Wall clock time and date at job start Mon Mar 30 2020 06:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38731 * 120.03883 * 2 1 4 4 O 1.35905 * 120.04526 * 0.04738 * 3 2 1 5 5 C 1.38717 * 119.90295 * 180.02562 * 3 2 1 6 6 C 1.38173 * 119.97333 * 359.72471 * 5 3 2 7 7 C 1.50699 * 119.96766 * 180.27371 * 6 5 3 8 8 H 1.09004 * 109.47105 * 0.27622 * 7 6 5 9 9 C 1.50701 * 109.47089 * 240.27889 * 7 6 5 10 10 H 1.08007 * 120.00066 * 354.55141 * 9 7 6 11 11 C 1.37872 * 119.99986 * 174.55767 * 9 7 6 12 12 N 1.31509 * 120.00157 * 350.56844 * 11 9 7 13 13 Si 1.86800 * 119.99954 * 170.56744 * 11 9 7 14 14 H 1.48496 * 109.47018 * 89.99983 * 13 11 9 15 15 H 1.48500 * 109.47231 * 210.00041 * 13 11 9 16 16 H 1.48502 * 109.47285 * 330.00279 * 13 11 9 17 17 C 1.52999 * 109.46907 * 120.27580 * 7 6 5 18 18 N 1.46896 * 109.47396 * 296.84148 * 17 7 6 19 19 C 1.38222 * 120.06569 * 0.55294 * 6 5 3 20 20 C 1.38240 * 120.03178 * 180.02562 * 2 1 3 21 21 Cl 1.73601 * 119.98691 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.47643 * 269.97933 * 1 2 3 23 23 H 1.08997 * 109.47134 * 29.97797 * 1 2 3 24 24 H 1.08998 * 109.47579 * 149.97760 * 1 2 3 25 25 H 0.96691 * 114.00047 * 89.99908 * 4 3 2 26 26 H 1.08010 * 120.00930 * 180.02562 * 5 3 2 27 27 H 0.97004 * 120.00372 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.46688 * 56.84479 * 17 7 6 29 29 H 1.09002 * 109.46542 * 176.84248 * 17 7 6 30 30 H 1.00899 * 111.00388 * 184.52270 * 18 17 7 31 31 H 1.00900 * 111.00012 * 308.47899 * 18 17 7 32 32 H 1.07997 * 119.95208 * 179.72676 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2014 1.2010 0.0000 4 8 1.5236 2.3789 0.0010 5 6 3.5886 1.1977 -0.0005 6 6 4.2760 -0.0009 0.0047 7 6 5.7830 -0.0043 0.0103 8 1 6.1487 1.0226 0.0144 9 6 6.2884 -0.7125 -1.2201 10 1 5.5919 -1.1959 -1.8894 11 6 7.6398 -0.7436 -1.4915 12 7 8.4691 -0.0052 -0.7870 13 14 8.2927 -1.8348 -2.8599 14 1 8.3066 -1.0744 -4.1353 15 1 9.6729 -2.2714 -2.5289 16 1 7.4177 -3.0260 -3.0034 17 6 6.2866 -0.7299 1.2596 18 7 5.8574 0.0030 2.4581 19 6 3.5829 -1.1968 -0.0011 20 6 2.1988 -1.1968 -0.0005 21 17 1.3313 -2.7005 -0.0019 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3634 -0.8897 -0.5142 25 1 1.3281 2.7195 0.8846 26 1 4.1310 2.1317 -0.0001 27 1 9.4199 -0.0268 -0.9782 28 1 5.8754 -1.7391 1.2841 29 1 7.3752 -0.7816 1.2356 30 1 6.2392 -0.4147 3.2935 31 1 6.1079 0.9783 2.3946 32 1 4.1222 -2.1325 -0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:19 Heat of formation + Delta-G solvation = -62.611421 kcal Electronic energy + Delta-G solvation = -16764.027201 eV Core-core repulsion = 13941.877603 eV Total energy + Delta-G solvation = -2822.149599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93288 -38.27622 -37.65110 -36.17515 -34.20427 -33.46156 -30.72140 -30.42591 -27.11364 -25.61279 -23.73251 -23.02295 -21.40073 -18.89137 -18.45209 -17.15878 -17.03650 -16.54468 -16.17729 -15.97778 -15.36056 -15.16694 -14.57499 -14.26321 -14.02397 -13.55810 -13.49476 -13.21977 -13.04998 -12.88459 -12.71552 -12.38148 -12.16833 -12.00959 -11.80368 -11.69022 -11.26881 -11.15076 -10.53050 -9.46837 -9.38023 -9.21341 -8.19457 -6.27945 0.28682 0.41942 1.18081 1.38826 1.41775 1.51466 2.39371 2.71466 3.11158 3.37279 3.91892 4.02419 4.06273 4.21799 4.55795 4.60495 4.77300 4.81249 4.84278 4.94350 5.00941 5.26761 5.32565 5.44299 5.46392 5.51650 5.75343 5.87605 5.99963 6.19097 6.46858 6.71109 6.87566 6.90494 7.38941 8.87451 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020964 B = 0.007006 C = 0.006325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.324058 B = 3995.403972 C = 4425.778199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.132 4.132 3 C 0.120 3.880 4 O -0.495 6.495 5 C -0.153 4.153 6 C -0.007 4.007 7 C 0.085 3.915 8 H 0.015 0.985 9 C -0.528 4.528 10 H 0.052 0.948 11 C 0.024 3.976 12 N -0.912 5.912 13 Si 0.946 3.054 14 H -0.278 1.278 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.088 3.912 18 N -0.845 5.845 19 C -0.118 4.118 20 C -0.025 4.025 21 Cl -0.066 7.066 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.408 0.592 26 H 0.123 0.877 27 H 0.263 0.737 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.337 0.663 31 H 0.335 0.665 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 0.296 4.928 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.133 4.133 3 C 0.075 3.925 4 O -0.308 6.308 5 C -0.172 4.172 6 C -0.007 4.007 7 C 0.067 3.933 8 H 0.033 0.967 9 C -0.567 4.567 10 H 0.070 0.930 11 C -0.176 4.176 12 N -0.551 5.551 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.206 1.206 16 H -0.192 1.192 17 C -0.043 4.043 18 N -0.374 5.374 19 C -0.137 4.137 20 C -0.052 4.052 21 Cl -0.037 7.037 22 H 0.103 0.897 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.267 0.733 26 H 0.141 0.859 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.005 -0.068 4.127 13.645 hybrid contribution 1.948 -0.376 -0.123 1.988 sum -11.057 -0.444 4.004 11.768 Atomic orbital electron populations 1.20681 0.88152 1.03617 1.03432 1.20065 0.98292 0.90368 1.04563 1.17923 0.88875 0.85061 1.00635 1.84725 1.76007 1.34882 1.35195 1.21442 0.93765 0.98417 1.03537 1.19927 0.96815 0.91655 0.92319 1.17717 0.86438 0.95957 0.93236 0.96730 1.21327 0.92206 1.34876 1.08275 0.92978 1.25618 0.97290 0.96228 0.98471 1.70038 1.03619 1.39137 1.42294 0.85737 0.77738 0.79743 0.79641 1.20375 1.20613 1.19247 1.21615 0.96902 0.96257 0.89552 1.58908 1.67384 1.06691 1.04384 1.20804 0.91713 0.98925 1.02215 1.20622 0.91657 0.86816 1.06061 1.98309 1.76548 1.31891 1.96977 0.89691 0.90270 0.91085 0.73309 0.85881 0.92788 0.93640 0.96410 0.85103 0.85320 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.39 9.39 71.23 0.67 -1.72 16 2 C -0.13 -4.09 5.90 -19.75 -0.12 -4.21 16 3 C 0.12 3.87 6.68 22.50 0.15 4.02 16 4 O -0.50 -12.85 12.55 -92.49 -1.16 -14.01 16 5 C -0.15 -5.79 9.61 22.37 0.21 -5.58 16 6 C -0.01 -0.28 4.43 -19.88 -0.09 -0.37 16 7 C 0.09 4.11 1.92 -12.29 -0.02 4.09 16 8 H 0.01 0.77 7.82 -2.39 -0.02 0.75 16 9 C -0.53 -28.22 8.19 25.60 0.21 -28.01 16 10 H 0.05 2.81 7.55 -2.91 -0.02 2.79 16 11 C 0.02 1.28 5.18 84.65 0.44 1.72 16 12 N -0.91 -50.66 12.15 21.44 0.26 -50.40 16 13 Si 0.95 42.70 29.55 68.60 2.03 44.72 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 C 0.09 3.91 5.95 86.30 0.51 4.42 16 18 N -0.85 -30.77 9.32 -186.72 -1.74 -32.51 16 19 C -0.12 -4.70 8.40 22.31 0.19 -4.51 16 20 C -0.02 -0.86 6.31 22.31 0.14 -0.72 16 21 Cl -0.07 -1.95 27.29 -2.72 -0.07 -2.02 16 22 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.08 1.72 7.53 -2.39 -0.02 1.70 16 24 H 0.07 1.62 6.90 -2.39 -0.02 1.60 16 25 H 0.41 6.33 9.06 -74.06 -0.67 5.65 16 26 H 0.12 4.58 7.94 -2.91 -0.02 4.56 16 27 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 28 H 0.05 2.04 7.28 -2.39 -0.02 2.02 16 29 H 0.02 0.89 6.83 -2.39 -0.02 0.87 16 30 H 0.34 10.57 9.08 -89.69 -0.81 9.75 16 31 H 0.34 11.91 8.93 -89.69 -0.80 11.11 16 32 H 0.12 4.91 7.55 -2.91 -0.02 4.89 16 Total: -1.00 -59.56 287.06 0.50 -59.07 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: -1.11 Total: 26.02 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 2.30 Total: -30.86 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.48 Total: -82.91 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.16 Total: -14.01 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.02 kcal Total: -59.56 0.50 -59.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.545 kcal (2) G-P(sol) polarization free energy of solvation -59.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds