Wall clock time and date at job start Mon Mar 30 2020 06:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35922 * 117.00422 * 2 1 4 4 C 1.38745 * 120.04209 * 359.97438 * 3 2 1 5 5 C 1.38120 * 119.95675 * 180.02562 * 4 3 2 6 6 C 1.50695 * 119.97585 * 179.97438 * 5 4 3 7 7 C 1.38386 * 120.04250 * 359.95396 * 5 4 3 8 8 Cl 1.73595 * 119.95832 * 179.97438 * 7 5 4 9 9 C 1.38342 * 120.08717 * 0.02562 * 7 5 4 10 10 C 1.50701 * 119.98029 * 180.02562 * 9 7 5 11 11 H 1.08997 * 109.46958 * 39.97734 * 10 9 7 12 12 N 1.46904 * 109.47147 * 159.97223 * 10 9 7 13 13 C 1.50698 * 109.47242 * 279.97606 * 10 9 7 14 14 H 1.07997 * 119.99993 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00173 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00544 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99788 * 0.02562 * 15 13 10 18 18 H 1.48494 * 109.47502 * 89.99966 * 17 15 13 19 19 H 1.48505 * 109.47087 * 210.00064 * 17 15 13 20 20 H 1.48500 * 109.47471 * 329.99925 * 17 15 13 21 21 C 1.38165 * 120.04415 * 359.97438 * 9 7 5 22 22 H 1.08997 * 109.47253 * 300.00560 * 1 2 3 23 23 H 1.09011 * 109.46429 * 59.99900 * 1 2 3 24 24 H 1.08991 * 109.47682 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.01912 * 0.04236 * 4 3 2 26 26 H 1.09002 * 109.47126 * 269.97635 * 6 5 4 27 27 H 1.08996 * 109.47424 * 29.97924 * 6 5 4 28 28 H 1.09005 * 109.46936 * 149.98200 * 6 5 4 29 29 H 1.00902 * 110.99540 * 60.00090 * 12 10 9 30 30 H 1.00896 * 110.99701 * 183.95263 * 12 10 9 31 31 H 0.96998 * 120.00270 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.02562 * 179.73111 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9204 3.6049 -0.0011 6 6 1.1011 4.8697 -0.0022 7 6 3.3024 3.6762 -0.0001 8 17 4.0907 5.2229 -0.0015 9 6 4.0567 2.5165 0.0009 10 6 5.5616 2.5970 0.0025 11 1 5.8816 3.4028 0.6630 12 7 6.1195 1.3237 0.4776 13 6 6.0516 2.8694 -1.3963 14 1 5.3441 2.9734 -2.2056 15 6 7.4031 2.9858 -1.6429 16 7 7.8308 3.2241 -2.8635 17 14 8.6268 2.8052 -0.2431 18 1 9.0254 1.3805 -0.1148 19 1 9.8278 3.6317 -0.5258 20 1 8.0001 3.2598 1.0241 21 6 3.4312 1.2845 0.0014 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0275 0.0005 25 1 0.2128 2.3200 -0.0003 26 1 0.9043 5.1742 -1.0302 27 1 0.1562 4.6911 0.5110 28 1 1.6502 5.6588 0.5116 29 1 5.8369 0.5603 -0.1186 30 1 7.1247 1.3738 0.5491 31 1 8.7816 3.3056 -3.0370 32 1 4.0204 0.3794 -0.0022 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260261066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:59 Heat of formation + Delta-G solvation = -39.299696 kcal Electronic energy + Delta-G solvation = -16881.681716 eV Core-core repulsion = 14060.542989 eV Total energy + Delta-G solvation = -2821.138726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.22465 -39.07539 -37.14988 -36.69356 -34.20578 -32.85341 -30.90539 -28.74246 -28.10377 -27.24036 -24.72702 -22.70496 -21.11547 -19.20424 -18.60488 -17.80173 -17.32161 -16.79156 -16.59395 -16.03264 -15.32152 -15.04943 -14.83544 -14.41063 -14.24989 -13.75664 -13.62994 -13.18273 -13.01656 -12.94535 -12.78873 -12.65405 -12.49955 -12.08925 -12.02077 -11.70928 -11.34884 -11.21567 -10.89095 -9.75740 -9.39084 -8.94083 -8.37057 -6.43618 0.33448 0.36851 1.22422 1.31874 1.40117 1.44900 2.21870 2.39758 2.69145 2.95704 3.71301 3.77434 3.98018 4.24469 4.39389 4.43046 4.46472 4.55281 4.68090 4.73746 4.80412 4.82667 4.91842 5.18684 5.27559 5.37993 5.39956 5.60468 5.66816 6.04611 6.35848 6.47381 6.55786 6.67787 7.20948 8.79288 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022813 B = 0.008099 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.052292 B = 3456.263222 C = 4249.862185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.132 3.868 4 C -0.208 4.208 5 C -0.043 4.043 6 C -0.113 4.113 7 C -0.092 4.092 8 Cl -0.075 7.075 9 C -0.006 4.006 10 C 0.215 3.785 11 H 0.050 0.950 12 N -0.839 5.839 13 C -0.527 4.527 14 H 0.032 0.968 15 C 0.023 3.977 16 N -0.936 5.936 17 Si 0.928 3.072 18 H -0.253 1.253 19 H -0.291 1.291 20 H -0.250 1.250 21 C -0.158 4.158 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.168 0.832 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.339 0.661 30 H 0.318 0.682 31 H 0.268 0.732 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.506 -2.192 7.944 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.086 3.914 4 C -0.226 4.226 5 C -0.044 4.044 6 C -0.169 4.169 7 C -0.120 4.120 8 Cl -0.046 7.046 9 C -0.008 4.008 10 C 0.105 3.895 11 H 0.067 0.933 12 N -0.373 5.373 13 C -0.567 4.567 14 H 0.050 0.950 15 C -0.176 4.176 16 N -0.575 5.575 17 Si 0.753 3.247 18 H -0.178 1.178 19 H -0.218 1.218 20 H -0.174 1.174 21 C -0.177 4.177 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.139 0.861 25 H 0.186 0.814 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.636 -2.088 8.509 17.923 hybrid contribution 1.552 0.297 -0.956 1.846 sum -14.084 -1.791 7.553 16.082 Atomic orbital electron populations 1.23403 0.76196 1.05726 1.02501 1.86065 1.23754 1.26204 1.88507 1.19033 0.91706 0.85181 0.95475 1.21193 1.01216 0.89896 1.10322 1.19826 0.90714 0.97339 0.96525 1.20906 0.99632 0.92804 1.03595 1.20700 0.92816 0.86249 1.12195 1.98303 1.81116 1.28143 1.97079 1.19605 0.95943 0.91526 0.93700 1.18278 0.88174 0.89694 0.93380 0.93266 1.59713 1.13773 1.06655 1.57142 1.21525 0.92282 1.49290 0.93582 0.94997 1.25746 1.00142 0.94029 0.97723 1.70025 1.15585 1.50078 1.21855 0.86108 0.78689 0.79374 0.80537 1.17829 1.21842 1.17382 1.20169 0.92055 0.97670 1.07770 0.91197 0.91662 0.86138 0.81439 0.90025 0.88385 0.91217 0.84771 0.86606 0.92308 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -9.27 10.50 -92.67 -0.97 -10.24 16 3 C 0.13 4.28 6.69 22.50 0.15 4.43 16 4 C -0.21 -5.79 8.69 22.36 0.19 -5.59 16 5 C -0.04 -1.35 5.88 -19.86 -0.12 -1.47 16 6 C -0.11 -2.62 9.61 71.23 0.68 -1.94 16 7 C -0.09 -3.67 6.30 22.33 0.14 -3.53 16 8 Cl -0.08 -3.01 25.64 -2.72 -0.07 -3.08 16 9 C -0.01 -0.28 5.03 -19.86 -0.10 -0.38 16 10 C 0.21 10.34 1.93 43.42 0.08 10.43 16 11 H 0.05 2.49 6.41 -2.39 -0.02 2.48 16 12 N -0.84 -36.75 8.63 -174.95 -1.51 -38.25 16 13 C -0.53 -29.83 9.06 25.60 0.23 -29.60 16 14 H 0.03 2.05 7.98 -2.91 -0.02 2.02 16 15 C 0.02 1.31 5.47 84.65 0.46 1.77 16 16 N -0.94 -57.71 13.96 21.45 0.30 -57.42 16 17 Si 0.93 43.47 24.61 68.60 1.69 45.16 16 18 H -0.25 -10.93 7.01 99.48 0.70 -10.23 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 21 C -0.16 -6.15 9.19 22.36 0.21 -5.95 16 22 H 0.07 0.92 7.66 -2.39 -0.02 0.90 16 23 H 0.06 0.93 7.66 -2.38 -0.02 0.91 16 24 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.17 3.20 6.30 -2.91 -0.02 3.18 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 28 H 0.07 1.69 6.90 -2.38 -0.02 1.67 16 29 H 0.34 14.16 7.28 -89.69 -0.65 13.51 16 30 H 0.32 13.89 4.30 -89.70 -0.39 13.51 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.13 5.16 6.25 -2.91 -0.02 5.14 16 Total: -1.00 -67.92 275.06 2.55 -65.38 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.06 Total: 28.90 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 3.05 Total: -30.45 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -1.21 Total: -95.67 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.97 Total: -10.24 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.69 Total: 45.16 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -0.07 Total: -3.08 kcal Total: -67.92 2.55 -65.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260261066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.076 kcal (2) G-P(sol) polarization free energy of solvation -67.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds