Wall clock time and date at job start Mon Mar 30 2020 06:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38292 * 119.97600 * 2 1 4 4 C 1.38237 * 120.11563 * 180.02562 * 3 2 1 5 5 C 1.50705 * 119.95853 * 179.71793 * 4 3 2 6 6 C 1.38194 * 120.07958 * 359.97438 * 4 3 2 7 7 C 1.50700 * 120.02061 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47348 * 347.70627 * 7 6 4 9 9 N 1.46894 * 109.47090 * 227.70698 * 7 6 4 10 10 C 1.50700 * 109.47074 * 107.70815 * 7 6 4 11 11 H 1.08004 * 119.99620 * 359.97438 * 10 7 6 12 12 C 1.37873 * 120.00003 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00097 * 0.02562 * 12 10 7 14 14 Si 1.86806 * 119.99867 * 179.97438 * 12 10 7 15 15 H 1.48499 * 109.47050 * 90.00374 * 14 12 10 16 16 H 1.48505 * 109.47017 * 210.00044 * 14 12 10 17 17 H 1.48497 * 109.47225 * 330.00081 * 14 12 10 18 18 C 1.38662 * 119.95508 * 359.97438 * 6 4 3 19 19 O 1.35925 * 120.05582 * 180.02562 * 18 6 4 20 20 C 1.38208 * 119.98148 * 179.97438 * 2 1 3 21 21 Cl 1.73603 * 120.03683 * 359.97438 * 20 2 1 22 22 H 1.09004 * 109.47080 * 90.00765 * 1 2 3 23 23 H 1.08998 * 109.47417 * 210.00008 * 1 2 3 24 24 H 1.08998 * 109.47573 * 330.00547 * 1 2 3 25 25 H 1.07994 * 119.93941 * 359.96893 * 3 2 1 26 26 H 1.09006 * 109.47116 * 95.92685 * 5 4 3 27 27 H 1.08993 * 109.46941 * 215.92769 * 5 4 3 28 28 H 1.09004 * 109.46924 * 335.92836 * 5 4 3 29 29 H 1.00899 * 110.99882 * 300.00207 * 9 7 6 30 30 H 1.00904 * 111.00285 * 63.95252 * 9 7 6 31 31 H 0.96997 * 120.00135 * 179.97438 * 13 12 10 32 32 H 0.96705 * 113.99724 * 269.97047 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3297 2.5088 -0.0070 6 6 4.2758 0.0072 -0.0005 7 6 5.7828 0.0124 -0.0017 8 1 6.1425 1.0176 -0.2212 9 7 6.2749 -0.9183 -1.0261 10 6 6.2877 -0.4174 1.3516 11 1 5.5873 -0.6688 2.1344 12 6 7.6436 -0.4898 1.5904 13 7 8.4965 -0.1832 0.6374 14 14 8.2694 -1.0219 3.2682 15 1 8.4389 -2.4970 3.2883 16 1 9.5759 -0.3698 3.5388 17 1 7.2910 -0.6218 4.3112 18 6 3.5862 -1.1958 0.0005 19 8 4.2682 -2.3715 0.0011 20 6 2.1976 -1.1971 0.0005 21 17 1.3301 -2.7009 0.0019 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6566 2.1324 -0.0005 26 1 4.6028 2.7761 1.0139 27 1 5.2320 2.4074 -0.6098 28 1 3.6961 3.2886 -0.4296 29 1 5.9547 -1.8578 -0.8448 30 1 6.0037 -0.6159 -1.9498 31 1 9.4504 -0.2337 0.8056 32 1 4.4648 -2.7125 -0.8822 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260352006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:28 Heat of formation + Delta-G solvation = -47.442233 kcal Electronic energy + Delta-G solvation = -17151.816050 eV Core-core repulsion = 14330.324237 eV Total energy + Delta-G solvation = -2821.491813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21947 -38.08561 -37.62234 -36.26404 -34.16398 -32.93449 -31.47276 -28.65483 -27.85125 -27.05085 -23.80968 -22.76290 -21.18036 -18.84810 -18.56744 -17.54298 -17.15392 -16.34613 -16.03049 -15.77478 -14.86472 -14.57616 -14.47159 -14.31724 -14.14614 -13.74168 -13.47255 -13.23195 -13.02286 -12.82260 -12.65522 -12.51101 -12.36682 -12.00407 -11.87589 -11.80246 -11.32447 -11.01016 -10.49112 -9.39682 -9.31790 -8.80783 -7.95693 -6.12476 0.17476 0.32579 1.18815 1.39766 1.42207 1.50478 2.44734 2.60146 3.19570 3.29329 3.84360 3.99080 4.24102 4.36862 4.46444 4.55108 4.64501 4.73095 4.81262 4.86127 4.99045 5.16296 5.17921 5.31113 5.37805 5.50959 5.76057 5.83598 5.89722 6.21833 6.67406 6.76098 7.15626 7.31899 7.56724 9.07431 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024227 B = 0.007632 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.439844 B = 3668.097317 C = 4166.073267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.117 4.117 4 C -0.077 4.077 5 C -0.108 4.108 6 C -0.129 4.129 7 C 0.266 3.734 8 H 0.035 0.965 9 N -0.824 5.824 10 C -0.522 4.522 11 H 0.030 0.970 12 C 0.039 3.961 13 N -0.878 5.878 14 Si 0.937 3.063 15 H -0.283 1.283 16 H -0.280 1.280 17 H -0.276 1.276 18 C 0.109 3.891 19 O -0.485 6.485 20 C -0.085 4.085 21 Cl -0.063 7.063 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.089 0.911 25 H 0.162 0.838 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.327 0.673 30 H 0.308 0.692 31 H 0.254 0.746 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.221 2.028 -4.173 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.135 4.135 4 C -0.078 4.078 5 C -0.164 4.164 6 C -0.133 4.133 7 C 0.156 3.844 8 H 0.052 0.948 9 N -0.357 5.357 10 C -0.561 4.561 11 H 0.048 0.952 12 C -0.164 4.164 13 N -0.515 5.515 14 Si 0.764 3.236 15 H -0.209 1.209 16 H -0.205 1.205 17 H -0.202 1.202 18 C 0.064 3.936 19 O -0.296 6.296 20 C -0.112 4.112 21 Cl -0.034 7.034 22 H 0.105 0.895 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.179 0.821 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.144 0.856 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -14.394 2.127 -3.357 14.932 hybrid contribution -0.158 -1.012 0.256 1.055 sum -14.552 1.115 -3.101 14.920 Atomic orbital electron populations 1.20852 0.87907 1.04038 1.03723 1.19932 0.98113 0.90337 0.99770 1.21162 0.92531 0.98183 1.01601 1.20115 0.94353 0.95227 0.98063 1.20798 0.99923 0.93185 1.02542 1.21721 1.00303 0.92112 0.99116 1.17858 0.82174 0.93338 0.90997 0.94782 1.59105 1.68014 1.05550 1.02996 1.20948 0.91147 1.47441 0.96592 0.95204 1.25510 0.97230 0.94955 0.98736 1.70187 1.01441 1.47194 1.32676 0.85918 0.77698 0.78267 0.81729 1.20873 1.20526 1.20157 1.18146 0.87991 0.85840 1.01667 1.84941 1.75652 1.35524 1.33438 1.21375 0.91023 0.88151 1.10656 1.98304 1.75922 1.32115 1.97044 0.89470 0.91405 0.89179 0.82061 0.91545 0.92290 0.88754 0.85575 0.88141 0.93665 0.75277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 9.61 71.23 0.68 -1.47 16 2 C -0.08 -2.26 5.88 -19.86 -0.12 -2.38 16 3 C -0.12 -3.26 9.33 22.28 0.21 -3.05 16 4 C -0.08 -2.66 5.88 -19.87 -0.12 -2.78 16 5 C -0.11 -3.37 9.36 71.24 0.67 -2.70 16 6 C -0.13 -5.35 4.89 -19.77 -0.10 -5.45 16 7 C 0.27 13.02 2.54 43.42 0.11 13.13 16 8 H 0.03 1.81 5.57 -2.39 -0.01 1.79 16 9 N -0.82 -38.11 8.44 -174.96 -1.48 -39.59 16 10 C -0.52 -29.43 8.38 25.60 0.21 -29.21 16 11 H 0.03 1.77 7.74 -2.91 -0.02 1.74 16 12 C 0.04 2.20 5.39 84.65 0.46 2.66 16 13 N -0.88 -51.57 12.77 21.45 0.27 -51.29 16 14 Si 0.94 45.43 29.54 68.60 2.03 47.46 16 15 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 18 C 0.11 4.25 6.45 22.52 0.15 4.40 16 19 O -0.48 -19.03 10.63 -92.71 -0.99 -20.01 16 20 C -0.08 -2.82 6.33 22.41 0.14 -2.68 16 21 Cl -0.06 -1.83 26.84 -2.72 -0.07 -1.90 16 22 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 23 H 0.07 1.39 6.90 -2.39 -0.02 1.37 16 24 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 25 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 26 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 27 H 0.06 2.06 6.24 -2.39 -0.01 2.04 16 28 H 0.09 2.15 8.04 -2.39 -0.02 2.13 16 29 H 0.33 14.34 5.36 -89.69 -0.48 13.86 16 30 H 0.31 12.50 9.06 -89.69 -0.81 11.69 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.39 12.18 7.75 -74.05 -0.57 11.61 16 Total: -1.00 -66.20 280.95 1.38 -64.82 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.69 Total: 30.04 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 2.30 Total: -29.53 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -1.20 Total: -90.88 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.99 Total: -20.01 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.90 kcal Total: -66.20 1.38 -64.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.379 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds