 84.65 0.46 0.69 16 12 N -0.93 -54.75 13.29 21.45 0.28 -54.47 16 13 Si 0.96 42.44 29.54 68.60 2.03 44.46 16 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 17 C -0.14 -4.69 9.23 22.36 0.21 -4.49 16 18 C 0.12 3.55 6.70 22.52 0.15 3.70 16 19 O -0.49 -12.92 12.96 -92.67 -1.20 -14.12 16 20 C -0.09 -2.45 6.33 22.41 0.14 -2.31 16 21 Cl -0.05 -1.32 26.84 -2.72 -0.07 -1.39 16 22 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 24 H 0.08 1.48 6.90 -2.39 -0.02 1.46 16 25 H 0.14 3.99 8.03 -2.91 -0.02 3.96 16 26 H 0.33 11.62 7.34 -89.69 -0.66 10.96 16 27 H 0.35 12.58 7.90 -89.70 -0.71 11.87 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.13 4.32 6.66 -2.91 -0.02 4.30 16 32 H 0.41 7.16 9.06 -74.06 -0.67 6.48 16 Total: -1.00 -62.36 288.46 0.75 -61.61 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.87 Total: 28.11 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 2.13 Total: -32.80 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -1.26 Total: -85.87 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -1.20 Total: -14.12 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.07 Total: -1.39 kcal Total: -62.36 0.75 -61.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260258722.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.878 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds