Wall clock time and date at job start Mon Mar 30 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 119.99998 * 2 1 4 4 H 1.48492 * 109.46844 * 269.99838 * 3 2 1 5 5 H 1.48499 * 109.47098 * 29.99681 * 3 2 1 6 6 H 1.48504 * 109.47174 * 149.99515 * 3 2 1 7 7 C 1.37875 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99559 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46872 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46872 * 179.97438 * 10 9 7 12 12 C 1.38184 * 120.00150 * 99.97940 * 11 10 9 13 13 C 1.38211 * 120.07582 * 179.76501 * 12 11 10 14 14 N 1.48016 * 119.95373 * 180.27597 * 13 12 11 15 15 O 1.21807 * 120.00084 * 0.23211 * 14 13 12 16 16 O 1.21804 * 120.00284 * 180.23407 * 14 13 12 17 17 C 1.38515 * 120.08534 * 0.51033 * 13 12 11 18 18 F 1.35104 * 119.99423 * 179.76430 * 17 13 12 19 19 C 1.38337 * 120.00519 * 359.49221 * 17 13 12 20 20 C 1.38707 * 119.92119 * 0.25231 * 19 17 13 21 21 O 1.35901 * 120.04237 * 179.97438 * 20 19 17 22 22 H 0.97001 * 119.99977 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46982 * 59.99795 * 9 7 2 24 24 H 1.09001 * 109.47531 * 299.99818 * 9 7 2 25 25 H 1.08998 * 109.46830 * 60.00360 * 10 9 7 26 26 H 1.08995 * 109.46928 * 299.99695 * 10 9 7 27 27 H 1.07993 * 119.95875 * 0.02562 * 12 11 10 28 28 H 1.08004 * 120.03947 * 180.23098 * 19 17 13 29 29 H 0.96695 * 114.00479 * 89.99432 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9671 0.0012 12 6 1.3255 -5.6696 -1.1772 13 6 0.6389 -6.8691 -1.1775 14 7 0.4677 -7.6222 -2.4401 15 8 0.9353 -7.1869 -3.4772 16 8 -0.1410 -8.6773 -2.4422 17 6 0.1067 -7.3648 0.0013 18 9 -0.5683 -8.5352 -0.0020 19 6 0.2711 -6.6645 1.1829 20 6 0.9646 -5.4633 1.1845 21 8 1.1271 -4.7730 2.3438 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 1.7362 -5.2828 -2.0981 28 1 -0.1405 -7.0524 2.1031 29 1 1.9273 -5.0083 2.8330 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260332501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:52 Heat of formation + Delta-G solvation = -97.994271 kcal Electronic energy + Delta-G solvation = -18269.618068 eV Core-core repulsion = 14881.764684 eV Total energy + Delta-G solvation = -3387.853384 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.46145 -43.31740 -41.26689 -37.97197 -37.73874 -36.02833 -34.05206 -32.40732 -30.79338 -27.45401 -26.94756 -24.39919 -23.87531 -22.30162 -20.11200 -20.06009 -19.94846 -18.83414 -18.53928 -18.19747 -17.49958 -16.98228 -16.53591 -15.88875 -15.75628 -15.36844 -14.74384 -14.47740 -14.07377 -13.77818 -13.42794 -13.03301 -12.84781 -12.81769 -12.52214 -12.39096 -12.37605 -12.04830 -11.75984 -11.67074 -11.21275 -10.60255 -10.54293 -9.98468 -8.19094 -6.30066 -1.44410 -0.38448 0.03847 0.16535 1.42885 1.43265 1.53862 1.86467 2.34824 2.42169 2.81183 3.13597 3.15746 3.39378 3.64497 3.99915 4.18322 4.28845 4.48427 4.60983 4.75964 4.84923 5.02193 5.11844 5.26798 5.51751 5.70920 5.85203 6.21381 6.37192 6.63237 6.88008 7.39824 8.92504 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.005089 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.685962 B = 5500.579642 C = 6067.969775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.034 3.966 10 C -0.059 4.059 11 C -0.109 4.109 12 C -0.013 4.013 13 C -0.108 4.108 14 N 0.036 4.964 15 O -0.171 6.171 16 O -0.174 6.174 17 C 0.173 3.827 18 F -0.107 7.107 19 C -0.169 4.169 20 C 0.212 3.788 21 O -0.483 6.483 22 H 0.262 0.738 23 H -0.016 1.016 24 H 0.001 0.999 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.169 0.831 28 H 0.196 0.804 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -13.496 4.552 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.182 1.182 7 C -0.576 4.576 8 H 0.087 0.913 9 C -0.004 4.004 10 C -0.096 4.096 11 C -0.111 4.111 12 C -0.032 4.032 13 C -0.193 4.193 14 N 0.551 4.449 15 O -0.385 6.385 16 O -0.387 6.387 17 C 0.152 3.848 18 F -0.085 7.085 19 C -0.189 4.189 20 C 0.165 3.835 21 O -0.299 6.299 22 H 0.071 0.929 23 H 0.002 0.998 24 H 0.019 0.981 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.186 0.814 28 H 0.213 0.787 29 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 3.816 -12.832 5.012 14.295 hybrid contribution 0.150 0.384 -0.456 0.615 sum 3.966 -12.448 4.556 13.836 Atomic orbital electron populations 1.70102 1.07917 1.27676 1.51817 1.25953 0.95633 1.03356 0.94904 0.85492 0.78848 0.78655 0.78327 1.20145 1.21289 1.18217 1.21684 0.93808 0.91896 1.50206 0.91345 1.18949 0.94097 0.92225 0.95082 1.20541 0.97242 0.88157 1.03646 1.20664 1.00420 0.98144 0.91877 1.20846 0.92603 0.89144 1.00621 1.21285 1.15412 0.99193 0.83459 1.43531 0.98193 1.00429 1.02730 1.94535 1.50680 1.72192 1.21090 1.94559 1.40456 1.10479 1.93171 1.17110 0.92534 0.83275 0.91890 1.91649 1.76333 1.43546 1.97009 1.21622 1.04092 0.94924 0.98220 1.18325 0.90787 0.87372 0.86973 1.84849 1.49789 1.63109 1.32193 0.92939 0.99804 0.98093 0.89226 0.90496 0.81376 0.78655 0.70887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.22 15 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 15 3 Si 0.96 42.40 29.54 68.60 2.03 44.42 15 4 H -0.28 -11.89 7.11 99.48 0.71 -11.19 15 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 15 7 C -0.54 -28.33 9.11 25.60 0.23 -28.10 15 8 H 0.07 3.36 7.74 -2.91 -0.02 3.34 15 9 C 0.03 1.61 4.95 29.85 0.15 1.76 15 10 C -0.06 -1.97 4.95 29.85 0.15 -1.82 15 11 C -0.11 -3.09 5.15 -19.76 -0.10 -3.20 15 12 C -0.01 -0.37 9.17 22.25 0.20 -0.17 15 13 C -0.11 -3.12 6.86 36.44 0.25 -2.87 15 14 N 0.04 1.18 4.45 -46.32 -0.21 0.97 15 15 O -0.17 -5.74 18.44 18.88 0.35 -5.40 15 16 O -0.17 -5.85 17.42 18.88 0.33 -5.52 15 17 C 0.17 4.35 7.25 22.36 0.16 4.51 15 18 F -0.11 -2.79 15.48 44.97 0.70 -2.09 15 19 C -0.17 -3.45 9.97 22.41 0.22 -3.22 15 20 C 0.21 5.05 6.67 22.50 0.15 5.20 15 21 O -0.48 -10.63 12.64 -92.43 -1.17 -11.80 15 22 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 23 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 15 24 H 0.00 0.04 8.05 -2.39 -0.02 0.02 15 25 H 0.09 2.66 7.85 -2.39 -0.02 2.64 15 26 H 0.08 2.45 8.00 -2.39 -0.02 2.43 15 27 H 0.17 4.53 7.58 -2.91 -0.02 4.51 15 28 H 0.20 2.65 8.06 -2.91 -0.02 2.63 15 29 H 0.43 4.17 9.06 -74.06 -0.67 3.50 15 Total: -1.00 -67.75 274.91 4.72 -63.03 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: 0.53 Total: -0.91 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 1.88 Total: -27.49 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.08 Total: -54.25 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.49 Total: -22.71 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.70 Total: -2.09 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -67.75 4.72 -63.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260332501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.967 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds