Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38725 * 120.03568 * 2 1 4 4 O 1.35896 * 120.05041 * 359.97438 * 3 2 1 5 5 C 1.38725 * 119.90152 * 179.97438 * 3 2 1 6 6 C 1.38170 * 119.97453 * 359.97438 * 5 3 2 7 7 C 1.50698 * 119.96862 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47083 * 359.97438 * 7 6 5 9 9 C 1.50697 * 109.46993 * 119.99852 * 7 6 5 10 10 H 1.07991 * 120.00449 * 359.72131 * 9 7 6 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 7 14 14 H 1.48493 * 109.47326 * 90.00142 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99892 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99603 * 13 11 9 17 17 C 1.53006 * 109.46561 * 239.99651 * 7 6 5 18 18 N 1.46896 * 109.47066 * 65.00203 * 17 7 6 19 19 C 1.38231 * 120.06206 * 0.27117 * 6 5 3 20 20 C 1.38246 * 120.03281 * 179.97438 * 2 1 3 21 21 Cl 1.73600 * 119.98491 * 0.02562 * 20 2 1 22 22 H 1.09003 * 109.46996 * 90.00205 * 1 2 3 23 23 H 1.08998 * 109.47470 * 210.00241 * 1 2 3 24 24 H 1.08996 * 109.47102 * 330.00347 * 1 2 3 25 25 H 0.96704 * 114.00108 * 269.98177 * 4 3 2 26 26 H 1.08008 * 120.01367 * 180.02562 * 5 3 2 27 27 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.46686 * 184.99687 * 17 7 6 29 29 H 1.09000 * 109.47280 * 304.99843 * 17 7 6 30 30 H 1.00900 * 110.99907 * 56.04362 * 18 17 7 31 31 H 1.00901 * 111.00006 * 179.97438 * 18 17 7 32 32 H 1.08002 * 119.94443 * 179.73375 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.2010 0.0000 4 8 1.5236 2.3789 -0.0005 5 6 3.5886 1.1977 0.0005 6 6 4.2761 -0.0008 0.0016 7 6 5.7831 -0.0042 0.0028 8 1 6.1487 1.0227 0.0021 9 6 6.2828 -0.7151 1.2339 10 1 5.5797 -1.1197 1.9468 11 6 7.6380 -0.8445 1.4530 12 7 8.4944 -0.3522 0.5846 13 14 8.2575 -1.7190 2.9829 14 1 8.4177 -3.1669 2.6948 15 1 9.5676 -1.1461 3.3841 16 1 7.2799 -1.5389 4.0861 17 6 6.2923 -0.7272 -1.2458 18 7 5.9063 0.0317 -2.4428 19 6 3.5829 -1.1967 -0.0035 20 6 2.1989 -1.1968 0.0005 21 17 1.3314 -2.7005 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.3281 2.7198 -0.8841 26 1 4.1310 2.1317 0.0010 27 1 9.4477 -0.4435 0.7385 28 1 7.3784 -0.8078 -1.2013 29 1 5.8555 -1.7248 -1.2915 30 1 6.2452 0.9809 -2.3940 31 1 6.2317 -0.4255 -3.2814 32 1 4.1223 -2.1324 -0.0070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -60.994673 kcal Electronic energy + Delta-G solvation = -16770.819077 eV Core-core repulsion = 13948.739585 eV Total energy + Delta-G solvation = -2822.079491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93295 -38.27433 -37.65310 -36.18816 -34.14443 -33.46440 -30.72012 -30.41637 -27.10310 -25.61619 -23.72954 -22.98144 -21.38191 -18.89491 -18.43309 -17.17816 -17.03759 -16.54663 -16.17819 -15.98411 -15.36281 -15.14172 -14.56926 -14.22785 -13.94063 -13.53177 -13.48836 -13.19234 -13.04791 -12.88556 -12.74266 -12.37369 -12.15238 -12.00877 -11.79029 -11.71144 -11.21528 -11.16060 -10.55861 -9.47165 -9.37442 -9.17733 -8.13574 -6.28616 0.28382 0.41681 1.17679 1.39688 1.42079 1.51410 2.39493 2.71199 3.12098 3.37133 3.92266 4.03372 4.08625 4.22852 4.56302 4.60713 4.78851 4.81141 4.84230 4.97503 5.07601 5.29597 5.32718 5.45052 5.46573 5.55351 5.80703 5.91517 5.99975 6.19847 6.52573 6.71220 6.88924 6.91026 7.39173 8.87697 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.006980 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.832586 B = 4010.272225 C = 4408.460579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.132 4.132 3 C 0.120 3.880 4 O -0.495 6.495 5 C -0.153 4.153 6 C -0.007 4.007 7 C 0.088 3.912 8 H 0.010 0.990 9 C -0.527 4.527 10 H 0.051 0.949 11 C 0.022 3.978 12 N -0.911 5.911 13 Si 0.950 3.050 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.273 1.273 17 C 0.078 3.922 18 N -0.847 5.847 19 C -0.118 4.118 20 C -0.025 4.025 21 Cl -0.066 7.066 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.408 0.592 26 H 0.124 0.876 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.334 0.666 31 H 0.336 0.664 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 0.986 -4.426 13.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.133 4.133 3 C 0.075 3.925 4 O -0.308 6.308 5 C -0.171 4.171 6 C -0.008 4.008 7 C 0.069 3.931 8 H 0.028 0.972 9 C -0.565 4.565 10 H 0.069 0.931 11 C -0.178 4.178 12 N -0.550 5.550 13 Si 0.776 3.224 14 H -0.200 1.200 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.052 4.052 18 N -0.375 5.375 19 C -0.137 4.137 20 C -0.052 4.052 21 Cl -0.037 7.037 22 H 0.103 0.897 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.267 0.733 26 H 0.142 0.858 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.871 0.671 -3.612 13.385 hybrid contribution 1.885 -0.437 0.132 1.939 sum -10.986 0.234 -3.480 11.526 Atomic orbital electron populations 1.20682 0.88132 1.03625 1.03431 1.20069 0.98306 0.90363 1.04579 1.17925 0.88884 0.85064 1.00637 1.84725 1.76005 1.34849 1.35196 1.21448 0.93753 0.98418 1.03504 1.19960 0.96921 0.91651 0.92265 1.17707 0.86356 0.95637 0.93433 0.97177 1.21357 0.91820 1.36880 1.06456 0.93109 1.25628 0.97029 0.96016 0.99109 1.69965 1.02262 1.46285 1.36520 0.85669 0.77649 0.78910 0.80188 1.19973 1.20731 1.19727 1.21703 0.99099 0.95315 0.89130 1.58912 1.67930 1.06266 1.04427 1.20802 0.91717 0.98927 1.02254 1.20622 0.91644 0.86835 1.06095 1.98308 1.76537 1.31900 1.96979 0.89697 0.91089 0.90243 0.73307 0.85798 0.92795 0.94064 0.94372 0.85462 0.85289 0.86496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.40 9.39 71.24 0.67 -1.73 16 2 C -0.13 -4.12 5.90 -19.75 -0.12 -4.24 16 3 C 0.12 3.88 6.68 22.50 0.15 4.03 16 4 O -0.50 -12.83 12.55 -92.38 -1.16 -13.99 16 5 C -0.15 -5.79 9.61 22.37 0.21 -5.58 16 6 C -0.01 -0.32 4.46 -19.88 -0.09 -0.41 16 7 C 0.09 4.24 2.10 -12.29 -0.03 4.21 16 8 H 0.01 0.53 7.87 -2.39 -0.02 0.51 16 9 C -0.53 -28.17 8.24 25.60 0.21 -27.96 16 10 H 0.05 2.76 7.61 -2.92 -0.02 2.73 16 11 C 0.02 1.16 5.30 84.66 0.45 1.61 16 12 N -0.91 -49.99 11.28 21.45 0.24 -49.75 16 13 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 17 C 0.08 3.56 5.91 86.31 0.51 4.07 16 18 N -0.85 -31.53 9.34 -186.71 -1.74 -33.28 16 19 C -0.12 -4.77 8.44 22.31 0.19 -4.58 16 20 C -0.03 -0.88 6.31 22.31 0.14 -0.74 16 21 Cl -0.07 -1.96 27.29 -2.72 -0.07 -2.04 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 1.63 6.90 -2.39 -0.02 1.61 16 24 H 0.08 1.73 7.53 -2.39 -0.02 1.71 16 25 H 0.41 6.33 9.06 -74.05 -0.67 5.66 16 26 H 0.12 4.59 7.94 -2.91 -0.02 4.57 16 27 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 28 H 0.04 2.11 5.94 -2.39 -0.01 2.10 16 29 H 0.04 1.76 7.21 -2.39 -0.02 1.74 16 30 H 0.33 12.07 8.99 -89.69 -0.81 11.26 16 31 H 0.34 10.84 9.08 -89.69 -0.81 10.03 16 32 H 0.12 4.94 7.53 -2.91 -0.02 4.92 16 Total: -1.00 -59.07 285.77 0.48 -58.59 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -1.11 Total: 27.02 kcal Atomic # 6 Polarization: -33.61 SS G_CDS: 2.30 Total: -31.31 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.50 Total: -83.02 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.16 Total: -13.99 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.07 Total: -2.04 kcal Total: -59.07 0.48 -58.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.408 kcal (2) G-P(sol) polarization free energy of solvation -59.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds