Wall clock time and date at job start Mon Mar 30 2020 06:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47127 * 266.23689 * 3 2 1 5 5 H 1.48503 * 109.46678 * 26.23215 * 3 2 1 6 6 H 1.48490 * 109.47521 * 146.23340 * 3 2 1 7 7 C 1.37880 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99899 * 6.08004 * 7 2 1 9 9 C 1.50709 * 120.00022 * 186.07704 * 7 2 1 10 10 H 1.08998 * 110.36437 * 333.08513 * 9 7 2 11 11 C 1.54266 * 110.31908 * 95.26036 * 9 7 2 12 12 C 1.54377 * 105.05746 * 118.89690 * 11 9 7 13 13 N 1.48564 * 104.59592 * 23.85293 * 12 11 9 14 14 C 1.48565 * 104.21960 * 320.51469 * 13 12 11 15 15 H 1.08995 * 110.40791 * 280.70505 * 14 13 12 16 16 C 1.53001 * 110.40835 * 158.26457 * 14 13 12 17 17 C 1.50696 * 109.47331 * 69.82544 * 16 14 13 18 18 C 1.34494 * 125.77560 * 89.99865 * 17 16 14 19 19 C 1.41403 * 106.84886 * 179.97438 * 18 17 16 20 20 C 1.34645 * 106.83553 * 0.02562 * 19 18 17 21 21 Cl 1.73597 * 125.80835 * 180.02562 * 20 19 18 22 22 O 1.34314 * 108.39602 * 359.73120 * 20 19 18 23 23 H 0.97001 * 120.00259 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.32377 * 237.79192 * 11 9 7 25 25 H 1.09000 * 110.32492 * 359.89747 * 11 9 7 26 26 H 1.08996 * 110.41378 * 142.63043 * 12 11 9 27 27 H 1.08997 * 110.41444 * 264.95549 * 12 11 9 28 28 H 1.00898 * 110.99789 * 200.96006 * 13 12 11 29 29 H 1.09006 * 109.46768 * 189.83027 * 16 14 13 30 30 H 1.09001 * 109.47066 * 309.82390 * 16 14 13 31 31 H 1.07993 * 126.57495 * 0.02562 * 18 17 16 32 32 H 1.08000 * 126.58277 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5763 2.0005 -1.3971 5 1 1.4090 2.6743 0.6189 6 1 3.5046 1.4645 0.7781 7 6 2.0045 -1.1941 0.0005 8 1 1.4691 -2.1268 -0.0981 9 6 3.5053 -1.1977 0.1387 10 1 3.9231 -0.2644 -0.2387 11 6 3.9069 -1.4070 1.6134 12 6 4.7210 -2.7186 1.6250 13 7 5.2388 -2.8502 0.2387 14 6 4.1103 -2.4004 -0.6165 15 1 3.3716 -3.1951 -0.7200 16 6 4.6231 -1.9645 -1.9906 17 6 5.0961 -3.1729 -2.7568 18 6 4.3418 -3.9325 -3.5710 19 6 5.1825 -4.9504 -4.0773 20 6 6.4015 -4.7520 -3.5411 21 17 7.8101 -5.7236 -3.8333 22 8 6.3442 -3.6706 -2.7465 23 1 -0.4850 0.8400 -0.0004 24 1 4.5221 -0.5765 1.9597 25 1 3.0187 -1.5053 2.2374 26 1 5.5460 -2.6478 2.3337 27 1 4.0782 -3.5629 1.8743 28 1 5.4880 -3.8065 0.0351 29 1 3.8181 -1.4774 -2.5410 30 1 5.4511 -1.2670 -1.8649 31 1 3.2949 -3.7914 -3.7957 32 1 4.9008 -5.7367 -4.7620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:38 Heat of formation + Delta-G solvation = -10.926175 kcal Electronic energy + Delta-G solvation = -16700.965913 eV Core-core repulsion = 13881.057554 eV Total energy + Delta-G solvation = -2819.908358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.64016 -39.59841 -37.96303 -34.76512 -34.38152 -33.31993 -31.62544 -29.52567 -27.18784 -25.09292 -22.98389 -22.19687 -21.34142 -20.73081 -19.23249 -18.53467 -17.58001 -17.00221 -16.19849 -15.89511 -15.59078 -15.21829 -14.57240 -14.35050 -13.95161 -13.88556 -13.73868 -13.28427 -13.02682 -12.84631 -12.61700 -12.41331 -12.34057 -12.13949 -12.02926 -11.72896 -11.40355 -10.93731 -10.92490 -10.65393 -9.55244 -9.28861 -8.26244 -6.29170 0.20985 0.53184 1.38564 1.41447 1.51265 1.51627 2.38247 2.42790 3.08929 3.37660 3.78327 3.95820 4.08076 4.20487 4.33273 4.37556 4.56979 4.62821 4.71133 4.76583 4.87780 4.93814 4.97078 5.13195 5.25229 5.33941 5.42144 5.50433 5.63612 5.89788 6.01378 6.35675 6.47492 6.76785 7.36114 8.90160 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.032125 B = 0.005394 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.380874 B = 5189.373681 C = 5568.142212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.018 3.982 3 Si 0.935 3.065 4 H -0.262 1.262 5 H -0.292 1.292 6 H -0.247 1.247 7 C -0.507 4.507 8 H 0.032 0.968 9 C 0.015 3.985 10 H 0.043 0.957 11 C -0.127 4.127 12 C 0.046 3.954 13 N -0.661 5.661 14 C 0.087 3.913 15 H 0.034 0.966 16 C -0.023 4.023 17 C 0.017 3.983 18 C -0.217 4.217 19 C -0.167 4.167 20 C -0.003 4.003 21 Cl 0.032 6.968 22 O -0.175 6.175 23 H 0.265 0.735 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.034 0.966 28 H 0.332 0.668 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.164 0.836 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.760 -8.219 -6.194 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.171 1.171 7 C -0.546 4.546 8 H 0.050 0.950 9 C -0.004 4.004 10 H 0.061 0.939 11 C -0.165 4.165 12 C -0.083 4.083 13 N -0.290 5.290 14 C -0.023 4.023 15 H 0.052 0.948 16 C -0.061 4.061 17 C -0.033 4.033 18 C -0.236 4.236 19 C -0.187 4.187 20 C -0.079 4.079 21 Cl 0.060 6.940 22 O -0.074 6.074 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.052 0.948 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.182 0.818 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 14.402 -7.466 -6.082 17.325 hybrid contribution -0.898 -0.244 0.053 0.932 sum 13.504 -7.710 -6.029 16.677 Atomic orbital electron populations 1.70049 1.08249 1.28017 1.52458 1.25837 0.95266 1.02691 0.94112 0.85905 0.79452 0.79033 0.79672 1.18690 1.21865 1.17092 1.21178 0.91107 0.92899 1.49370 0.94962 1.19847 0.93511 0.94572 0.92491 0.93897 1.22609 0.98195 0.96962 0.98775 1.22811 0.97703 0.96663 0.91131 1.63701 1.35279 1.26852 1.03143 1.22399 0.90398 0.97378 0.92079 0.94768 1.20204 1.01154 0.91309 0.93436 1.22698 0.80760 0.98948 1.00880 1.21868 1.02107 0.97541 1.02133 1.21788 0.90178 1.02485 1.04217 1.22648 0.92018 0.92017 1.01185 1.98407 1.38268 1.63640 1.93657 1.83964 1.32249 1.36172 1.54976 0.92589 0.92400 0.93008 0.89026 0.94789 0.85322 0.87732 0.89191 0.81838 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 13.96 21.45 0.30 -56.88 16 2 C 0.02 1.02 5.47 84.66 0.46 1.48 16 3 Si 0.94 42.30 27.07 68.60 1.86 44.15 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.25 -10.45 6.75 99.48 0.67 -9.78 16 7 C -0.51 -27.25 8.63 25.60 0.22 -27.03 16 8 H 0.03 1.94 7.90 -2.91 -0.02 1.92 16 9 C 0.02 0.67 2.16 -10.64 -0.02 0.65 16 10 H 0.04 1.87 5.12 -2.39 -0.01 1.86 16 11 C -0.13 -5.04 6.64 31.49 0.21 -4.83 16 12 C 0.05 1.53 7.47 86.45 0.65 2.17 16 13 N -0.66 -22.13 7.15 -479.00 -3.43 -25.55 16 14 C 0.09 3.29 2.64 45.06 0.12 3.41 16 15 H 0.03 1.41 7.75 -2.39 -0.02 1.39 16 16 C -0.02 -0.78 5.34 29.85 0.16 -0.62 16 17 C 0.02 0.54 6.43 24.83 0.16 0.70 16 18 C -0.22 -6.04 10.81 22.19 0.24 -5.80 16 19 C -0.17 -4.02 10.88 22.23 0.24 -3.78 16 20 C 0.00 -0.08 7.93 67.00 0.53 0.45 16 21 Cl 0.03 0.65 29.30 -2.72 -0.08 0.58 16 22 O -0.18 -5.30 10.66 -3.25 -0.03 -5.34 16 23 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.05 2.23 7.70 -2.39 -0.02 2.21 16 26 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.33 10.21 8.91 -89.70 -0.80 9.41 16 29 H 0.10 3.50 8.14 -2.38 -0.02 3.49 16 30 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -60.39 286.01 1.88 -58.51 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.30 Total: 17.74 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 2.97 Total: -33.21 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -3.13 Total: -82.43 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.03 Total: -5.34 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.86 Total: 44.15 kcal Atomic # 17 Polarization: 0.65 SS G_CDS: -0.08 Total: 0.58 kcal Total: -60.39 1.88 -58.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.581 kcal (2) G-P(sol) polarization free energy of solvation -60.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds