Wall clock time and date at job start Mon Mar 30 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99998 * 2 1 4 4 H 1.48492 * 109.46844 * 269.99838 * 3 2 1 5 5 H 1.48499 * 109.47098 * 29.99681 * 3 2 1 6 6 H 1.48504 * 109.47174 * 149.99515 * 3 2 1 7 7 C 1.37875 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46872 * 179.97438 * 10 9 7 12 12 C 1.38184 * 120.00150 * 99.97940 * 11 10 9 13 13 C 1.38211 * 120.07582 * 179.76501 * 12 11 10 14 14 N 1.48016 * 119.95373 * 180.27597 * 13 12 11 15 15 O 1.21807 * 120.00084 * 0.23211 * 14 13 12 16 16 O 1.21804 * 120.00284 * 180.23407 * 14 13 12 17 17 C 1.38515 * 120.08534 * 0.51033 * 13 12 11 18 18 F 1.35104 * 119.99423 * 179.76430 * 17 13 12 19 19 C 1.38337 * 120.00519 * 359.49221 * 17 13 12 20 20 C 1.38707 * 119.92119 * 0.25231 * 19 17 13 21 21 O 1.35901 * 120.04237 * 179.97438 * 20 19 17 22 22 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46982 * 59.99795 * 9 7 2 24 24 H 1.09001 * 109.47531 * 299.99818 * 9 7 2 25 25 H 1.08998 * 109.46830 * 60.00360 * 10 9 7 26 26 H 1.08995 * 109.46928 * 299.99695 * 10 9 7 27 27 H 1.07993 * 119.95875 * 0.02562 * 12 11 10 28 28 H 1.08004 * 120.03947 * 180.23098 * 19 17 13 29 29 H 0.96695 * 114.00479 * 89.99432 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9671 0.0012 12 6 1.3255 -5.6696 -1.1772 13 6 0.6389 -6.8691 -1.1775 14 7 0.4677 -7.6222 -2.4401 15 8 0.9353 -7.1869 -3.4772 16 8 -0.1410 -8.6773 -2.4422 17 6 0.1067 -7.3648 0.0013 18 9 -0.5683 -8.5352 -0.0020 19 6 0.2711 -6.6645 1.1829 20 6 0.9646 -5.4633 1.1845 21 8 1.1271 -4.7730 2.3438 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 1.7362 -5.2828 -2.0981 28 1 -0.1405 -7.0524 2.1031 29 1 1.9273 -5.0083 2.8330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260332501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:52 Heat of formation + Delta-G solvation = -78.253996 kcal Electronic energy + Delta-G solvation = -18268.762065 eV Core-core repulsion = 14881.764684 eV Total energy + Delta-G solvation = -3386.997381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.36614 -42.07159 -40.16753 -36.92366 -36.47326 -34.35416 -32.32003 -31.31162 -29.22199 -26.16987 -25.32839 -23.23174 -22.40079 -20.82561 -19.03605 -18.84223 -18.73312 -17.59034 -17.11487 -16.68428 -16.22119 -15.87542 -14.88321 -14.73610 -14.50823 -14.24880 -13.25689 -12.94147 -12.53298 -12.44973 -12.11282 -11.53526 -11.43031 -11.14159 -11.08169 -11.02629 -10.94595 -10.67420 -10.09775 -9.89596 -9.57010 -9.28145 -8.73034 -8.46455 -6.10869 -4.15137 -0.26288 0.68580 1.23412 1.35209 2.94715 3.25278 3.32186 3.34059 3.40610 3.83306 4.21835 4.36103 4.49449 4.71313 5.05401 5.22042 5.25487 5.43378 5.57136 5.76483 6.01380 6.23772 6.34014 6.40691 6.73199 7.35895 7.50828 7.61906 7.67064 7.86091 8.24088 8.90997 9.49763 11.00125 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.005089 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.685962 B = 5500.579642 C = 6067.969775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.073 4.073 11 C -0.093 4.093 12 C -0.017 4.017 13 C -0.094 4.094 14 N 0.036 4.964 15 O -0.158 6.158 16 O -0.160 6.160 17 C 0.169 3.831 18 F -0.107 7.107 19 C -0.187 4.187 20 C 0.196 3.804 21 O -0.471 6.471 22 H 0.262 0.738 23 H 0.016 0.984 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.166 0.834 28 H 0.162 0.838 29 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -13.282 3.286 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.110 4.110 11 C -0.094 4.094 12 C -0.036 4.036 13 C -0.179 4.179 14 N 0.554 4.446 15 O -0.373 6.373 16 O -0.375 6.375 17 C 0.148 3.852 18 F -0.085 7.085 19 C -0.207 4.207 20 C 0.150 3.850 21 O -0.282 6.282 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.184 0.816 28 H 0.179 0.821 29 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.643 -12.588 3.746 13.397 hybrid contribution 0.517 0.341 -0.146 0.636 sum 3.160 -12.247 3.600 13.150 Atomic orbital electron populations 1.69959 1.06115 1.26856 1.50118 1.25016 0.94845 0.99351 0.95074 0.86568 0.79776 0.83308 0.78196 1.20570 1.21172 1.19829 1.21148 0.92998 0.90683 1.51546 0.92477 1.19125 0.93554 0.90122 0.97989 1.20862 0.98477 0.89304 1.02352 1.20899 0.99023 0.98648 0.90868 1.20862 0.92915 0.89338 1.00508 1.21219 1.13979 0.98838 0.83840 1.43324 0.98527 1.00471 1.02256 1.94548 1.50335 1.72110 1.20340 1.94575 1.39978 1.09941 1.92959 1.16939 0.93097 0.83328 0.91844 1.91646 1.76392 1.43419 1.97007 1.21412 1.05432 0.96059 0.97763 1.18306 0.91984 0.87498 0.87213 1.84905 1.47964 1.62892 1.32484 0.92816 0.96551 0.95466 0.90982 0.91232 0.81628 0.82058 0.73993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 7 C -0.53 -13.92 9.11 -34.44 -0.31 -14.24 15 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 15 9 C 0.03 0.69 4.95 -27.88 -0.14 0.55 15 10 C -0.07 -1.26 4.95 -27.88 -0.14 -1.40 15 11 C -0.09 -1.38 5.15 -104.46 -0.54 -1.92 15 12 C -0.02 -0.25 9.17 -39.61 -0.36 -0.61 15 13 C -0.09 -1.40 6.86 -79.86 -0.55 -1.94 15 14 N 0.04 0.59 4.45 34.01 0.15 0.74 15 15 O -0.16 -2.64 18.44 -29.46 -0.54 -3.18 15 16 O -0.16 -2.70 17.42 -29.46 -0.51 -3.22 15 17 C 0.17 2.29 7.25 -39.44 -0.29 2.01 15 18 F -0.11 -1.48 15.48 2.25 0.03 -1.45 15 19 C -0.19 -2.19 9.97 -39.37 -0.39 -2.59 15 20 C 0.20 2.58 6.67 -39.23 -0.26 2.32 15 21 O -0.47 -5.84 12.64 -19.43 -0.25 -6.08 15 22 H 0.26 7.24 8.31 -40.82 -0.34 6.91 15 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 24 H 0.03 0.70 8.05 -51.93 -0.42 0.28 15 25 H 0.07 1.15 7.85 -51.93 -0.41 0.74 15 26 H 0.07 1.15 8.00 -51.93 -0.42 0.73 15 27 H 0.17 2.25 7.58 -52.49 -0.40 1.85 15 28 H 0.16 1.45 8.06 -52.48 -0.42 1.03 15 29 H 0.40 2.66 9.06 45.56 0.41 3.07 15 LS Contribution 274.91 15.07 4.14 4.14 Total: -1.00 -31.33 274.91 -5.95 -37.28 By element: Atomic # 1 Polarization: -0.81 SS G_CDS: -1.61 Total: -2.42 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -3.08 Total: -16.29 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.89 Total: -24.57 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -1.30 Total: -12.48 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.45 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.33 -5.95 -37.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260332501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.975 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds