Wall clock time and date at job start Mon Mar 30 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47127 * 266.23689 * 3 2 1 5 5 H 1.48503 * 109.46678 * 26.23215 * 3 2 1 6 6 H 1.48490 * 109.47521 * 146.23340 * 3 2 1 7 7 C 1.37880 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99899 * 6.08004 * 7 2 1 9 9 C 1.50709 * 120.00022 * 186.07704 * 7 2 1 10 10 H 1.08998 * 110.36437 * 333.08513 * 9 7 2 11 11 C 1.54266 * 110.31908 * 95.26036 * 9 7 2 12 12 C 1.54377 * 105.05746 * 118.89690 * 11 9 7 13 13 N 1.48564 * 104.59592 * 23.85293 * 12 11 9 14 14 C 1.48565 * 104.21960 * 320.51469 * 13 12 11 15 15 H 1.08995 * 110.40791 * 280.70505 * 14 13 12 16 16 C 1.53001 * 110.40835 * 158.26457 * 14 13 12 17 17 C 1.50696 * 109.47331 * 69.82544 * 16 14 13 18 18 C 1.34494 * 125.77560 * 89.99865 * 17 16 14 19 19 C 1.41403 * 106.84886 * 179.97438 * 18 17 16 20 20 C 1.34645 * 106.83553 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 125.80835 * 180.02562 * 20 19 18 22 22 O 1.34314 * 108.39602 * 359.73120 * 20 19 18 23 23 H 0.97001 * 120.00259 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.32377 * 237.79192 * 11 9 7 25 25 H 1.09000 * 110.32492 * 359.89747 * 11 9 7 26 26 H 1.08996 * 110.41378 * 142.63043 * 12 11 9 27 27 H 1.08997 * 110.41444 * 264.95549 * 12 11 9 28 28 H 1.00898 * 110.99789 * 200.96006 * 13 12 11 29 29 H 1.09006 * 109.46768 * 189.83027 * 16 14 13 30 30 H 1.09001 * 109.47066 * 309.82390 * 16 14 13 31 31 H 1.07993 * 126.57495 * 0.02562 * 18 17 16 32 32 H 1.08000 * 126.58277 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5763 2.0005 -1.3971 5 1 1.4090 2.6743 0.6189 6 1 3.5046 1.4645 0.7781 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1268 -0.0981 9 6 3.5053 -1.1977 0.1387 10 1 3.9231 -0.2644 -0.2387 11 6 3.9069 -1.4070 1.6134 12 6 4.7210 -2.7186 1.6250 13 7 5.2388 -2.8502 0.2387 14 6 4.1103 -2.4004 -0.6165 15 1 3.3716 -3.1951 -0.7200 16 6 4.6231 -1.9645 -1.9906 17 6 5.0961 -3.1729 -2.7568 18 6 4.3418 -3.9325 -3.5710 19 6 5.1825 -4.9504 -4.0773 20 6 6.4015 -4.7520 -3.5411 21 17 7.8101 -5.7236 -3.8333 22 8 6.3442 -3.6706 -2.7465 23 1 -0.4850 0.8400 -0.0004 24 1 4.5221 -0.5765 1.9597 25 1 3.0187 -1.5053 2.2374 26 1 5.5460 -2.6478 2.3337 27 1 4.0782 -3.5629 1.8743 28 1 5.4880 -3.8065 0.0351 29 1 3.8181 -1.4774 -2.5410 30 1 5.4511 -1.2670 -1.8649 31 1 3.2949 -3.7914 -3.7957 32 1 4.9008 -5.7367 -4.7620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260308081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:38 Heat of formation + Delta-G solvation = 6.705272 kcal Electronic energy + Delta-G solvation = -16700.201356 eV Core-core repulsion = 13881.057554 eV Total energy + Delta-G solvation = -2819.143801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.50194 -38.03230 -36.98080 -33.21130 -32.72601 -32.05080 -29.84780 -28.18428 -25.58350 -23.40665 -21.85135 -20.83675 -20.01123 -19.04488 -17.64149 -17.04846 -16.27854 -15.47995 -14.87537 -14.21324 -13.97353 -13.73645 -13.29878 -12.79884 -12.66748 -12.59585 -12.22851 -12.03683 -11.48240 -11.44652 -11.19638 -11.00663 -10.81230 -10.50479 -10.37341 -9.87381 -9.76745 -9.64648 -9.04334 -8.59010 -8.24141 -7.99360 -6.14954 -4.14446 1.24780 1.66506 2.63015 3.24618 3.34399 3.37039 3.58144 4.36645 4.80186 4.99736 5.02792 5.14713 5.56161 5.66875 5.68822 5.74068 5.89085 5.90490 6.01378 6.12122 6.25990 6.35562 6.45101 6.52132 6.75831 6.81529 7.02777 7.12463 7.27834 7.33250 7.75947 7.86524 8.45487 8.88931 9.47896 10.97847 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.005394 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.380874 B = 5189.373681 C = 5568.142212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.041 0.959 11 C -0.125 4.125 12 C 0.041 3.959 13 N -0.668 5.668 14 C 0.079 3.921 15 H 0.053 0.947 16 C -0.030 4.030 17 C 0.036 3.964 18 C -0.217 4.217 19 C -0.170 4.170 20 C 0.004 3.996 21 Cl 0.010 6.990 22 O -0.162 6.162 23 H 0.265 0.735 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.321 0.679 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -7.953 -5.749 15.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.060 0.940 11 C -0.163 4.163 12 C -0.089 4.089 13 N -0.296 5.296 14 C -0.031 4.031 15 H 0.071 0.929 16 C -0.067 4.067 17 C -0.015 4.015 18 C -0.237 4.237 19 C -0.190 4.190 20 C -0.072 4.072 21 Cl 0.038 6.962 22 O -0.060 6.060 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.091 -7.177 -5.634 15.147 hybrid contribution -0.188 -0.183 -0.069 0.272 sum 11.903 -7.360 -5.703 15.112 Atomic orbital electron populations 1.69904 1.06352 1.27106 1.50130 1.25036 0.94641 0.98966 0.94187 0.86896 0.80392 0.83713 0.78896 1.20026 1.21560 1.18786 1.21003 0.88843 0.94573 1.50680 0.90912 1.19862 0.96252 0.93094 0.90609 0.94043 1.22703 0.98237 0.94796 1.00581 1.22815 0.97155 0.98323 0.90583 1.63689 1.36441 1.26013 1.03459 1.22648 0.90276 0.99262 0.90868 0.92866 1.20404 1.01189 0.90557 0.94593 1.22979 0.80220 0.98572 0.99686 1.21632 1.01682 0.97569 1.02776 1.21478 0.90845 1.02430 1.04289 1.22281 0.90822 0.92428 1.01700 1.98397 1.39401 1.64492 1.93865 1.84004 1.32337 1.35372 1.54270 0.92562 0.93479 0.91129 0.91739 0.94947 0.86504 0.87290 0.89609 0.82453 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 20.60 27.07 -169.99 -4.60 16.00 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.01 6.75 56.52 0.38 -5.63 16 7 C -0.51 -13.44 8.63 -34.43 -0.30 -13.74 16 8 H 0.07 2.09 7.90 -52.49 -0.41 1.67 16 9 C 0.02 0.47 2.16 -90.39 -0.20 0.28 16 10 H 0.04 0.93 5.12 -51.93 -0.27 0.67 16 11 C -0.12 -2.55 6.64 -25.35 -0.17 -2.72 16 12 C 0.04 0.71 7.47 -2.18 -0.02 0.70 16 13 N -0.67 -11.84 7.15 -102.75 -0.74 -12.57 16 14 C 0.08 1.51 2.64 -66.07 -0.17 1.34 16 15 H 0.05 1.08 7.75 -51.93 -0.40 0.68 16 16 C -0.03 -0.51 5.34 -27.88 -0.15 -0.66 16 17 C 0.04 0.58 6.43 -35.63 -0.23 0.35 16 18 C -0.22 -3.17 10.81 -39.70 -0.43 -3.60 16 19 C -0.17 -2.25 10.88 -39.65 -0.43 -2.68 16 20 C 0.00 0.05 7.93 29.46 0.23 0.28 16 21 Cl 0.01 0.11 29.30 -51.86 -1.52 -1.41 16 22 O -0.16 -2.60 10.66 5.50 0.06 -2.54 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.52 7.70 -51.93 -0.40 1.12 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.32 5.28 8.91 -39.29 -0.35 4.93 16 29 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 286.01 15.07 4.31 4.31 Total: -1.00 -28.04 286.01 -7.62 -35.66 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.95 Total: 4.59 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.95 Total: -18.54 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.04 Total: -38.07 kcal Atomic # 8 Polarization: -2.60 SS G_CDS: 0.06 Total: -2.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.60 Total: 16.00 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.52 Total: -1.41 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.04 -7.62 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.361 kcal (2) G-P(sol) polarization free energy of solvation -28.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds