Wall clock time and date at job start Mon Mar 30 2020 06:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38285 * 119.97990 * 2 1 4 4 C 1.38235 * 120.12336 * 179.74202 * 3 2 1 5 5 C 1.50692 * 119.96796 * 180.27492 * 4 3 2 6 6 C 1.38202 * 120.07057 * 0.50785 * 4 3 2 7 7 C 1.50698 * 120.01911 * 179.74059 * 6 4 3 8 8 H 1.09004 * 109.47122 * 13.14825 * 7 6 4 9 9 N 1.46896 * 109.47039 * 133.14588 * 7 6 4 10 10 C 1.50698 * 109.47324 * 253.14992 * 7 6 4 11 11 H 1.08004 * 119.99969 * 335.13480 * 10 7 6 12 12 C 1.37874 * 120.00175 * 155.13953 * 10 7 6 13 13 N 1.31511 * 120.00163 * 6.61284 * 12 10 7 14 14 Si 1.86808 * 119.99960 * 186.60900 * 12 10 7 15 15 H 1.48506 * 109.47091 * 270.00069 * 14 12 10 16 16 H 1.48500 * 109.47029 * 30.00045 * 14 12 10 17 17 H 1.48496 * 109.47181 * 150.00271 * 14 12 10 18 18 C 1.38660 * 119.95475 * 359.47133 * 6 4 3 19 19 O 1.35931 * 120.05852 * 180.29576 * 18 6 4 20 20 C 1.38213 * 119.97855 * 179.97438 * 2 1 3 21 21 Cl 1.73605 * 120.03798 * 359.97438 * 20 2 1 22 22 H 1.08993 * 109.47124 * 270.02231 * 1 2 3 23 23 H 1.08994 * 109.46822 * 30.02304 * 1 2 3 24 24 H 1.09002 * 109.46944 * 150.02469 * 1 2 3 25 25 H 1.08004 * 119.94051 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47585 * 264.01461 * 5 4 3 27 27 H 1.09004 * 109.47226 * 24.00877 * 5 4 3 28 28 H 1.08993 * 109.47678 * 144.01043 * 5 4 3 29 29 H 1.00906 * 110.99643 * 70.34580 * 9 7 6 30 30 H 1.00902 * 111.00066 * 194.29406 * 9 7 6 31 31 H 0.96996 * 119.99737 * 355.20373 * 13 12 10 32 32 H 0.96703 * 114.00256 * 89.99413 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1978 0.0000 4 6 3.5804 1.2013 0.0054 5 6 4.3298 2.5086 0.0116 6 6 4.2759 0.0070 0.0002 7 6 5.7829 0.0122 0.0002 8 1 6.1428 1.0132 0.2383 9 7 6.2758 -0.9376 1.0065 10 6 6.2866 -0.3920 -1.3614 11 1 5.6686 -0.9973 -2.0080 12 6 7.5364 0.0108 -1.7816 13 7 8.3404 0.6356 -0.9492 14 14 8.0880 -0.3310 -3.5334 15 1 8.7672 -1.6504 -3.5900 16 1 6.9051 -0.3442 -4.4311 17 1 9.0301 0.7299 -3.9716 18 6 3.5862 -1.1958 0.0006 19 8 4.2682 -2.3717 0.0016 20 6 2.1977 -1.1972 0.0005 21 17 1.3301 -2.7009 0.0019 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6567 2.1324 0.0004 26 1 4.6075 2.7732 -1.0087 27 1 3.6945 3.2897 0.4293 28 1 5.2295 2.4089 0.6187 29 1 6.1008 -1.8896 0.7215 30 1 7.2565 -0.7904 1.1929 31 1 8.0293 0.8748 -0.0622 32 1 4.4652 -2.7114 0.8853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260352011.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:30 Heat of formation + Delta-G solvation = -60.606510 kcal Electronic energy + Delta-G solvation = -17176.022184 eV Core-core repulsion = 14353.959525 eV Total energy + Delta-G solvation = -2822.062659 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.077 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18900 -38.03517 -37.68368 -36.66675 -34.27419 -32.89213 -31.51510 -28.64739 -27.88185 -26.74196 -23.98254 -22.85104 -21.30455 -19.16215 -18.71368 -18.04720 -16.93539 -16.15677 -15.90980 -15.70836 -14.95950 -14.68187 -14.60912 -14.39788 -14.14492 -14.02291 -13.45489 -13.32727 -13.13139 -12.90268 -12.63520 -12.45618 -12.07747 -11.99117 -11.91444 -11.83231 -11.37369 -10.96126 -10.69910 -9.51501 -9.38128 -9.17185 -8.55637 -6.37676 0.17086 0.34233 1.18018 1.47918 1.54219 1.73501 2.46267 2.58873 3.13866 3.25145 3.82758 3.88906 4.18465 4.21747 4.45620 4.48778 4.62665 4.69260 4.77207 4.81361 4.87405 5.07229 5.18643 5.27393 5.31036 5.39899 5.68091 5.89536 5.94674 6.11185 6.54579 6.57145 6.79126 6.87206 7.37075 8.71903 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.007571 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.868220 B = 3697.618727 C = 4114.254512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.116 4.116 4 C -0.085 4.085 5 C -0.105 4.105 6 C -0.078 4.078 7 C 0.231 3.769 8 H 0.040 0.960 9 N -0.846 5.846 10 C -0.611 4.611 11 H 0.028 0.972 12 C -0.017 4.017 13 N -0.927 5.927 14 Si 1.108 2.892 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.279 1.279 18 C 0.115 3.885 19 O -0.488 6.488 20 C -0.084 4.084 21 Cl -0.061 7.061 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.163 0.837 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.332 0.668 30 H 0.323 0.677 31 H 0.261 0.739 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.064 0.148 3.297 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.084 4.084 3 C -0.134 4.134 4 C -0.086 4.086 5 C -0.162 4.162 6 C -0.080 4.080 7 C 0.122 3.878 8 H 0.057 0.943 9 N -0.377 5.377 10 C -0.651 4.651 11 H 0.046 0.954 12 C -0.217 4.217 13 N -0.565 5.565 14 Si 0.932 3.068 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.204 1.204 18 C 0.069 3.931 19 O -0.299 6.299 20 C -0.111 4.111 21 Cl -0.032 7.032 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.087 0.913 25 H 0.180 0.820 26 H 0.080 0.920 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.134 0.866 31 H 0.072 0.928 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -13.448 0.533 2.165 13.632 hybrid contribution -0.152 -0.939 0.740 1.205 sum -13.599 -0.406 2.904 13.912 Atomic orbital electron populations 1.20846 0.87744 1.04079 1.03737 1.19926 0.98195 0.90253 0.99986 1.21103 0.92229 0.98326 1.01693 1.20026 0.94577 0.94942 0.99025 1.20754 0.99760 0.93576 1.02089 1.20439 0.97116 0.92217 0.98188 1.17981 0.87062 0.93271 0.89528 0.94262 1.59638 1.21631 1.08671 1.47713 1.22661 1.04031 1.35142 1.03236 0.95369 1.26964 0.93571 0.93690 1.07476 1.70930 1.36703 1.40315 1.08553 0.83017 0.75628 0.76950 0.71249 1.20377 1.20859 1.20414 1.18048 0.87962 0.85880 1.01221 1.84818 1.75823 1.35458 1.33758 1.21335 0.90936 0.88203 1.10623 1.98298 1.75856 1.32015 1.97046 0.89480 0.89152 0.91303 0.81969 0.91967 0.88528 0.92897 0.85321 0.86637 0.92804 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 9.61 71.24 0.68 -1.54 16 2 C -0.08 -2.44 5.88 -19.86 -0.12 -2.55 16 3 C -0.12 -3.43 9.33 22.28 0.21 -3.22 16 4 C -0.08 -3.14 5.88 -19.88 -0.12 -3.26 16 5 C -0.11 -3.55 9.35 71.23 0.67 -2.88 16 6 C -0.08 -3.39 4.94 -19.77 -0.10 -3.49 16 7 C 0.23 11.28 2.24 43.42 0.10 11.37 16 8 H 0.04 2.05 4.44 -2.38 -0.01 2.04 16 9 N -0.85 -37.84 8.94 -174.96 -1.56 -39.41 16 10 C -0.61 -33.77 8.22 25.60 0.21 -33.56 16 11 H 0.03 1.66 7.81 -2.91 -0.02 1.64 16 12 C -0.02 -0.92 5.45 84.65 0.46 -0.46 16 13 N -0.93 -53.47 13.63 21.45 0.29 -53.18 16 14 Si 1.11 50.71 29.91 68.60 2.05 52.76 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 C 0.11 4.64 6.46 22.52 0.15 4.79 16 19 O -0.49 -19.42 10.56 -92.78 -0.98 -20.40 16 20 C -0.08 -2.90 6.33 22.41 0.14 -2.75 16 21 Cl -0.06 -1.82 26.84 -2.72 -0.07 -1.89 16 22 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 24 H 0.07 1.45 6.90 -2.39 -0.02 1.43 16 25 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 26 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.10 2.41 8.04 -2.39 -0.02 2.39 16 28 H 0.05 1.98 6.25 -2.39 -0.01 1.97 16 29 H 0.33 14.36 5.83 -89.69 -0.52 13.83 16 30 H 0.32 15.05 8.51 -89.69 -0.76 14.28 16 31 H 0.26 14.99 6.25 -92.71 -0.58 14.41 16 32 H 0.39 12.86 8.02 -74.06 -0.59 12.26 16 Total: -1.00 -63.40 279.37 1.51 -61.89 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.50 Total: 37.78 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 2.28 Total: -37.55 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -1.27 Total: -92.59 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.98 Total: -20.40 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.07 Total: -1.89 kcal Total: -63.40 1.51 -61.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260352011.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.286 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds