Wall clock time and date at job start Mon Mar 30 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00279 * 2 1 4 4 H 1.48499 * 109.47260 * 240.00238 * 3 2 1 5 5 H 1.48501 * 109.46855 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47334 * 120.00152 * 3 2 1 7 7 C 1.37877 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00558 * 185.09047 * 7 2 1 9 9 C 1.50701 * 119.99771 * 5.08411 * 7 2 1 10 10 H 1.09001 * 109.47577 * 4.09530 * 9 7 2 11 11 C 1.50692 * 109.47226 * 124.10121 * 9 7 2 12 12 C 1.34503 * 125.77761 * 259.99887 * 11 9 7 13 13 C 1.41400 * 106.85105 * 180.22859 * 12 11 9 14 14 C 1.34652 * 106.83352 * 359.62685 * 13 12 11 15 15 Cl 1.73602 * 125.80438 * 180.13304 * 14 13 12 16 16 O 1.34309 * 108.39499 * 0.37709 * 14 13 12 17 17 N 1.46913 * 109.46966 * 244.09929 * 9 7 2 18 18 C 1.48533 * 110.99625 * 309.77802 * 17 9 7 19 19 C 1.54940 * 103.22274 * 159.72213 * 18 17 9 20 20 C 1.54597 * 102.92114 * 322.58725 * 19 18 17 21 21 C 1.47903 * 110.99963 * 67.17710 * 17 9 7 22 22 H 0.96998 * 119.99605 * 354.99344 * 1 2 3 23 23 H 1.07999 * 126.57034 * 359.96321 * 12 11 9 24 24 H 1.08001 * 126.58391 * 179.77567 * 13 12 11 25 25 H 1.09000 * 110.66629 * 278.15587 * 18 17 9 26 26 H 1.09000 * 110.67003 * 41.28795 * 18 17 9 27 27 H 1.08991 * 110.72422 * 204.22580 * 19 18 17 28 28 H 1.09002 * 110.72450 * 80.94065 * 19 18 17 29 29 H 1.09004 * 110.30387 * 263.04013 * 20 19 18 30 30 H 1.08998 * 110.30844 * 140.87838 * 20 19 18 31 31 H 1.09006 * 109.91546 * 333.50835 * 21 17 9 32 32 H 1.08993 * 109.91560 * 94.80185 * 21 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1960 0.0824 9 6 1.2555 -2.4965 -0.1168 10 1 0.1945 -2.2938 -0.2631 11 6 1.7845 -3.2771 -1.2922 12 6 1.2143 -3.3506 -2.5081 13 6 2.0367 -4.1881 -3.2966 14 6 3.0659 -4.5699 -2.5168 15 17 4.3739 -5.6057 -2.9965 16 8 2.9058 -4.0175 -1.3031 17 7 1.4394 -3.2786 1.1132 18 6 2.8774 -3.3751 1.4725 19 6 2.8428 -3.7328 2.9797 20 6 1.6455 -2.9070 3.5036 21 6 0.7797 -2.6219 2.2625 22 1 -0.4849 0.8369 0.0733 23 1 0.3009 -2.8667 -2.8208 24 1 1.8724 -4.4660 -4.3272 25 1 3.3646 -4.1649 0.9007 26 1 3.3782 -2.4198 1.3152 27 1 3.7668 -3.4264 3.4700 28 1 2.6662 -4.7993 3.1191 29 1 1.9942 -1.9729 3.9443 30 1 1.0797 -3.4834 4.2354 31 1 0.7186 -1.5471 2.0912 32 1 -0.2189 -3.0355 2.4034 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260300273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:08 Heat of formation + Delta-G solvation = 15.286292 kcal Electronic energy + Delta-G solvation = -17277.719718 eV Core-core repulsion = 14458.948018 eV Total energy + Delta-G solvation = -2818.771700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.79410 -37.92820 -36.48712 -33.62277 -32.28621 -31.30363 -28.42842 -27.82231 -25.99244 -23.17283 -21.21525 -20.41683 -19.85217 -19.37351 -17.25361 -16.42205 -15.42689 -15.17006 -14.98096 -14.56486 -13.38018 -13.19593 -12.78601 -12.53734 -12.37621 -12.15380 -11.99066 -11.69963 -11.17715 -11.06686 -10.99882 -10.82857 -10.58694 -10.45810 -10.21695 -10.04826 -9.87793 -9.46778 -9.20195 -8.84039 -7.64618 -7.17610 -6.28748 -4.44605 1.80264 2.37160 3.15030 3.21548 3.24671 3.37210 4.19440 4.30757 4.95426 5.22776 5.50173 5.54240 5.60130 5.69523 6.01933 6.23183 6.28723 6.34369 6.48389 6.49712 6.56322 6.67854 6.77347 6.93929 6.97173 7.10180 7.14690 7.22345 7.58764 7.76467 7.91971 8.05600 8.26324 8.69757 9.23555 10.69309 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.017711 B = 0.008625 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.551573 B = 3245.568847 C = 4112.899288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.249 3.751 10 H 0.113 0.887 11 C 0.095 3.905 12 C -0.247 4.247 13 C -0.166 4.166 14 C -0.020 4.020 15 Cl -0.009 7.009 16 O -0.165 6.165 17 N -0.522 5.522 18 C 0.035 3.965 19 C -0.123 4.123 20 C -0.127 4.127 21 C 0.046 3.954 22 H 0.271 0.729 23 H 0.147 0.853 24 H 0.145 0.855 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 -5.874 -0.280 6.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.143 3.857 10 H 0.131 0.869 11 C 0.043 3.957 12 C -0.267 4.267 13 C -0.186 4.186 14 C -0.095 4.095 15 Cl 0.020 6.980 16 O -0.062 6.062 17 N -0.246 5.246 18 C -0.093 4.093 19 C -0.161 4.161 20 C -0.165 4.165 21 C -0.082 4.082 22 H 0.081 0.919 23 H 0.165 0.835 24 H 0.162 0.838 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.214 -6.400 -0.256 7.166 hybrid contribution 0.936 1.636 -0.250 1.901 sum 4.150 -4.764 -0.506 6.338 Atomic orbital electron populations 1.69812 1.05980 1.28137 1.47524 1.25016 0.94930 0.99558 0.93051 0.86572 0.79789 0.82259 0.79113 1.19779 1.20887 1.19920 1.21378 0.94187 0.90221 1.52258 0.91856 1.18613 0.98966 0.86607 0.81503 0.86916 1.24008 0.82537 0.89909 0.99246 1.21308 1.04354 1.07077 0.93913 1.21316 0.94721 1.02197 1.00394 1.22137 0.95555 1.04352 0.87470 1.98347 1.47491 1.63775 1.88435 1.84055 1.40561 1.51170 1.30415 1.65215 1.08729 1.47289 1.03387 1.23168 0.91851 1.00797 0.93478 1.22451 0.97363 0.99420 0.96871 1.22358 0.96931 0.99158 0.98044 1.22560 0.96360 1.00401 0.88854 0.91926 0.83494 0.83762 0.91567 0.92043 0.92497 0.92103 0.92410 0.92593 0.90786 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.78 12.48 55.43 0.69 -22.09 16 2 C 0.08 2.04 4.93 -17.82 -0.09 1.95 16 3 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -13.72 6.25 -34.44 -0.22 -13.94 16 8 H 0.06 1.65 6.41 -52.49 -0.34 1.32 16 9 C 0.25 5.96 2.47 -70.01 -0.17 5.79 16 10 H 0.11 2.93 6.91 -51.93 -0.36 2.57 16 11 C 0.10 2.17 6.03 -35.63 -0.21 1.95 16 12 C -0.25 -5.16 10.80 -39.70 -0.43 -5.59 16 13 C -0.17 -3.08 10.88 -39.65 -0.43 -3.51 16 14 C -0.02 -0.38 7.94 29.46 0.23 -0.15 16 15 Cl -0.01 -0.14 29.30 -51.86 -1.52 -1.66 16 16 O -0.16 -3.60 8.50 5.51 0.05 -3.56 16 17 N -0.52 -11.51 5.24 -225.27 -1.18 -12.69 16 18 C 0.04 0.72 5.54 -1.90 -0.01 0.71 16 19 C -0.12 -2.11 7.06 -24.87 -0.18 -2.29 16 20 C -0.13 -2.20 6.93 -25.38 -0.18 -2.38 16 21 C 0.05 0.96 6.46 -2.76 -0.02 0.94 16 22 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 23 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 24 H 0.14 2.21 8.06 -52.49 -0.42 1.78 16 25 H 0.07 1.37 6.65 -51.93 -0.35 1.03 16 26 H 0.06 1.37 5.59 -51.93 -0.29 1.08 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.74 6.34 -51.93 -0.33 1.41 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 278.72 15.07 4.20 4.20 Total: -1.00 -25.59 278.72 -8.23 -33.83 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.75 Total: 3.45 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.70 Total: -16.50 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: -0.49 Total: -34.78 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: 0.05 Total: -3.56 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.59 -8.23 -33.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260300273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.113 kcal (2) G-P(sol) polarization free energy of solvation -25.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds