Wall clock time and date at job start Mon Mar 30 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48493 * 109.47384 * 270.00106 * 3 2 1 5 5 H 1.48504 * 109.47085 * 30.00181 * 3 2 1 6 6 H 1.48508 * 109.47277 * 149.99915 * 3 2 1 7 7 C 1.37869 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99813 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00485 * 179.97438 * 7 2 1 10 10 H 1.09009 * 110.36796 * 57.81487 * 9 7 2 11 11 C 1.54260 * 110.32374 * 295.63821 * 9 7 2 12 12 C 1.54383 * 105.05657 * 241.10217 * 11 9 7 13 13 N 1.48557 * 104.59308 * 336.14035 * 12 11 9 14 14 C 1.48554 * 104.22123 * 39.48997 * 13 12 11 15 15 H 1.09000 * 110.41851 * 79.41101 * 14 13 12 16 16 C 1.53007 * 110.41058 * 201.73601 * 14 13 12 17 17 C 1.50703 * 109.46635 * 293.54215 * 16 14 13 18 18 C 1.34494 * 125.77820 * 90.00614 * 17 16 14 19 19 C 1.41406 * 106.85048 * 180.27874 * 18 17 16 20 20 C 1.34655 * 106.83034 * 359.57184 * 19 18 17 21 21 Cl 1.73595 * 125.80063 * 180.13742 * 20 19 18 22 22 O 1.34303 * 108.39664 * 0.42835 * 20 19 18 23 23 H 0.97006 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.32589 * 122.20534 * 11 9 7 25 25 H 1.09004 * 110.40622 * 0.03854 * 11 9 7 26 26 H 1.08998 * 110.40882 * 217.36630 * 12 11 9 27 27 H 1.08999 * 110.51355 * 94.97854 * 12 11 9 28 28 H 1.00903 * 110.99709 * 159.04123 * 13 12 11 29 29 H 1.09000 * 109.47379 * 173.54869 * 16 14 13 30 30 H 1.08998 * 109.47298 * 53.54114 * 16 14 13 31 31 H 1.08002 * 126.57032 * 0.02562 * 18 17 16 32 32 H 1.07997 * 126.58278 * 179.73217 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8912 -0.6499 0.8638 11 6 4.0468 -0.5678 -1.3053 12 6 4.8614 -1.6899 -1.9841 13 7 5.2505 -2.5950 -0.8722 14 6 4.0478 -2.6416 -0.0016 15 1 3.3051 -3.3239 -0.4152 16 6 4.4318 -3.0688 1.4166 17 6 4.9141 -4.4965 1.3978 18 6 6.1860 -4.8944 1.2163 19 6 6.1842 -6.3076 1.2653 20 6 4.9113 -6.6886 1.4834 21 17 4.3527 -8.3254 1.6332 22 8 4.1463 -5.5873 1.5591 23 1 -0.4851 0.8401 0.0004 24 1 4.6892 0.2836 -1.0807 25 1 3.2205 -0.2593 -1.9459 26 1 5.7476 -1.2777 -2.4666 27 1 4.2470 -2.2221 -2.7103 28 1 5.4822 -3.5141 -1.2183 29 1 3.5620 -2.9878 2.0685 30 1 5.2262 -2.4218 1.7884 31 1 7.0434 -4.2569 1.0589 32 1 7.0400 -6.9566 1.1522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308073.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:36 Heat of formation + Delta-G solvation = 11.132602 kcal Electronic energy + Delta-G solvation = -16693.059369 eV Core-core repulsion = 13874.107552 eV Total energy + Delta-G solvation = -2818.951818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.52592 -38.10790 -36.97549 -33.24834 -32.69982 -32.08867 -29.88498 -28.19993 -25.59177 -23.37519 -21.85287 -20.93444 -20.15063 -19.13974 -17.57230 -16.82406 -16.26092 -15.52489 -14.87912 -14.33651 -13.95305 -13.86761 -13.32442 -12.90558 -12.79250 -12.41677 -12.22106 -11.97921 -11.55911 -11.48033 -11.30505 -11.00525 -10.72394 -10.54011 -10.21152 -9.87509 -9.85720 -9.61971 -9.03604 -8.60959 -8.28093 -8.01501 -6.11663 -4.11921 1.25294 1.65123 2.61684 3.26329 3.35907 3.38003 3.56769 4.38381 4.79056 4.96303 4.99184 5.18129 5.53546 5.62889 5.67446 5.74497 5.85505 5.88272 5.95829 6.07036 6.20713 6.34112 6.40818 6.54961 6.69064 6.77417 6.97301 7.10085 7.24565 7.37989 7.75491 7.82687 8.46679 8.91093 9.50078 11.01114 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.005298 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.001274 B = 5284.131600 C = 5762.482092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.039 0.961 11 C -0.133 4.133 12 C 0.044 3.956 13 N -0.667 5.667 14 C 0.083 3.917 15 H 0.052 0.948 16 C -0.028 4.028 17 C 0.032 3.968 18 C -0.208 4.208 19 C -0.173 4.173 20 C 0.006 3.994 21 Cl 0.011 6.989 22 O -0.168 6.168 23 H 0.264 0.736 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.323 0.677 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.280 -10.215 1.379 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.057 0.943 11 C -0.172 4.172 12 C -0.086 4.086 13 N -0.295 5.295 14 C -0.026 4.026 15 H 0.070 0.930 16 C -0.065 4.065 17 C -0.018 4.018 18 C -0.227 4.227 19 C -0.193 4.193 20 C -0.070 4.070 21 Cl 0.039 6.961 22 O -0.066 6.066 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.137 0.863 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.176 0.824 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.160 -9.761 1.841 15.701 hybrid contribution -0.252 0.015 -0.657 0.704 sum 11.907 -9.746 1.184 15.433 Atomic orbital electron populations 1.69903 1.06325 1.27016 1.50458 1.24971 0.94626 0.99017 0.94285 0.86919 0.80359 0.83659 0.78573 1.20236 1.21877 1.18675 1.21040 0.88396 0.94524 1.51374 0.90851 1.19879 0.96408 0.89928 0.93624 0.94250 1.22803 0.98241 0.96612 0.99516 1.22771 0.97870 0.95021 0.92913 1.63678 1.35028 1.13825 1.16970 1.22492 0.89895 0.99523 0.90690 0.93000 1.20384 1.02917 0.84142 0.99104 1.22999 0.89383 0.87911 1.01543 1.21549 0.97754 0.93842 1.09559 1.21494 0.95143 0.95904 1.06773 1.22307 0.89248 0.82598 1.12844 1.98401 1.91187 1.09718 1.96754 1.83995 1.38449 1.13325 1.70789 0.92611 0.93449 0.91113 0.91583 0.94718 0.86275 0.88897 0.88034 0.82424 0.82855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.13 16 2 C 0.07 2.04 5.36 -17.82 -0.10 1.94 16 3 Si 0.88 21.03 24.95 -169.99 -4.24 16.79 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.26 -6.01 6.48 56.52 0.37 -5.64 16 7 C -0.52 -13.85 8.91 -34.44 -0.31 -14.16 16 8 H 0.07 2.16 7.80 -52.48 -0.41 1.76 16 9 C 0.02 0.47 2.05 -90.39 -0.19 0.28 16 10 H 0.04 0.90 6.80 -51.92 -0.35 0.54 16 11 C -0.13 -2.75 4.69 -25.35 -0.12 -2.87 16 12 C 0.04 0.75 7.47 -2.18 -0.02 0.74 16 13 N -0.67 -11.13 7.08 -102.75 -0.73 -11.85 16 14 C 0.08 1.58 2.67 -66.07 -0.18 1.41 16 15 H 0.05 1.09 7.70 -51.93 -0.40 0.69 16 16 C -0.03 -0.46 5.36 -27.88 -0.15 -0.61 16 17 C 0.03 0.50 6.30 -35.63 -0.22 0.28 16 18 C -0.21 -2.80 10.73 -39.70 -0.43 -3.22 16 19 C -0.17 -2.18 10.88 -39.65 -0.43 -2.61 16 20 C 0.01 0.08 7.93 29.46 0.23 0.32 16 21 Cl 0.01 0.13 29.30 -51.86 -1.52 -1.39 16 22 O -0.17 -2.79 10.65 5.52 0.06 -2.73 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.05 0.94 7.63 -51.93 -0.40 0.54 16 25 H 0.07 1.57 6.75 -51.93 -0.35 1.22 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.32 4.90 8.77 -39.29 -0.34 4.55 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 281.44 15.07 4.24 4.24 Total: -1.00 -28.69 281.44 -7.27 -35.96 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -3.96 Total: 3.64 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.90 Total: -18.51 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.05 Total: -37.99 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: 0.06 Total: -2.73 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.24 Total: 16.79 kcal Atomic # 17 Polarization: 0.13 SS G_CDS: -1.52 Total: -1.39 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.69 -7.27 -35.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308073.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.090 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds