Wall clock time and date at job start Mon Mar 30 2020 06:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99482 * 2 1 4 4 H 1.48503 * 109.47046 * 269.99795 * 3 2 1 5 5 H 1.48494 * 109.47487 * 29.99772 * 3 2 1 6 6 H 1.48504 * 109.47202 * 150.00304 * 3 2 1 7 7 C 1.37876 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00150 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99773 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.27103 * 302.08788 * 9 7 2 11 11 C 1.54591 * 110.39240 * 64.23533 * 9 7 2 12 12 C 1.54942 * 102.91948 * 140.91757 * 11 9 7 13 13 N 1.48536 * 103.22418 * 322.58184 * 12 11 9 14 14 C 1.47900 * 105.82189 * 39.21141 * 13 12 11 15 15 H 1.08998 * 109.92062 * 94.21639 * 14 13 12 16 16 C 1.52997 * 109.91823 * 215.31551 * 14 13 12 17 17 C 1.50698 * 109.46801 * 293.54628 * 16 14 13 18 18 C 1.34490 * 125.78441 * 89.71765 * 17 16 14 19 19 C 1.41400 * 106.85610 * 179.90743 * 18 17 16 20 20 C 1.34653 * 106.83166 * 0.35136 * 19 18 17 21 21 Cl 1.73595 * 125.80387 * 179.80396 * 20 19 18 22 22 O 1.34311 * 108.39448 * 359.78159 * 20 19 18 23 23 H 0.96990 * 120.00301 * 359.97438 * 1 2 3 24 24 H 1.08990 * 110.72764 * 22.55688 * 11 9 7 25 25 H 1.08999 * 110.71949 * 259.27249 * 11 9 7 26 26 H 1.09004 * 110.66299 * 204.14962 * 12 11 9 27 27 H 1.09000 * 110.66998 * 81.01629 * 12 11 9 28 28 H 1.00895 * 111.00165 * 278.69127 * 13 12 11 29 29 H 1.09004 * 109.47361 * 53.54315 * 16 14 13 30 30 H 1.09000 * 109.47160 * 173.54305 * 16 14 13 31 31 H 1.08010 * 126.56416 * 0.03290 * 18 17 16 32 32 H 1.08000 * 126.58413 * 180.12765 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.5916 -2.5544 0.8666 11 6 0.4369 -2.6510 -1.3047 12 6 0.6014 -4.1541 -1.6427 13 7 2.0051 -4.4392 -1.2495 14 6 2.2348 -3.6841 0.0012 15 1 2.0472 -4.3256 0.8622 16 6 3.6741 -3.1667 0.0409 17 6 4.6241 -4.3321 0.1414 18 6 5.1650 -4.9974 -0.8948 19 6 5.9910 -6.0064 -0.3480 20 6 5.8991 -5.9022 0.9914 21 17 6.7144 -6.9092 2.1467 22 8 5.0699 -4.8863 1.2815 23 1 -0.4850 0.8399 0.0004 24 1 0.8565 -2.0296 -2.0957 25 1 -0.6118 -2.4062 -1.1358 26 1 0.4581 -4.3264 -2.7095 27 1 -0.0922 -4.7582 -1.0578 28 1 2.6486 -4.1491 -1.9705 29 1 3.8834 -2.6047 -0.8693 30 1 3.8029 -2.5171 0.9066 31 1 5.0015 -4.7976 -1.9436 32 1 6.5795 -6.7252 -0.8988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260308088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:39 Heat of formation + Delta-G solvation = -3.368308 kcal Electronic energy + Delta-G solvation = -16793.521880 eV Core-core repulsion = 13973.941255 eV Total energy + Delta-G solvation = -2819.580624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.57252 -39.77759 -37.92387 -34.71079 -34.26797 -33.32828 -30.79946 -29.38437 -26.57467 -25.72337 -22.92506 -22.24484 -21.49372 -20.91531 -18.86892 -17.79946 -17.35622 -16.67513 -16.49645 -15.96101 -15.56056 -15.08879 -14.53797 -14.29217 -13.80428 -13.77802 -13.29301 -13.17985 -13.01979 -12.87219 -12.70050 -12.36687 -12.29920 -12.05663 -11.88500 -11.55517 -11.33305 -10.86708 -10.65383 -10.48108 -9.36359 -9.18207 -8.11082 -6.19891 0.27186 0.62205 1.41970 1.44863 1.52618 1.65014 2.43977 2.51192 3.22100 3.52445 3.88551 4.05422 4.17864 4.31401 4.52454 4.61299 4.62062 4.67389 4.82297 4.92034 4.99938 5.02186 5.16024 5.27204 5.38506 5.55779 5.60688 5.70071 5.87990 6.03601 6.13896 6.31110 6.64290 6.92552 7.48950 8.98743 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.026256 B = 0.005641 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.183693 B = 4962.820439 C = 5617.368646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.084 0.916 9 C 0.020 3.980 10 H -0.007 1.007 11 C -0.116 4.116 12 C 0.044 3.956 13 N -0.660 5.660 14 C 0.093 3.907 15 H 0.053 0.947 16 C -0.023 4.023 17 C 0.012 3.988 18 C -0.198 4.198 19 C -0.162 4.162 20 C -0.012 4.012 21 Cl 0.025 6.975 22 O -0.194 6.194 23 H 0.257 0.743 24 H 0.041 0.959 25 H 0.033 0.967 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.338 0.662 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.175 0.825 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.993 -10.749 -2.541 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.101 0.899 9 C 0.000 4.000 10 H 0.011 0.989 11 C -0.156 4.156 12 C -0.086 4.086 13 N -0.288 5.288 14 C -0.017 4.017 15 H 0.071 0.929 16 C -0.061 4.061 17 C -0.038 4.038 18 C -0.217 4.217 19 C -0.182 4.182 20 C -0.088 4.088 21 Cl 0.053 6.947 22 O -0.093 6.093 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.192 0.808 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 10.745 -11.318 -1.839 15.714 hybrid contribution -0.033 1.974 0.178 1.982 sum 10.711 -9.344 -1.661 14.311 Atomic orbital electron populations 1.70120 1.07460 1.26982 1.51548 1.25766 0.95432 1.02376 0.95045 0.85720 0.78910 0.79879 0.78169 1.20126 1.21922 1.18851 1.21880 0.94170 0.90768 1.50073 0.89863 1.19850 0.93221 0.93324 0.93603 0.98857 1.22782 0.99046 0.95379 0.98361 1.23119 0.90770 0.94164 1.00535 1.63007 1.04176 1.56030 1.05582 1.22132 0.93458 0.92900 0.93243 0.92908 1.20577 0.90177 0.90579 1.04745 1.23005 0.99683 0.98776 0.82344 1.21759 1.01313 0.97846 1.00752 1.21825 1.03449 1.02416 0.90540 1.22681 1.00699 0.94219 0.91153 1.98394 1.74012 1.61861 1.60390 1.83914 1.50334 1.39038 1.36048 0.93414 0.94037 0.94805 0.89583 0.91488 0.84512 0.87298 0.90114 0.80755 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 12.63 21.45 0.27 -52.11 16 2 C 0.01 0.67 5.34 84.65 0.45 1.12 16 3 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.53 -26.66 7.51 25.60 0.19 -26.47 16 8 H 0.08 3.88 4.70 -2.92 -0.01 3.86 16 9 C 0.02 0.95 2.86 -10.66 -0.03 0.92 16 10 H -0.01 -0.38 8.14 -2.38 -0.02 -0.39 16 11 C -0.12 -5.12 5.75 31.80 0.18 -4.94 16 12 C 0.04 1.51 7.55 86.65 0.65 2.17 16 13 N -0.66 -22.24 7.12 -480.18 -3.42 -25.66 16 14 C 0.09 3.61 3.38 45.06 0.15 3.76 16 15 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.02 -0.82 3.58 29.85 0.11 -0.71 16 17 C 0.01 0.38 6.36 24.83 0.16 0.54 16 18 C -0.20 -5.23 10.60 22.19 0.24 -5.00 16 19 C -0.16 -3.96 10.88 22.23 0.24 -3.72 16 20 C -0.01 -0.35 7.93 67.00 0.53 0.19 16 21 Cl 0.02 0.57 29.30 -2.72 -0.08 0.49 16 22 O -0.19 -6.56 10.66 -3.28 -0.03 -6.60 16 23 H 0.26 14.09 8.31 -92.72 -0.77 13.31 16 24 H 0.04 1.91 7.86 -2.39 -0.02 1.89 16 25 H 0.03 1.63 8.12 -2.39 -0.02 1.61 16 26 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.34 10.18 8.17 -89.70 -0.73 9.45 16 29 H 0.11 3.64 7.18 -2.38 -0.02 3.62 16 30 H 0.08 3.09 6.92 -2.39 -0.02 3.08 16 31 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -57.96 282.26 2.05 -55.91 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.41 Total: 16.23 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 2.88 Total: -32.14 kcal Atomic # 7 Polarization: -74.62 SS G_CDS: -3.15 Total: -77.77 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.03 Total: -6.60 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Total: -57.96 2.05 -55.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260308088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.544 kcal (2) G-P(sol) polarization free energy of solvation -57.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds