Wall clock time and date at job start Mon Mar 30 2020 06:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35927 * 116.99854 * 2 1 4 4 C 1.38746 * 120.04230 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.95365 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.97515 * 180.02562 * 5 4 3 7 7 C 1.38383 * 120.04269 * 359.97224 * 5 4 3 8 8 Cl 1.73602 * 119.95530 * 180.02562 * 7 5 4 9 9 C 1.38341 * 120.08632 * 0.03259 * 7 5 4 10 10 C 1.50707 * 119.97916 * 179.97438 * 9 7 5 11 11 H 1.09005 * 109.46877 * 324.99412 * 10 9 7 12 12 N 1.46900 * 109.47130 * 204.99747 * 10 9 7 13 13 C 1.50696 * 109.47007 * 84.99135 * 10 9 7 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 10 9 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.38168 * 120.04504 * 0.26341 * 9 7 5 22 22 H 1.08993 * 109.46898 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46895 * 299.99929 * 1 2 3 24 24 H 1.09005 * 109.46929 * 59.99874 * 1 2 3 25 25 H 1.07998 * 120.01996 * 0.02562 * 4 3 2 26 26 H 1.09002 * 109.47105 * 269.97756 * 6 5 4 27 27 H 1.09006 * 109.47496 * 29.97450 * 6 5 4 28 28 H 1.09000 * 109.47192 * 149.97105 * 6 5 4 29 29 H 1.00899 * 110.99700 * 299.99445 * 12 10 9 30 30 H 1.00893 * 110.99909 * 63.95117 * 12 10 9 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.02158 * 179.70892 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9202 3.6050 0.0000 6 6 1.1009 4.8698 0.0012 7 6 3.3022 3.6764 -0.0005 8 17 4.0904 5.2232 -0.0005 9 6 4.0565 2.5167 -0.0011 10 6 5.5615 2.5972 -0.0022 11 1 5.8788 3.4573 -0.5920 12 7 6.1171 1.3700 -0.5880 13 6 6.0575 2.7478 1.4127 14 1 5.3535 2.7814 2.2311 15 6 7.4102 2.8427 1.6627 16 7 7.8431 2.9737 2.8976 17 14 8.6277 2.7853 0.2471 18 1 9.0257 1.3774 -0.0067 19 1 7.9954 3.3486 -0.9728 20 1 9.8299 3.5845 0.5957 21 6 3.4312 1.2847 -0.0068 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.2127 2.3199 0.0014 26 1 0.9024 5.1751 -1.0262 27 1 0.1567 4.6907 0.5157 28 1 1.6506 5.6584 0.5149 29 1 5.8370 0.5578 -0.0588 30 1 5.8513 1.2794 -1.5571 31 1 8.7947 3.0401 3.0734 32 1 4.0204 0.3796 -0.0120 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260261068.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:02 Heat of formation + Delta-G solvation = -44.628136 kcal Electronic energy + Delta-G solvation = -16873.514312 eV Core-core repulsion = 14052.144527 eV Total energy + Delta-G solvation = -2821.369785 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29642 -39.12985 -37.14907 -36.61011 -34.17863 -32.77222 -30.83155 -28.80087 -28.28711 -27.25792 -24.53034 -22.75117 -21.11125 -19.04857 -18.54541 -17.63761 -17.37988 -16.73248 -16.59866 -15.97008 -15.45211 -15.13915 -14.84230 -14.44039 -14.33595 -13.77351 -13.46152 -13.24993 -13.06027 -12.89800 -12.73171 -12.67011 -12.35298 -12.10223 -11.84491 -11.57980 -11.38860 -11.19658 -10.72634 -9.68259 -9.43258 -9.01195 -8.22203 -6.33763 0.26249 0.30251 1.41316 1.50787 1.57257 1.70749 2.33577 2.53597 2.62053 3.12286 3.71128 3.78709 4.04457 4.20608 4.27825 4.37968 4.42195 4.48322 4.65302 4.72446 4.77850 4.81963 4.86258 5.12894 5.22227 5.31074 5.40655 5.61409 5.65623 6.13658 6.39350 6.44771 6.76141 6.94563 7.41036 8.91178 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.022490 B = 0.008104 C = 0.006608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.688134 B = 3454.288125 C = 4236.509135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.135 3.865 4 C -0.208 4.208 5 C -0.041 4.041 6 C -0.115 4.115 7 C -0.090 4.090 8 Cl -0.074 7.074 9 C -0.043 4.043 10 C 0.224 3.776 11 H 0.052 0.948 12 N -0.843 5.843 13 C -0.497 4.497 14 H 0.027 0.973 15 C 0.031 3.969 16 N -0.946 5.946 17 Si 0.992 3.008 18 H -0.275 1.275 19 H -0.262 1.262 20 H -0.324 1.324 21 C -0.171 4.171 22 H 0.121 0.879 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.167 0.833 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.341 0.659 30 H 0.334 0.666 31 H 0.264 0.736 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.396 -1.695 -9.588 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.089 3.911 4 C -0.227 4.227 5 C -0.042 4.042 6 C -0.171 4.171 7 C -0.118 4.118 8 Cl -0.045 7.045 9 C -0.046 4.046 10 C 0.114 3.886 11 H 0.070 0.930 12 N -0.375 5.375 13 C -0.536 4.536 14 H 0.046 0.954 15 C -0.167 4.167 16 N -0.586 5.586 17 Si 0.822 3.178 18 H -0.201 1.201 19 H -0.186 1.186 20 H -0.254 1.254 21 C -0.190 4.190 22 H 0.139 0.861 23 H 0.083 0.917 24 H 0.089 0.911 25 H 0.185 0.815 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.147 0.853 31 H 0.073 0.927 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.408 -1.436 -9.330 18.930 hybrid contribution -0.069 -0.053 -0.078 0.117 sum -16.477 -1.489 -9.409 19.032 Atomic orbital electron populations 1.23409 0.76113 1.05774 1.02521 1.86070 1.23827 1.26207 1.88440 1.19016 0.91723 0.85168 0.95152 1.21205 1.01239 0.89951 1.10298 1.19884 0.90927 0.97290 0.96086 1.20924 0.99456 0.92768 1.03947 1.20734 0.92736 0.86481 1.11822 1.98309 1.81091 1.28066 1.97059 1.20725 0.98698 0.91504 0.93717 1.18429 0.84651 0.90717 0.94788 0.93013 1.59062 1.66215 1.05869 1.06373 1.20700 0.91889 1.50314 0.90661 0.95442 1.25736 1.00461 0.92698 0.97853 1.70076 1.15186 1.51615 1.21745 0.84968 0.75628 0.77655 0.79545 1.20050 1.18638 1.25379 1.20172 0.92323 0.97441 1.09081 0.86112 0.91713 0.91106 0.81523 0.89054 0.88835 0.91606 0.84336 0.85262 0.92737 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -8.85 10.50 -92.73 -0.97 -9.82 16 3 C 0.14 4.17 6.69 22.50 0.15 4.32 16 4 C -0.21 -5.54 8.69 22.36 0.19 -5.35 16 5 C -0.04 -1.23 5.88 -19.86 -0.12 -1.34 16 6 C -0.11 -2.54 9.61 71.24 0.68 -1.86 16 7 C -0.09 -3.43 6.31 22.33 0.14 -3.29 16 8 Cl -0.07 -2.85 25.72 -2.72 -0.07 -2.92 16 9 C -0.04 -1.79 4.99 -19.85 -0.10 -1.89 16 10 C 0.22 10.47 1.85 43.42 0.08 10.55 16 11 H 0.05 2.54 6.17 -2.38 -0.01 2.52 16 12 N -0.84 -34.82 6.36 -174.94 -1.11 -35.93 16 13 C -0.50 -28.55 9.29 25.60 0.24 -28.32 16 14 H 0.03 1.78 7.98 -2.91 -0.02 1.75 16 15 C 0.03 1.87 5.47 84.66 0.46 2.33 16 16 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 17 Si 0.99 50.10 26.03 68.60 1.79 51.88 16 18 H -0.27 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 20 H -0.32 -16.48 7.11 99.48 0.71 -15.78 16 21 C -0.17 -6.26 9.21 22.36 0.21 -6.06 16 22 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 0.88 7.66 -2.39 -0.02 0.87 16 24 H 0.07 0.86 7.66 -2.38 -0.02 0.84 16 25 H 0.17 3.04 6.30 -2.91 -0.02 3.02 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.55 8.08 -2.38 -0.02 1.54 16 28 H 0.07 1.62 6.90 -2.39 -0.02 1.60 16 29 H 0.34 13.60 7.20 -89.70 -0.65 12.95 16 30 H 0.33 11.59 9.06 -89.70 -0.81 10.78 16 31 H 0.26 15.91 8.31 -92.71 -0.77 15.13 16 32 H 0.13 4.69 6.28 -2.91 -0.02 4.67 16 Total: -1.00 -70.97 279.02 2.63 -68.34 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -0.35 Total: 18.09 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.05 Total: -29.54 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -0.81 Total: -96.02 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.97 Total: -9.82 kcal Atomic # 14 Polarization: 50.10 SS G_CDS: 1.79 Total: 51.88 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.07 Total: -2.92 kcal Total: -70.97 2.63 -68.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260261068.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.713 kcal (2) G-P(sol) polarization free energy of solvation -70.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds