Wall clock time and date at job start Mon Mar 30 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00502 * 2 1 4 4 H 1.48497 * 109.47162 * 270.00269 * 3 2 1 5 5 H 1.48506 * 109.46620 * 30.00317 * 3 2 1 6 6 H 1.48495 * 109.47246 * 149.99918 * 3 2 1 7 7 C 1.37883 * 119.99308 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00222 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.27467 * 57.91216 * 9 7 2 11 11 C 1.54601 * 110.30749 * 295.71447 * 9 7 2 12 12 C 1.54936 * 102.92136 * 219.12850 * 11 9 7 13 13 N 1.48805 * 103.35040 * 37.31086 * 12 11 9 14 14 C 1.47901 * 105.68057 * 321.02306 * 13 12 11 15 15 H 1.08999 * 109.91786 * 265.64470 * 14 13 12 16 16 C 1.53005 * 109.91854 * 144.54261 * 14 13 12 17 17 C 1.50700 * 109.46666 * 66.80500 * 16 14 13 18 18 C 1.34495 * 125.77494 * 90.00199 * 17 16 14 19 19 C 1.41406 * 106.84867 * 179.97438 * 18 17 16 20 20 C 1.34647 * 106.83471 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 125.80614 * 180.02562 * 20 19 18 22 22 O 1.34312 * 108.39638 * 0.02562 * 20 19 18 23 23 H 0.97003 * 119.99365 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.72620 * 337.48810 * 11 9 7 25 25 H 1.09004 * 110.71705 * 100.77042 * 11 9 7 26 26 H 1.09000 * 110.66404 * 155.85576 * 12 11 9 27 27 H 1.09007 * 110.66451 * 278.81548 * 12 11 9 28 28 H 1.00896 * 111.18935 * 200.49556 * 13 12 11 29 29 H 1.08995 * 109.47236 * 306.80657 * 16 14 13 30 30 H 1.09000 * 109.47077 * 186.80471 * 16 14 13 31 31 H 1.07996 * 126.57990 * 359.73555 * 18 17 16 32 32 H 1.08006 * 126.58264 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5913 -2.5545 -0.8665 11 6 0.4383 -2.6495 1.3061 12 6 0.6031 -4.1522 1.6456 13 7 2.0076 -4.4421 1.2486 14 6 2.2343 -3.6843 -0.0011 15 1 2.0443 -4.3240 -0.8629 16 6 3.6736 -3.1671 -0.0432 17 6 4.6228 -4.3320 -0.1573 18 6 5.0638 -4.8775 -1.3049 19 6 5.9295 -5.9373 -0.9489 20 6 5.9661 -5.9757 0.3966 21 17 6.8832 -7.0946 1.3561 22 8 5.1725 -5.0011 0.8702 23 1 -0.4849 0.8401 0.0004 24 1 0.8591 -2.0272 2.0958 25 1 -0.6106 -2.4047 1.1382 26 1 0.4611 -4.3233 2.7127 27 1 -0.0935 -4.7566 1.0644 28 1 2.1487 -5.4305 1.1027 29 1 3.8873 -2.6125 0.8704 30 1 3.7988 -2.5107 -0.9044 31 1 4.8033 -4.5681 -2.3063 32 1 6.4596 -6.5907 -1.6261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:35 Heat of formation + Delta-G solvation = 14.297541 kcal Electronic energy + Delta-G solvation = -16797.088272 eV Core-core repulsion = 13978.273696 eV Total energy + Delta-G solvation = -2818.814576 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.35935 -37.93188 -36.87618 -33.06365 -32.75725 -31.90627 -29.18821 -28.05655 -24.92959 -24.02360 -21.71435 -20.67802 -19.88795 -19.00629 -17.56063 -16.23058 -16.13839 -15.60327 -14.59414 -14.31034 -13.95655 -13.46736 -13.15717 -12.69077 -12.52457 -12.13022 -12.11585 -11.75927 -11.41278 -11.30882 -10.94943 -10.81228 -10.69113 -10.49198 -10.15920 -9.77204 -9.72528 -9.37154 -8.78356 -8.45150 -8.09623 -7.74750 -6.06251 -4.08889 1.37018 1.81017 2.73608 3.28503 3.36326 3.39058 3.75013 4.40621 4.94446 5.09726 5.17414 5.28254 5.77657 5.78174 5.90573 5.92152 6.01757 6.11690 6.14820 6.32777 6.38568 6.55527 6.63790 6.89106 7.06531 7.15966 7.29334 7.41453 7.57548 7.83488 7.96785 8.04686 8.35016 8.90805 9.56032 11.03911 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.005612 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.441951 B = 4988.360353 C = 5547.099874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.047 3.953 10 H 0.033 0.967 11 C -0.092 4.092 12 C 0.031 3.969 13 N -0.666 5.666 14 C 0.081 3.919 15 H 0.030 0.970 16 C -0.020 4.020 17 C 0.045 3.955 18 C -0.233 4.233 19 C -0.172 4.172 20 C 0.000 4.000 21 Cl 0.006 6.994 22 O -0.158 6.158 23 H 0.260 0.740 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.318 0.682 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -10.744 -0.637 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.089 0.911 9 C 0.028 3.972 10 H 0.051 0.949 11 C -0.131 4.131 12 C -0.097 4.097 13 N -0.294 5.294 14 C -0.028 4.028 15 H 0.048 0.952 16 C -0.057 4.057 17 C -0.007 4.007 18 C -0.252 4.252 19 C -0.192 4.192 20 C -0.076 4.076 21 Cl 0.035 6.965 22 O -0.055 6.055 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.132 0.868 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.171 0.829 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.453 -10.190 0.222 13.241 hybrid contribution 0.054 0.082 -0.673 0.680 sum 8.507 -10.108 -0.451 13.219 Atomic orbital electron populations 1.69973 1.05978 1.26557 1.50142 1.24990 0.94780 0.99085 0.94944 0.86659 0.80016 0.83692 0.78067 1.20729 1.21334 1.19767 1.21412 0.93420 0.89937 1.51244 0.91053 1.19503 0.92036 0.91384 0.94298 0.94881 1.22411 1.00190 0.90769 0.99683 1.23178 0.88298 0.99288 0.98985 1.62998 1.23808 1.11061 1.31546 1.22294 0.94683 0.96352 0.89519 0.95164 1.20720 0.90022 0.89547 1.05438 1.23537 0.96986 0.96282 0.83846 1.21550 1.03996 1.00040 0.99622 1.21424 1.03692 1.01875 0.92234 1.22274 1.01002 0.94625 0.89689 1.98388 1.69176 1.55362 1.73596 1.84054 1.48050 1.36600 1.36793 0.93058 0.91944 0.92318 0.91855 0.95720 0.86802 0.88577 0.87158 0.82915 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.54 12.63 55.43 0.70 -23.84 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.59 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -13.16 7.50 -34.44 -0.26 -13.42 16 8 H 0.07 1.71 4.70 -52.49 -0.25 1.47 16 9 C 0.05 1.09 2.87 -90.41 -0.26 0.83 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.09 -2.08 5.75 -24.87 -0.14 -2.22 16 12 C 0.03 0.59 7.56 -1.75 -0.01 0.58 16 13 N -0.67 -12.55 6.94 -102.92 -0.71 -13.26 16 14 C 0.08 1.60 3.25 -66.64 -0.22 1.38 16 15 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 16 C -0.02 -0.37 3.91 -27.88 -0.11 -0.48 16 17 C 0.04 0.76 6.37 -35.63 -0.23 0.53 16 18 C -0.23 -3.48 10.81 -39.70 -0.43 -3.91 16 19 C -0.17 -2.37 10.88 -39.65 -0.43 -2.80 16 20 C 0.00 0.00 7.93 29.46 0.23 0.23 16 21 Cl 0.01 0.08 29.30 -51.86 -1.52 -1.44 16 22 O -0.16 -2.74 10.65 5.50 0.06 -2.69 16 23 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 24 H 0.06 1.53 7.86 -51.93 -0.41 1.12 16 25 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.32 5.45 8.93 -39.29 -0.35 5.10 16 29 H 0.10 1.96 7.33 -51.93 -0.38 1.58 16 30 H 0.11 2.02 6.89 -51.93 -0.36 1.66 16 31 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 283.36 15.07 4.27 4.27 Total: -1.00 -26.77 283.36 -8.01 -34.78 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -3.84 Total: 4.41 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -1.95 Total: -17.67 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.01 Total: -37.10 kcal Atomic # 8 Polarization: -2.74 SS G_CDS: 0.06 Total: -2.69 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.52 Total: -1.44 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.77 -8.01 -34.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.075 kcal (2) G-P(sol) polarization free energy of solvation -26.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds