Wall clock time and date at job start Mon Mar 30 2020 06:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48493 * 109.47384 * 270.00106 * 3 2 1 5 5 H 1.48504 * 109.47085 * 30.00181 * 3 2 1 6 6 H 1.48508 * 109.47277 * 149.99915 * 3 2 1 7 7 C 1.37869 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99813 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00485 * 179.97438 * 7 2 1 10 10 H 1.09009 * 110.36796 * 57.81487 * 9 7 2 11 11 C 1.54260 * 110.32374 * 295.63821 * 9 7 2 12 12 C 1.54383 * 105.05657 * 241.10217 * 11 9 7 13 13 N 1.48557 * 104.59308 * 336.14035 * 12 11 9 14 14 C 1.48554 * 104.22123 * 39.48997 * 13 12 11 15 15 H 1.09000 * 110.41851 * 79.41101 * 14 13 12 16 16 C 1.53007 * 110.41058 * 201.73601 * 14 13 12 17 17 C 1.50703 * 109.46635 * 293.54215 * 16 14 13 18 18 C 1.34494 * 125.77820 * 90.00614 * 17 16 14 19 19 C 1.41406 * 106.85048 * 180.27874 * 18 17 16 20 20 C 1.34655 * 106.83034 * 359.57184 * 19 18 17 21 21 Cl 1.73595 * 125.80063 * 180.13742 * 20 19 18 22 22 O 1.34303 * 108.39664 * 0.42835 * 20 19 18 23 23 H 0.97006 * 120.00323 * 359.97438 * 1 2 3 24 24 H 1.08997 * 110.32589 * 122.20534 * 11 9 7 25 25 H 1.09004 * 110.40622 * 0.03854 * 11 9 7 26 26 H 1.08998 * 110.40882 * 217.36630 * 12 11 9 27 27 H 1.08999 * 110.51355 * 94.97854 * 12 11 9 28 28 H 1.00903 * 110.99709 * 159.04123 * 13 12 11 29 29 H 1.09000 * 109.47379 * 173.54869 * 16 14 13 30 30 H 1.08998 * 109.47298 * 53.54114 * 16 14 13 31 31 H 1.08002 * 126.57032 * 0.02562 * 18 17 16 32 32 H 1.07997 * 126.58278 * 179.73217 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8912 -0.6499 0.8638 11 6 4.0468 -0.5678 -1.3053 12 6 4.8614 -1.6899 -1.9841 13 7 5.2505 -2.5950 -0.8722 14 6 4.0478 -2.6416 -0.0016 15 1 3.3051 -3.3239 -0.4152 16 6 4.4318 -3.0688 1.4166 17 6 4.9141 -4.4965 1.3978 18 6 6.1860 -4.8944 1.2163 19 6 6.1842 -6.3076 1.2653 20 6 4.9113 -6.6886 1.4834 21 17 4.3527 -8.3254 1.6332 22 8 4.1463 -5.5873 1.5591 23 1 -0.4851 0.8401 0.0004 24 1 4.6892 0.2836 -1.0807 25 1 3.2205 -0.2593 -1.9459 26 1 5.7476 -1.2777 -2.4666 27 1 4.2470 -2.2221 -2.7103 28 1 5.4822 -3.5141 -1.2183 29 1 3.5620 -2.9878 2.0685 30 1 5.2262 -2.4218 1.7884 31 1 7.0434 -4.2569 1.0589 32 1 7.0400 -6.9566 1.1522 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308073.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:36 Heat of formation + Delta-G solvation = -8.139193 kcal Electronic energy + Delta-G solvation = -16693.895057 eV Core-core repulsion = 13874.107552 eV Total energy + Delta-G solvation = -2819.787506 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.64860 -39.65526 -37.96860 -34.85644 -34.30414 -33.33845 -31.66431 -29.50756 -27.18594 -25.08663 -22.94390 -22.33144 -21.43171 -20.80056 -18.97350 -18.48855 -17.56041 -17.08841 -16.27395 -15.83534 -15.66968 -15.28570 -14.73305 -14.34029 -13.99226 -13.82910 -13.48980 -13.31114 -13.15475 -12.85500 -12.53757 -12.47280 -12.35838 -12.27691 -11.84366 -11.67145 -11.42729 -10.98162 -10.89470 -10.73015 -9.57257 -9.26213 -8.28509 -6.33186 0.23209 0.53678 1.36531 1.39419 1.49898 1.57350 2.36142 2.45139 3.06399 3.39023 3.75598 4.00746 4.09141 4.16313 4.35391 4.37945 4.52887 4.60384 4.69694 4.77233 4.91998 4.96547 5.00657 5.11625 5.24460 5.29168 5.49459 5.54785 5.60457 5.86640 6.03231 6.30925 6.50761 6.73521 7.32493 8.88235 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032213 B = 0.005298 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.001274 B = 5284.131600 C = 5762.482092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.295 1.295 6 H -0.239 1.239 7 C -0.516 4.516 8 H 0.026 0.974 9 C 0.015 3.985 10 H 0.042 0.958 11 C -0.136 4.136 12 C 0.047 3.953 13 N -0.648 5.648 14 C 0.092 3.908 15 H 0.019 0.981 16 C -0.020 4.020 17 C 0.004 3.996 18 C -0.187 4.187 19 C -0.162 4.162 20 C -0.011 4.011 21 Cl 0.024 6.976 22 O -0.198 6.198 23 H 0.265 0.735 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.031 0.969 28 H 0.337 0.663 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.181 0.819 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.862 -10.085 1.065 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.162 1.162 7 C -0.554 4.554 8 H 0.044 0.956 9 C -0.004 4.004 10 H 0.060 0.940 11 C -0.174 4.174 12 C -0.082 4.082 13 N -0.277 5.277 14 C -0.018 4.018 15 H 0.037 0.963 16 C -0.058 4.058 17 C -0.046 4.046 18 C -0.206 4.206 19 C -0.182 4.182 20 C -0.087 4.087 21 Cl 0.053 6.947 22 O -0.098 6.098 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.118 0.882 27 H 0.050 0.950 28 H 0.152 0.848 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.198 0.802 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 15.774 -9.659 1.520 18.558 hybrid contribution -1.425 -0.182 -0.556 1.540 sum 14.349 -9.840 0.964 17.426 Atomic orbital electron populations 1.70068 1.08428 1.28044 1.52716 1.25872 0.95328 1.03122 0.94003 0.85869 0.79720 0.78428 0.79349 1.18898 1.22225 1.16185 1.21294 0.91201 0.92649 1.50227 0.95602 1.19833 0.93143 0.92562 0.94857 0.94015 1.22706 0.98250 0.98311 0.98125 1.22799 0.98721 0.93955 0.92703 1.63681 1.32884 1.14660 1.16485 1.22219 0.90169 0.96730 0.92714 0.96270 1.20184 1.02737 0.85872 0.96989 1.22829 0.90253 0.87253 1.04263 1.21831 0.97166 0.94481 1.07134 1.21893 0.95332 0.95911 1.05039 1.22771 0.89887 0.82761 1.13233 1.98403 1.91198 1.08429 1.96701 1.83950 1.39826 1.14329 1.71651 0.92614 0.91753 0.93351 0.88195 0.95018 0.84774 0.91025 0.86121 0.80177 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.40 13.96 21.44 0.30 -59.11 16 2 C 0.01 0.78 5.36 84.65 0.45 1.24 16 3 Si 0.94 43.29 24.95 68.60 1.71 45.00 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 6 H -0.24 -9.98 6.48 99.48 0.65 -9.33 16 7 C -0.52 -28.86 8.91 25.60 0.23 -28.64 16 8 H 0.03 1.64 7.80 -2.91 -0.02 1.62 16 9 C 0.02 0.68 2.05 -10.65 -0.02 0.66 16 10 H 0.04 1.83 6.80 -2.38 -0.02 1.82 16 11 C -0.14 -5.32 4.69 31.49 0.15 -5.17 16 12 C 0.05 1.50 7.47 86.45 0.65 2.15 16 13 N -0.65 -19.86 7.08 -479.00 -3.39 -23.26 16 14 C 0.09 3.46 2.67 45.06 0.12 3.58 16 15 H 0.02 0.84 7.70 -2.39 -0.02 0.82 16 16 C -0.02 -0.67 5.36 29.85 0.16 -0.51 16 17 C 0.00 0.11 6.30 24.83 0.16 0.27 16 18 C -0.19 -4.45 10.73 22.19 0.24 -4.22 16 19 C -0.16 -3.58 10.88 22.23 0.24 -3.34 16 20 C -0.01 -0.30 7.93 67.00 0.53 0.23 16 21 Cl 0.02 0.55 29.30 -2.72 -0.08 0.47 16 22 O -0.20 -6.59 10.65 -3.17 -0.03 -6.63 16 23 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 24 H 0.06 2.31 7.63 -2.39 -0.02 2.29 16 25 H 0.05 2.10 6.75 -2.39 -0.02 2.09 16 26 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.34 9.17 8.77 -89.69 -0.79 8.39 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -64.54 281.44 1.69 -62.85 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.29 Total: 14.42 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 2.90 Total: -33.75 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -3.09 Total: -82.36 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.03 Total: -6.63 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.71 Total: 45.00 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -0.08 Total: 0.47 kcal Total: -64.54 1.69 -62.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308073.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.711 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds