Wall clock time and date at job start Mon Mar 30 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00502 * 2 1 4 4 H 1.48497 * 109.47162 * 270.00269 * 3 2 1 5 5 H 1.48506 * 109.46620 * 30.00317 * 3 2 1 6 6 H 1.48495 * 109.47246 * 149.99918 * 3 2 1 7 7 C 1.37883 * 119.99308 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00222 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.27467 * 57.91216 * 9 7 2 11 11 C 1.54601 * 110.30749 * 295.71447 * 9 7 2 12 12 C 1.54936 * 102.92136 * 219.12850 * 11 9 7 13 13 N 1.48805 * 103.35040 * 37.31086 * 12 11 9 14 14 C 1.47901 * 105.68057 * 321.02306 * 13 12 11 15 15 H 1.08999 * 109.91786 * 265.64470 * 14 13 12 16 16 C 1.53005 * 109.91854 * 144.54261 * 14 13 12 17 17 C 1.50700 * 109.46666 * 66.80500 * 16 14 13 18 18 C 1.34495 * 125.77494 * 90.00199 * 17 16 14 19 19 C 1.41406 * 106.84867 * 179.97438 * 18 17 16 20 20 C 1.34647 * 106.83471 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 125.80614 * 180.02562 * 20 19 18 22 22 O 1.34312 * 108.39638 * 0.02562 * 20 19 18 23 23 H 0.97003 * 119.99365 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.72620 * 337.48810 * 11 9 7 25 25 H 1.09004 * 110.71705 * 100.77042 * 11 9 7 26 26 H 1.09000 * 110.66404 * 155.85576 * 12 11 9 27 27 H 1.09007 * 110.66451 * 278.81548 * 12 11 9 28 28 H 1.00896 * 111.18935 * 200.49556 * 13 12 11 29 29 H 1.08995 * 109.47236 * 306.80657 * 16 14 13 30 30 H 1.09000 * 109.47077 * 186.80471 * 16 14 13 31 31 H 1.07996 * 126.57990 * 359.73555 * 18 17 16 32 32 H 1.08006 * 126.58264 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.5913 -2.5545 -0.8665 11 6 0.4383 -2.6495 1.3061 12 6 0.6031 -4.1522 1.6456 13 7 2.0076 -4.4421 1.2486 14 6 2.2343 -3.6843 -0.0011 15 1 2.0443 -4.3240 -0.8629 16 6 3.6736 -3.1671 -0.0432 17 6 4.6228 -4.3320 -0.1573 18 6 5.0638 -4.8775 -1.3049 19 6 5.9295 -5.9373 -0.9489 20 6 5.9661 -5.9757 0.3966 21 17 6.8832 -7.0946 1.3561 22 8 5.1725 -5.0011 0.8702 23 1 -0.4849 0.8401 0.0004 24 1 0.8591 -2.0272 2.0958 25 1 -0.6106 -2.4047 1.1382 26 1 0.4611 -4.3233 2.7127 27 1 -0.0935 -4.7566 1.0644 28 1 2.1487 -5.4305 1.1027 29 1 3.8873 -2.6125 0.8704 30 1 3.7988 -2.5107 -0.9044 31 1 4.8033 -4.5681 -2.3063 32 1 6.4596 -6.5907 -1.6261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308066.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:35 Heat of formation + Delta-G solvation = -1.486263 kcal Electronic energy + Delta-G solvation = -16797.772709 eV Core-core repulsion = 13978.273696 eV Total energy + Delta-G solvation = -2819.499013 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.55700 -39.58666 -37.91301 -34.69417 -34.32355 -33.27232 -30.99370 -29.47393 -26.61691 -25.72365 -22.88676 -22.09466 -21.38061 -20.74454 -18.86446 -17.78133 -17.69573 -17.05293 -16.46436 -15.74175 -15.53191 -14.98662 -14.31532 -14.08728 -13.81903 -13.79230 -13.53761 -13.27412 -12.90353 -12.77916 -12.53476 -12.47478 -12.31686 -12.14044 -11.88471 -11.55782 -11.20705 -10.86106 -10.65293 -10.45530 -9.44804 -9.13677 -8.07848 -6.14453 0.28480 0.62255 1.44651 1.47402 1.55512 1.59350 2.47745 2.54155 3.25748 3.42673 3.91688 4.03298 4.22431 4.34009 4.38833 4.52464 4.64013 4.74273 4.79531 4.88553 4.96036 5.01717 5.19064 5.27363 5.40660 5.52459 5.60385 5.71195 5.88332 6.06807 6.18339 6.38199 6.62243 6.93349 7.53120 9.02340 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.028121 B = 0.005612 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.441951 B = 4988.360353 C = 5547.099874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.081 0.919 9 C 0.038 3.962 10 H 0.005 0.995 11 C -0.087 4.087 12 C 0.043 3.957 13 N -0.668 5.668 14 C 0.090 3.910 15 H 0.041 0.959 16 C -0.009 4.009 17 C 0.019 3.981 18 C -0.220 4.220 19 C -0.165 4.165 20 C -0.010 4.010 21 Cl 0.026 6.974 22 O -0.179 6.179 23 H 0.257 0.743 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.333 0.667 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.901 -12.159 -1.093 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.099 0.901 9 C 0.019 3.981 10 H 0.023 0.977 11 C -0.126 4.126 12 C -0.086 4.086 13 N -0.297 5.297 14 C -0.020 4.020 15 H 0.059 0.941 16 C -0.046 4.046 17 C -0.031 4.031 18 C -0.239 4.239 19 C -0.185 4.185 20 C -0.086 4.086 21 Cl 0.055 6.945 22 O -0.077 6.077 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.189 0.811 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 10.125 -11.623 -0.238 15.416 hybrid contribution -0.418 0.435 -0.523 0.799 sum 9.707 -11.188 -0.761 14.831 Atomic orbital electron populations 1.70103 1.07318 1.26951 1.51838 1.25720 0.95457 1.02219 0.95163 0.85733 0.78881 0.80000 0.78152 1.20092 1.21820 1.19108 1.21842 0.94132 0.90755 1.49636 0.90116 1.19479 0.92584 0.92603 0.93420 0.97698 1.22199 0.98551 0.93325 0.98550 1.23073 0.88804 0.96404 1.00328 1.62969 1.23607 1.12059 1.31081 1.22105 0.94527 0.95019 0.90354 0.94064 1.20363 0.89869 0.90274 1.04118 1.23133 0.98429 0.96943 0.84634 1.21853 1.02874 0.99449 0.99747 1.21786 1.03011 1.01546 0.92159 1.22701 1.00787 0.94403 0.90676 1.98396 1.68499 1.54378 1.73272 1.84003 1.48861 1.37478 1.37404 0.93402 0.94555 0.94280 0.90166 0.94061 0.85193 0.90970 0.87323 0.81114 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.37 12.63 21.45 0.27 -52.10 16 2 C 0.01 0.69 5.34 84.66 0.45 1.14 16 3 Si 0.95 42.41 29.54 68.60 2.03 44.43 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.53 -26.87 7.50 25.60 0.19 -26.68 16 8 H 0.08 3.90 4.70 -2.91 -0.01 3.88 16 9 C 0.04 1.81 2.87 -10.66 -0.03 1.78 16 10 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 11 C -0.09 -4.04 5.75 31.80 0.18 -3.86 16 12 C 0.04 1.57 7.56 86.60 0.65 2.22 16 13 N -0.67 -24.29 6.94 -479.52 -3.33 -27.61 16 14 C 0.09 3.48 3.25 45.06 0.15 3.62 16 15 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 16 C -0.01 -0.32 3.91 29.85 0.12 -0.20 16 17 C 0.02 0.62 6.37 24.83 0.16 0.77 16 18 C -0.22 -5.96 10.81 22.19 0.24 -5.72 16 19 C -0.17 -3.99 10.88 22.23 0.24 -3.75 16 20 C -0.01 -0.28 7.93 67.00 0.53 0.26 16 21 Cl 0.03 0.58 29.30 -2.72 -0.08 0.50 16 22 O -0.18 -5.95 10.65 -3.24 -0.03 -5.98 16 23 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 24 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 25 H 0.04 1.91 8.12 -2.38 -0.02 1.89 16 26 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.33 10.67 8.93 -89.70 -0.80 9.87 16 29 H 0.07 2.96 7.33 -2.39 -0.02 2.94 16 30 H 0.11 3.93 6.89 -2.39 -0.02 3.91 16 31 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -57.52 283.36 2.08 -55.44 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.34 Total: 15.73 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 2.89 Total: -30.41 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -3.06 Total: -79.71 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.03 Total: -5.98 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -0.08 Total: 0.50 kcal Total: -57.52 2.08 -55.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308066.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.949 kcal (2) G-P(sol) polarization free energy of solvation -57.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds