Wall clock time and date at job start Mon Mar 30 2020 06:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 117.00422 * 2 1 4 4 C 1.38745 * 120.04209 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.95675 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.97585 * 179.97438 * 5 4 3 7 7 C 1.38386 * 120.04250 * 359.95396 * 5 4 3 8 8 Cl 1.73595 * 119.95832 * 179.97438 * 7 5 4 9 9 C 1.38342 * 120.08717 * 0.02562 * 7 5 4 10 10 C 1.50701 * 119.98029 * 180.02562 * 9 7 5 11 11 H 1.08997 * 109.46958 * 39.97734 * 10 9 7 12 12 N 1.46904 * 109.47147 * 159.97223 * 10 9 7 13 13 C 1.50698 * 109.47242 * 279.97606 * 10 9 7 14 14 H 1.07997 * 119.99993 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00173 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00544 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99788 * 0.02562 * 15 13 10 18 18 H 1.48494 * 109.47502 * 89.99966 * 17 15 13 19 19 H 1.48505 * 109.47087 * 210.00064 * 17 15 13 20 20 H 1.48500 * 109.47471 * 329.99925 * 17 15 13 21 21 C 1.38165 * 120.04415 * 359.97438 * 9 7 5 22 22 H 1.08997 * 109.47253 * 300.00560 * 1 2 3 23 23 H 1.09011 * 109.46429 * 59.99900 * 1 2 3 24 24 H 1.08991 * 109.47682 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.01912 * 0.04236 * 4 3 2 26 26 H 1.09002 * 109.47126 * 269.97635 * 6 5 4 27 27 H 1.08996 * 109.47424 * 29.97924 * 6 5 4 28 28 H 1.09005 * 109.46936 * 149.98200 * 6 5 4 29 29 H 1.00902 * 110.99540 * 60.00090 * 12 10 9 30 30 H 1.00896 * 110.99701 * 183.95263 * 12 10 9 31 31 H 0.96998 * 120.00270 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.02562 * 179.73111 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9204 3.6049 -0.0011 6 6 1.1011 4.8697 -0.0022 7 6 3.3024 3.6762 -0.0001 8 17 4.0907 5.2229 -0.0015 9 6 4.0567 2.5165 0.0009 10 6 5.5616 2.5970 0.0025 11 1 5.8816 3.4028 0.6630 12 7 6.1195 1.3237 0.4776 13 6 6.0516 2.8694 -1.3963 14 1 5.3441 2.9734 -2.2056 15 6 7.4031 2.9858 -1.6429 16 7 7.8308 3.2241 -2.8635 17 14 8.6268 2.8052 -0.2431 18 1 9.0254 1.3805 -0.1148 19 1 9.8278 3.6317 -0.5258 20 1 8.0001 3.2598 1.0241 21 6 3.4312 1.2845 0.0014 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0275 0.0005 25 1 0.2128 2.3200 -0.0003 26 1 0.9043 5.1742 -1.0302 27 1 0.1562 4.6911 0.5110 28 1 1.6502 5.6588 0.5116 29 1 5.8369 0.5603 -0.1186 30 1 7.1247 1.3738 0.5491 31 1 8.7816 3.3056 -3.0370 32 1 4.0204 0.3794 -0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260261066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:00 Heat of formation + Delta-G solvation = -17.855191 kcal Electronic energy + Delta-G solvation = -16880.751812 eV Core-core repulsion = 14060.542989 eV Total energy + Delta-G solvation = -2820.208823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.92569 -37.75301 -35.56730 -35.09699 -32.31854 -31.29246 -29.46851 -27.74283 -26.29732 -25.94866 -22.98956 -21.39962 -19.55690 -17.41029 -17.00326 -16.38607 -15.92809 -15.57033 -15.04103 -14.23160 -13.94941 -13.63689 -13.43748 -12.87247 -12.56768 -12.37215 -12.24073 -11.93317 -11.66726 -11.64416 -11.37695 -10.94234 -10.81005 -10.64662 -10.34294 -10.04925 -9.88201 -9.47557 -8.75451 -8.25518 -7.69863 -7.45519 -6.19840 -4.22594 1.71333 1.78357 2.91713 3.14934 3.29801 3.30671 3.49093 4.10311 4.25883 4.95082 5.03202 5.14668 5.16364 5.18192 5.33552 5.47987 5.63619 5.78836 5.84634 5.92848 5.99650 6.11980 6.36457 6.50039 6.69967 6.73659 7.05593 7.22171 7.44162 7.66603 8.05179 8.26211 8.47573 8.87045 9.38598 10.92828 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.008099 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.052292 B = 3456.263222 C = 4249.862185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.126 3.874 4 C -0.220 4.220 5 C -0.046 4.046 6 C -0.114 4.114 7 C -0.067 4.067 8 Cl -0.064 7.064 9 C 0.025 3.975 10 C 0.205 3.795 11 H 0.063 0.937 12 N -0.850 5.850 13 C -0.534 4.534 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.888 5.888 17 Si 0.867 3.133 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.258 1.258 21 C -0.137 4.137 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.332 0.668 30 H 0.320 0.680 31 H 0.266 0.734 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 -1.503 6.466 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.239 4.239 5 C -0.047 4.047 6 C -0.171 4.171 7 C -0.094 4.094 8 Cl -0.035 7.035 9 C 0.024 3.976 10 C 0.096 3.904 11 H 0.081 0.919 12 N -0.384 5.384 13 C -0.573 4.573 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.526 5.526 17 Si 0.696 3.304 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.183 1.183 21 C -0.156 4.156 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.409 -1.376 7.019 15.197 hybrid contribution 1.081 0.146 -0.446 1.178 sum -12.328 -1.229 6.573 14.025 Atomic orbital electron populations 1.22979 0.79142 1.03386 1.01112 1.86072 1.20771 1.27205 1.89016 1.19022 0.92325 0.83735 0.96754 1.20762 0.99278 0.91212 1.12689 1.19370 0.91736 0.95195 0.98420 1.20814 0.98842 0.94806 1.02618 1.20443 0.91374 0.87112 1.10483 1.98320 1.80626 1.27629 1.96918 1.19727 0.97189 0.89922 0.90761 1.18555 0.86032 0.89598 0.96210 0.91934 1.59766 1.14028 1.07194 1.57429 1.21417 0.93002 1.50210 0.92704 0.90487 1.24952 0.98144 0.94256 0.95356 1.69879 1.15059 1.48096 1.19521 0.87095 0.81444 0.78271 0.83618 1.20133 1.21695 1.18258 1.20164 0.90401 0.98568 1.06468 0.92957 0.92884 0.88663 0.85608 0.90900 0.91794 0.90825 0.85485 0.86429 0.92412 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.85 10.50 -19.49 -0.20 -5.06 16 3 C 0.13 2.18 6.69 -39.22 -0.26 1.92 16 4 C -0.22 -3.44 8.69 -39.44 -0.34 -3.78 16 5 C -0.05 -0.77 5.88 -104.61 -0.62 -1.39 16 6 C -0.11 -1.50 9.61 36.00 0.35 -1.15 16 7 C -0.07 -1.33 6.30 -39.49 -0.25 -1.58 16 8 Cl -0.06 -1.26 25.64 -51.86 -1.33 -2.59 16 9 C 0.03 0.55 5.03 -104.61 -0.53 0.02 16 10 C 0.21 4.86 1.93 -70.01 -0.14 4.73 16 11 H 0.06 1.56 6.41 -51.93 -0.33 1.23 16 12 N -0.85 -18.71 8.63 -6.65 -0.06 -18.76 16 13 C -0.53 -14.59 9.06 -34.44 -0.31 -14.90 16 14 H 0.08 2.34 7.98 -52.49 -0.42 1.92 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 17 Si 0.87 20.90 24.61 -169.99 -4.18 16.72 16 18 H -0.27 -6.33 7.01 56.52 0.40 -5.94 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 21 C -0.14 -2.69 9.19 -39.44 -0.36 -3.05 16 22 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 23 H 0.05 0.50 7.66 -51.92 -0.40 0.10 16 24 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.13 1.55 6.30 -52.48 -0.33 1.22 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.07 0.97 6.90 -51.93 -0.36 0.61 16 29 H 0.33 6.92 7.28 -39.29 -0.29 6.64 16 30 H 0.32 7.15 4.30 -39.29 -0.17 6.98 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.14 2.64 6.25 -52.49 -0.33 2.32 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -30.30 275.06 -5.88 -36.18 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.46 Total: 10.97 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.56 Total: -15.85 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.72 Total: -44.52 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.20 Total: -5.06 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.18 Total: 16.72 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.33 Total: -2.59 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.30 -5.88 -36.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260261066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.325 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds