Wall clock time and date at job start Mon Mar 30 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38292 * 119.97600 * 2 1 4 4 C 1.38237 * 120.11563 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.95853 * 179.71793 * 4 3 2 6 6 C 1.38194 * 120.07958 * 359.97438 * 4 3 2 7 7 C 1.50700 * 120.02061 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47348 * 347.70627 * 7 6 4 9 9 N 1.46894 * 109.47090 * 227.70698 * 7 6 4 10 10 C 1.50700 * 109.47074 * 107.70815 * 7 6 4 11 11 H 1.08004 * 119.99620 * 359.97438 * 10 7 6 12 12 C 1.37873 * 120.00003 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00097 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99867 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47050 * 90.00374 * 14 12 10 16 16 H 1.48505 * 109.47017 * 210.00044 * 14 12 10 17 17 H 1.48497 * 109.47225 * 330.00081 * 14 12 10 18 18 C 1.38662 * 119.95508 * 359.97438 * 6 4 3 19 19 O 1.35925 * 120.05582 * 180.02562 * 18 6 4 20 20 C 1.38208 * 119.98148 * 179.97438 * 2 1 3 21 21 Cl 1.73603 * 120.03683 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.47080 * 90.00765 * 1 2 3 23 23 H 1.08998 * 109.47417 * 210.00008 * 1 2 3 24 24 H 1.08998 * 109.47573 * 330.00547 * 1 2 3 25 25 H 1.07994 * 119.93941 * 359.96893 * 3 2 1 26 26 H 1.09006 * 109.47116 * 95.92685 * 5 4 3 27 27 H 1.08993 * 109.46941 * 215.92769 * 5 4 3 28 28 H 1.09004 * 109.46924 * 335.92836 * 5 4 3 29 29 H 1.00899 * 110.99882 * 300.00207 * 9 7 6 30 30 H 1.00904 * 111.00285 * 63.95252 * 9 7 6 31 31 H 0.96997 * 120.00135 * 179.97438 * 13 12 10 32 32 H 0.96705 * 113.99724 * 269.97047 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3297 2.5088 -0.0070 6 6 4.2758 0.0072 -0.0005 7 6 5.7828 0.0124 -0.0017 8 1 6.1425 1.0176 -0.2212 9 7 6.2749 -0.9183 -1.0261 10 6 6.2877 -0.4174 1.3516 11 1 5.5873 -0.6688 2.1344 12 6 7.6436 -0.4898 1.5904 13 7 8.4965 -0.1832 0.6374 14 14 8.2694 -1.0219 3.2682 15 1 8.4389 -2.4970 3.2883 16 1 9.5759 -0.3698 3.5388 17 1 7.2910 -0.6218 4.3112 18 6 3.5862 -1.1958 0.0005 19 8 4.2682 -2.3715 0.0011 20 6 2.1976 -1.1971 0.0005 21 17 1.3301 -2.7009 0.0019 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6566 2.1324 -0.0005 26 1 4.6028 2.7761 1.0139 27 1 5.2320 2.4074 -0.6098 28 1 3.6961 3.2886 -0.4296 29 1 5.9547 -1.8578 -0.8448 30 1 6.0037 -0.6159 -1.9498 31 1 9.4504 -0.2337 0.8056 32 1 4.4648 -2.7125 -0.8822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260352006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:29 Heat of formation + Delta-G solvation = -26.210164 kcal Electronic energy + Delta-G solvation = -17150.895358 eV Core-core repulsion = 14330.324237 eV Total energy + Delta-G solvation = -2820.571122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.82771 -36.69453 -36.31023 -34.62353 -32.55112 -31.13576 -30.13000 -27.21066 -26.43126 -25.31896 -22.25703 -21.25657 -19.76519 -17.36955 -16.75025 -16.02888 -15.59458 -14.68556 -14.41489 -14.00162 -13.65243 -13.30171 -12.96496 -12.87982 -12.60257 -12.33035 -12.22445 -11.96085 -11.49813 -11.33909 -10.98592 -10.78813 -10.78315 -10.55565 -10.51375 -10.08601 -9.70959 -9.08635 -8.36927 -8.05274 -7.89172 -7.08012 -5.84069 -3.95606 1.51364 1.67113 2.47871 3.37922 3.44162 3.48216 3.90136 4.52317 4.55949 5.00801 5.23945 5.38984 5.48526 5.57775 5.66955 5.72525 5.87574 5.93270 6.05516 6.11271 6.32285 6.45163 6.55011 6.59218 6.67958 6.93765 7.20855 7.49843 7.96388 8.08913 8.20530 8.62477 9.00893 9.17111 9.70926 11.20596 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.007632 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.439844 B = 3668.097317 C = 4166.073267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.124 4.124 4 C -0.067 4.067 5 C -0.112 4.112 6 C -0.096 4.096 7 C 0.259 3.741 8 H 0.057 0.943 9 N -0.812 5.812 10 C -0.514 4.514 11 H 0.051 0.949 12 C 0.083 3.917 13 N -0.851 5.851 14 Si 0.884 3.116 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.124 3.876 19 O -0.467 6.467 20 C -0.072 4.072 21 Cl -0.077 7.077 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.322 0.678 30 H 0.293 0.707 31 H 0.255 0.745 32 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.005 1.426 -4.190 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.068 4.068 5 C -0.168 4.168 6 C -0.100 4.100 7 C 0.150 3.850 8 H 0.074 0.926 9 N -0.343 5.343 10 C -0.553 4.553 11 H 0.070 0.930 12 C -0.123 4.123 13 N -0.486 5.486 14 Si 0.711 3.289 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.201 1.201 18 C 0.077 3.923 19 O -0.276 6.276 20 C -0.099 4.099 21 Cl -0.049 7.049 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -12.168 1.527 -3.371 12.718 hybrid contribution -0.728 -0.809 0.296 1.127 sum -12.896 0.719 -3.075 13.277 Atomic orbital electron populations 1.20751 0.90866 1.02869 1.02189 1.19413 0.96030 0.91135 1.02395 1.20793 0.93603 0.96528 1.03272 1.19842 0.92947 0.95620 0.98427 1.20814 1.00063 0.92730 1.03204 1.22034 1.02094 0.90291 0.95545 1.18257 0.79623 0.94642 0.92513 0.92574 1.59314 1.67355 1.05323 1.02318 1.20741 0.91321 1.47966 0.95264 0.93036 1.24899 0.96905 0.94610 0.95880 1.70092 1.01432 1.45906 1.31195 0.86761 0.78064 0.78887 0.85149 1.20736 1.21392 1.20119 1.18028 0.86936 0.86361 1.00933 1.85007 1.75263 1.35233 1.32062 1.21273 0.91580 0.86658 1.10375 1.98305 1.76574 1.32883 1.97099 0.91360 0.91292 0.91563 0.85884 0.90634 0.90315 0.92568 0.86103 0.89726 0.93554 0.76704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.61 36.00 0.35 -0.98 16 2 C -0.09 -1.38 5.88 -104.62 -0.62 -2.00 16 3 C -0.12 -1.92 9.33 -39.56 -0.37 -2.29 16 4 C -0.07 -1.21 5.88 -104.64 -0.62 -1.82 16 5 C -0.11 -1.79 9.36 36.01 0.34 -1.45 16 6 C -0.10 -1.98 4.89 -104.48 -0.51 -2.49 16 7 C 0.26 6.17 2.54 -70.02 -0.18 5.99 16 8 H 0.06 1.42 5.57 -51.93 -0.29 1.14 16 9 N -0.81 -18.34 8.44 -6.65 -0.06 -18.40 16 10 C -0.51 -14.12 8.38 -34.44 -0.29 -14.40 16 11 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 12 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 13 N -0.85 -24.52 12.77 55.43 0.71 -23.81 16 14 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.12 2.41 6.45 -39.20 -0.25 2.16 16 19 O -0.47 -9.05 10.63 -19.50 -0.21 -9.26 16 20 C -0.07 -1.25 6.33 -39.36 -0.25 -1.50 16 21 Cl -0.08 -1.19 26.84 -51.86 -1.39 -2.58 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.83 6.90 -51.93 -0.36 0.47 16 24 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 25 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.35 6.24 -51.93 -0.32 1.03 16 28 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 29 H 0.32 6.90 5.36 -39.29 -0.21 6.68 16 30 H 0.29 5.83 9.06 -39.29 -0.36 5.47 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.38 5.78 7.75 45.56 0.35 6.13 16 LS Contribution 280.95 15.07 4.23 4.23 Total: -1.00 -30.57 280.95 -7.06 -37.63 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -2.83 Total: 11.98 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.49 Total: -16.56 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.65 Total: -42.21 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.21 Total: -9.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.39 Total: -2.58 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.57 -7.06 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.421 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds