Wall clock time and date at job start Mon Mar 30 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86804 * 119.99755 * 2 1 4 4 H 1.48505 * 109.46760 * 239.99765 * 3 2 1 5 5 H 1.48504 * 109.47009 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47230 * 119.99603 * 3 2 1 7 7 C 1.40192 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99593 * 180.02562 * 7 2 1 9 9 C 1.39922 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.39125 * 125.68724 * 179.97438 * 9 7 2 11 11 C 1.40936 * 107.49562 * 179.74580 * 10 9 7 12 12 C 1.41224 * 107.27000 * 0.37149 * 11 10 9 13 13 C 1.38893 * 119.37641 * 179.79209 * 12 11 10 14 14 C 1.38003 * 119.89296 * 359.74340 * 13 12 11 15 15 C 1.38899 * 120.69860 * 0.02562 * 14 13 12 16 16 C 1.36464 * 120.59255 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.09910 * 179.97438 * 16 15 14 18 18 F 1.39905 * 109.47157 * 0.02562 * 17 16 15 19 19 F 1.39900 * 109.47159 * 240.00352 * 17 16 15 20 20 F 1.39897 * 109.47274 * 120.00043 * 17 16 15 21 21 N 1.38042 * 107.82016 * 359.62686 * 12 11 10 22 22 H 0.96996 * 125.60582 * 180.22881 * 21 12 11 23 23 H 0.96998 * 120.00292 * 0.02562 * 1 2 3 24 24 H 1.07999 * 126.25432 * 0.02562 * 10 9 7 25 25 H 1.08001 * 120.05450 * 179.72433 * 13 12 11 26 26 H 1.08005 * 119.65298 * 180.02562 * 14 13 12 27 27 H 1.08008 * 119.70265 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6966 1.2125 7 6 2.0085 -1.2141 0.0005 8 1 3.0885 -1.2140 0.0010 9 6 1.3089 -2.4258 0.0005 10 6 1.8817 -3.6937 0.0005 11 6 0.8312 -4.6332 0.0065 12 6 -0.3804 -3.9075 0.0013 13 6 -1.5868 -4.5957 0.0012 14 6 -1.5914 -5.9758 0.0007 15 6 -0.3994 -6.6888 0.0009 16 6 0.7997 -6.0373 0.0011 17 6 2.0862 -6.8221 0.0019 18 9 1.7975 -8.1910 0.0018 19 9 2.8273 -6.5015 1.1443 20 9 2.8282 -6.5024 -1.1403 21 7 -0.0675 -2.5630 0.0010 22 1 -0.7076 -1.8343 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 2.9383 -3.9172 0.0009 25 1 -2.5198 -4.0518 0.0018 26 1 -2.5318 -6.5070 0.0002 27 1 -0.4218 -7.7687 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269749.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:24 Heat of formation + Delta-G solvation = -122.247368 kcal Electronic energy + Delta-G solvation = -18434.317748 eV Core-core repulsion = 14934.325155 eV Total energy + Delta-G solvation = -3499.992593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 255.057 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.37408 -46.94468 -46.78704 -39.90774 -36.20334 -33.66707 -31.52404 -29.02541 -28.48491 -25.99504 -24.41301 -21.12827 -20.90524 -19.50822 -18.14204 -17.69061 -17.45075 -17.20342 -15.73087 -15.09626 -14.75567 -14.04011 -13.79519 -13.78491 -13.33334 -13.15487 -13.11817 -13.02336 -12.96764 -12.44697 -12.14893 -11.62467 -11.59530 -11.51671 -11.18265 -10.76983 -10.74196 -10.40190 -10.04430 -9.68912 -8.85463 -7.37906 -7.37811 -6.83475 -4.74719 1.79951 2.57571 2.80004 2.83581 2.87294 3.53376 3.58795 3.69749 4.61341 4.62250 4.68781 4.93898 4.98800 5.35520 5.71918 5.89729 6.03527 6.40112 6.53140 6.62342 6.83433 6.92414 7.17781 7.27329 7.33346 7.50771 7.64213 7.80993 8.23307 8.30100 8.64781 9.23943 9.66227 Molecular weight = 255.06amu Principal moments of inertia in cm(-1) A = 0.030396 B = 0.006686 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.956528 B = 4187.074687 C = 4933.536163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.070 3.930 3 Si 0.940 3.060 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.430 4.430 8 H 0.104 0.896 9 C 0.302 3.698 10 C -0.375 4.375 11 C 0.004 3.996 12 C 0.043 3.957 13 C -0.090 4.090 14 C -0.187 4.187 15 C -0.083 4.083 16 C -0.219 4.219 17 C 0.515 3.485 18 F -0.194 7.194 19 F -0.184 7.184 20 F -0.184 7.184 21 N -0.590 5.590 22 H 0.426 0.574 23 H 0.296 0.704 24 H 0.119 0.881 25 H 0.107 0.893 26 H 0.112 0.888 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 -3.322 0.003 3.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.148 4.148 3 Si 0.763 3.237 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.462 4.462 8 H 0.122 0.878 9 C 0.190 3.810 10 C -0.397 4.397 11 C -0.002 4.002 12 C -0.063 4.063 13 C -0.111 4.111 14 C -0.206 4.206 15 C -0.102 4.102 16 C -0.222 4.222 17 C 0.461 3.539 18 F -0.175 7.175 19 F -0.166 7.166 20 F -0.166 7.166 21 N -0.206 5.206 22 H 0.275 0.725 23 H 0.108 0.892 24 H 0.137 0.863 25 H 0.125 0.875 26 H 0.130 0.870 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.118 -3.064 0.003 3.261 hybrid contribution 0.174 0.845 0.005 0.863 sum -0.945 -2.218 0.008 2.411 Atomic orbital electron populations 1.68716 1.08166 1.31153 1.37190 1.26233 0.94941 1.02831 0.90754 0.85800 0.79607 0.77770 0.80493 1.18343 1.19993 1.18340 1.19192 0.95799 0.88124 1.43119 0.87775 1.18125 0.80832 0.93700 0.88322 1.20541 0.96519 0.90095 1.32579 1.17624 0.94071 0.90357 0.98101 1.18340 0.94146 0.85232 1.08578 1.19971 0.94487 0.93874 1.02795 1.20191 0.96577 0.92740 1.11071 1.20066 0.91396 0.98711 1.00064 1.18787 0.90801 0.92629 1.19944 1.18395 0.85613 0.76500 0.73358 1.93068 1.93589 1.34471 1.96383 1.93157 1.79366 1.92557 1.51491 1.93156 1.79322 1.92582 1.51509 1.43139 1.07739 1.04571 1.65131 0.72520 0.89179 0.86297 0.87531 0.86957 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -18.36 10.61 55.56 0.59 -17.77 15 2 C 0.07 1.54 5.50 -17.28 -0.10 1.44 15 3 Si 0.94 16.62 29.56 -169.99 -5.03 11.59 15 4 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 5 H -0.28 -4.74 7.11 56.52 0.40 -4.33 15 6 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 7 C -0.43 -10.35 9.31 -38.22 -0.36 -10.71 15 8 H 0.10 2.36 7.85 -52.49 -0.41 1.95 15 9 C 0.30 7.69 6.67 -83.98 -0.56 7.13 15 10 C -0.38 -9.46 10.66 -38.23 -0.41 -9.87 15 11 C 0.00 0.09 5.87 -106.91 -0.63 -0.54 15 12 C 0.04 1.01 7.24 -83.69 -0.61 0.40 15 13 C -0.09 -1.81 10.07 -39.43 -0.40 -2.20 15 14 C -0.19 -3.46 10.02 -39.42 -0.40 -3.85 15 15 C -0.08 -1.61 9.37 -39.98 -0.37 -1.98 15 16 C -0.22 -4.80 5.38 -104.43 -0.56 -5.36 15 17 C 0.52 10.51 3.16 36.01 0.11 10.62 15 18 F -0.19 -3.56 15.95 2.25 0.04 -3.52 15 19 F -0.18 -3.84 17.24 2.25 0.04 -3.80 15 20 F -0.18 -3.84 17.25 2.25 0.04 -3.80 15 21 N -0.59 -14.34 5.84 -8.30 -0.05 -14.39 15 22 H 0.43 10.02 6.18 -40.82 -0.25 9.76 15 23 H 0.30 5.95 8.29 -40.82 -0.34 5.61 15 24 H 0.12 2.92 8.06 -52.49 -0.42 2.49 15 25 H 0.11 1.87 8.06 -52.49 -0.42 1.45 15 26 H 0.11 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.11 1.92 7.11 -52.48 -0.37 1.55 15 LS Contribution 254.62 15.07 3.84 3.84 Total: -1.00 -25.08 254.62 -6.24 -31.32 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -1.44 Total: 11.44 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -4.27 Total: -14.91 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.54 Total: -32.16 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 0.11 Total: -11.12 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -25.08 -6.24 -31.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269749.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.928 kcal (2) G-P(sol) polarization free energy of solvation -25.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds