Wall clock time and date at job start Mon Mar 30 2020 06:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38168 * 119.96638 * 2 1 4 4 C 1.38723 * 119.96946 * 180.02562 * 3 2 1 5 5 O 1.35899 * 120.04523 * 180.02562 * 4 3 2 6 6 C 1.38730 * 119.90136 * 359.97438 * 4 3 2 7 7 C 1.50700 * 120.02994 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47339 * 0.02562 * 7 6 4 9 9 C 1.50702 * 109.46839 * 240.00124 * 7 6 4 10 10 H 1.07996 * 120.00164 * 269.05740 * 9 7 6 11 11 C 1.37876 * 120.00300 * 89.05578 * 9 7 6 12 12 N 1.31517 * 119.99631 * 3.81025 * 11 9 7 13 13 Si 1.86795 * 120.00319 * 183.81044 * 11 9 7 14 14 H 1.48498 * 109.47184 * 269.99701 * 13 11 9 15 15 H 1.48496 * 109.47219 * 30.00541 * 13 11 9 16 16 H 1.48505 * 109.47053 * 150.00398 * 13 11 9 17 17 C 1.52993 * 109.46934 * 120.00436 * 7 6 4 18 18 N 1.46906 * 109.47005 * 185.71016 * 17 7 6 19 19 C 1.38233 * 119.93242 * 0.26083 * 6 4 3 20 20 Cl 1.73595 * 119.98649 * 179.74383 * 19 6 4 21 21 C 1.38222 * 119.96339 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47631 * 89.99605 * 1 2 3 23 23 H 1.09000 * 109.47275 * 210.00082 * 1 2 3 24 24 H 1.09005 * 109.47008 * 329.99368 * 1 2 3 25 25 H 1.07997 * 120.01462 * 359.97438 * 3 2 1 26 26 H 0.96706 * 113.99718 * 269.96989 * 5 4 3 27 27 H 0.97005 * 120.00462 * 354.38353 * 12 11 9 28 28 H 1.08999 * 109.47481 * 305.71043 * 17 7 6 29 29 H 1.09002 * 109.47442 * 65.71516 * 17 7 6 30 30 H 1.00900 * 110.99711 * 183.33514 * 18 17 7 31 31 H 1.00892 * 111.00237 * 307.29395 * 18 17 7 32 32 H 1.08005 * 119.95205 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1970 0.0000 4 6 3.5844 1.1971 -0.0005 5 8 4.2647 2.3735 0.0000 6 6 4.2760 -0.0055 -0.0005 7 6 5.7830 -0.0088 -0.0017 8 1 6.1486 1.0180 -0.0020 9 6 6.2828 -0.7209 -1.2323 10 1 6.4750 -1.7832 -1.2009 11 6 6.4946 -0.0162 -2.3983 12 7 6.3327 1.2888 -2.4165 13 14 7.0116 -0.9151 -3.9520 14 1 8.4938 -0.9814 -4.0156 15 1 6.4546 -2.2915 -3.9363 16 1 6.4975 -0.1866 -5.1396 17 6 6.2923 -0.7307 1.2474 18 7 7.7552 -0.6157 1.3171 19 6 3.5815 -1.2007 -0.0055 20 17 4.4455 -2.7063 -0.0122 21 6 2.1973 -1.1975 -0.0005 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5140 25 1 1.6568 2.1321 -0.0004 26 1 4.4617 2.7143 -0.8833 27 1 5.9863 1.7456 -1.6340 28 1 5.8496 -0.2781 2.1346 29 1 6.0126 -1.7831 1.1983 30 1 8.1212 -1.1304 2.1040 31 1 8.1833 -0.9196 0.4555 32 1 1.6559 -2.1320 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281165.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:15 Heat of formation + Delta-G solvation = -39.767152 kcal Electronic energy + Delta-G solvation = -17333.171975 eV Core-core repulsion = 14512.012978 eV Total energy + Delta-G solvation = -2821.158997 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.50594 -36.45368 -35.90637 -35.09923 -32.37090 -31.81705 -29.26285 -28.56155 -25.35264 -23.91727 -22.21754 -21.35611 -19.92177 -17.51386 -16.82672 -15.83645 -15.50670 -14.79613 -14.46535 -13.87585 -13.80036 -13.71297 -13.35282 -12.92488 -12.38719 -12.33243 -12.10339 -11.81398 -11.40227 -11.15394 -10.91561 -10.78793 -10.33322 -10.23386 -10.13639 -9.88594 -9.52484 -8.84382 -8.36521 -8.03908 -7.67732 -7.53952 -6.40710 -4.10996 1.69650 1.84329 2.89727 3.39593 3.43631 3.58103 4.04734 4.48292 4.85403 5.14437 5.25435 5.45308 5.56888 5.58691 5.69031 5.73999 5.91099 6.04209 6.25273 6.37036 6.43250 6.48427 6.76433 6.84021 6.92077 7.05340 7.26352 7.52682 8.09944 8.13537 8.27503 8.39518 8.43546 8.83918 9.59285 10.96470 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.009692 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.505820 B = 2888.388943 C = 3048.811653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.110 3.890 5 O -0.494 6.494 6 C -0.054 4.054 7 C 0.057 3.943 8 H 0.064 0.936 9 C -0.573 4.573 10 H 0.058 0.942 11 C 0.025 3.975 12 N -0.909 5.909 13 Si 1.064 2.936 14 H -0.287 1.287 15 H -0.288 1.288 16 H -0.286 1.286 17 C 0.071 3.929 18 N -0.845 5.845 19 C -0.008 4.008 20 Cl -0.064 7.064 21 C -0.128 4.128 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.122 0.878 26 H 0.391 0.609 27 H 0.269 0.731 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.318 0.682 31 H 0.350 0.650 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 -3.729 3.860 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.095 4.095 3 C -0.165 4.165 4 C 0.065 3.935 5 O -0.305 6.305 6 C -0.056 4.056 7 C 0.037 3.963 8 H 0.082 0.918 9 C -0.611 4.611 10 H 0.077 0.923 11 C -0.180 4.180 12 N -0.547 5.547 13 Si 0.893 3.107 14 H -0.214 1.214 15 H -0.214 1.214 16 H -0.211 1.211 17 C -0.060 4.060 18 N -0.375 5.375 19 C -0.035 4.035 20 Cl -0.035 7.035 21 C -0.147 4.147 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.140 0.860 26 H 0.249 0.751 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.165 0.835 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.590 -2.896 2.972 8.651 hybrid contribution -0.435 -1.310 0.802 1.597 sum -8.026 -4.206 3.774 9.816 Atomic orbital electron populations 1.20669 0.91122 1.02251 1.01962 1.19379 0.95564 0.92082 1.02476 1.21225 0.93522 0.97885 1.03856 1.18155 0.89092 0.85312 1.00967 1.84721 1.76384 1.35463 1.33972 1.21040 1.00526 0.89946 0.94108 1.18047 0.84689 0.99557 0.93963 0.91780 1.21949 1.46859 0.96643 0.95657 0.92333 1.25760 0.94680 0.96026 1.01522 1.70819 1.42335 1.08121 1.33416 0.83605 0.76572 0.74919 0.75654 1.21383 1.21407 1.21136 1.21932 0.87928 0.98768 0.97349 1.58670 1.06074 1.64377 1.08341 1.20432 0.91068 0.87169 1.04813 1.98289 1.77231 1.31451 1.96529 1.20778 0.92056 0.97960 1.03941 0.91525 0.91857 0.91851 0.86027 0.75105 0.91767 0.94568 0.94916 0.87207 0.83540 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.01 36.01 0.36 -0.88 16 2 C -0.09 -1.55 5.88 -104.65 -0.62 -2.17 16 3 C -0.15 -2.62 9.64 -39.43 -0.38 -3.00 16 4 C 0.11 2.32 6.68 -39.22 -0.26 2.05 16 5 O -0.49 -10.33 11.86 -19.42 -0.23 -10.56 16 6 C -0.05 -1.21 4.79 -104.44 -0.50 -1.71 16 7 C 0.06 1.36 1.84 -92.93 -0.17 1.19 16 8 H 0.06 1.73 5.40 -51.93 -0.28 1.45 16 9 C -0.57 -14.71 5.96 -34.44 -0.21 -14.91 16 10 H 0.06 1.51 6.64 -52.49 -0.35 1.16 16 11 C 0.02 0.67 5.46 -17.82 -0.10 0.57 16 12 N -0.91 -25.45 13.62 55.43 0.75 -24.69 16 13 Si 1.06 24.46 29.91 -169.99 -5.08 19.38 16 14 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 17 C 0.07 1.55 5.92 -3.82 -0.02 1.52 16 18 N -0.85 -17.29 9.65 -10.37 -0.10 -17.39 16 19 C -0.01 -0.17 6.03 -39.52 -0.24 -0.40 16 20 Cl -0.06 -1.26 23.17 -51.86 -1.20 -2.47 16 21 C -0.13 -2.27 9.48 -39.52 -0.37 -2.64 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 25 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 26 H 0.39 7.62 7.64 45.56 0.35 7.96 16 27 H 0.27 7.31 4.65 -40.82 -0.19 7.12 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.69 5.11 -51.93 -0.27 0.43 16 30 H 0.32 5.45 9.08 -39.29 -0.36 5.10 16 31 H 0.35 7.46 8.02 -39.30 -0.32 7.15 16 32 H 0.12 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 276.29 15.07 4.16 4.16 Total: -1.00 -28.83 276.29 -6.94 -35.76 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -2.73 Total: 16.19 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -2.51 Total: -20.38 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.65 Total: -42.08 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.23 Total: -10.56 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.20 Total: -2.47 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.83 -6.94 -35.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281165.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.004 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds