Wall clock time and date at job start Mon Mar 30 2020 06:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99902 * 2 1 4 4 C 1.38956 * 120.06138 * 270.01918 * 3 2 1 5 5 F 1.35095 * 120.04869 * 359.96015 * 4 3 2 6 6 C 1.38285 * 119.90062 * 179.97438 * 4 3 2 7 7 C 1.38303 * 120.03322 * 0.02562 * 6 4 3 8 8 N 1.48012 * 119.93670 * 179.97438 * 7 6 4 9 9 O 1.21808 * 119.99908 * 359.97438 * 8 7 6 10 10 O 1.21799 * 119.99809 * 179.97438 * 8 7 6 11 11 C 1.38214 * 120.12446 * 359.73964 * 7 6 4 12 12 C 1.38225 * 120.09454 * 0.51228 * 11 7 6 13 13 C 1.50698 * 120.01154 * 179.76681 * 12 11 7 14 14 C 1.50706 * 109.47294 * 264.72155 * 13 12 11 15 15 H 1.07999 * 119.99515 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99883 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00043 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47293 * 89.99746 * 18 16 14 20 20 H 1.48504 * 109.47104 * 209.99992 * 18 16 14 21 21 H 1.48495 * 109.47249 * 329.99739 * 18 16 14 22 22 H 1.08997 * 109.47359 * 59.99719 * 1 2 3 23 23 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47015 * 300.00442 * 1 2 3 25 25 H 1.08009 * 119.98100 * 179.97438 * 6 4 3 26 26 H 1.08000 * 119.95383 * 180.25565 * 11 7 6 27 27 H 1.09001 * 109.46665 * 144.72536 * 13 12 11 28 28 H 1.09000 * 109.47722 * 24.72868 * 13 12 11 29 29 H 0.97004 * 119.99507 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.3618 1.8317 -1.2027 5 9 2.0566 1.2317 -2.3739 6 6 2.9891 3.0641 -1.1988 7 6 3.3022 3.6777 0.0005 8 7 3.9741 4.9965 0.0022 9 8 4.2513 5.5402 -1.0521 10 8 4.2500 5.5381 1.0577 11 6 2.9844 3.0639 1.1974 12 6 2.3621 1.8297 1.1997 13 6 2.0212 1.1598 2.5058 14 6 3.1200 0.1983 2.8791 15 1 3.9794 0.0841 2.2350 16 6 3.0281 -0.5356 4.0426 17 7 1.9813 -0.3968 4.8266 18 14 4.3904 -1.7269 4.5055 19 1 5.4083 -1.0209 5.3244 20 1 3.8191 -2.8522 5.2882 21 1 5.0268 -2.2547 3.2720 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.2354 3.5473 -2.1328 26 1 3.2265 3.5475 2.1323 27 1 1.0825 0.6158 2.4010 28 1 1.9185 1.9146 3.2855 29 1 1.9169 -0.9129 5.6454 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260434540.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:29 Heat of formation + Delta-G solvation = -80.586948 kcal Electronic energy + Delta-G solvation = -18624.824815 eV Core-core repulsion = 15237.726269 eV Total energy + Delta-G solvation = -3387.098546 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.24756 -43.35586 -41.22922 -38.67590 -37.75356 -35.62507 -33.43918 -32.14999 -29.51331 -28.56264 -26.86482 -25.65488 -23.70264 -22.84452 -20.16695 -19.98961 -19.17220 -18.75743 -18.55516 -18.17328 -17.57548 -17.28570 -16.58138 -16.23994 -15.81814 -15.14681 -14.65207 -14.52142 -14.28032 -13.69374 -13.44113 -13.34029 -12.77058 -12.76058 -12.72299 -12.62214 -12.36276 -12.33972 -11.85560 -11.70188 -11.15368 -10.62226 -10.27596 -10.14997 -8.25509 -6.35798 -1.41562 -0.35731 0.07786 0.17368 1.39846 1.41152 1.51003 1.83454 2.35682 2.41467 2.72202 3.09268 3.20993 3.40666 3.62178 3.88501 4.14164 4.28486 4.35691 4.44352 4.60267 4.66953 4.69972 4.93795 5.19261 5.28187 5.46977 5.66941 6.03933 6.18195 6.45723 6.72075 7.32202 8.84543 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.007490 C = 0.005924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.000252 B = 3737.404671 C = 4725.583172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.336 6.336 3 C 0.116 3.884 4 C 0.086 3.914 5 F -0.115 7.115 6 C -0.082 4.082 7 C -0.029 4.029 8 N 0.035 4.965 9 O -0.146 6.146 10 O -0.183 6.183 11 C -0.050 4.050 12 C -0.049 4.049 13 C 0.063 3.937 14 C -0.527 4.527 15 H 0.051 0.949 16 C 0.017 3.983 17 N -0.922 5.922 18 Si 0.957 3.043 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.271 1.271 22 H 0.067 0.933 23 H 0.118 0.882 24 H 0.048 0.952 25 H 0.193 0.807 26 H 0.160 0.840 27 H 0.029 0.971 28 H 0.023 0.977 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 4.181 -11.118 12.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.253 6.253 3 C 0.070 3.930 4 C 0.065 3.935 5 F -0.094 7.094 6 C -0.102 4.102 7 C -0.113 4.113 8 N 0.554 4.446 9 O -0.367 6.367 10 O -0.393 6.393 11 C -0.069 4.069 12 C -0.051 4.051 13 C 0.027 3.973 14 C -0.565 4.565 15 H 0.069 0.931 16 C -0.183 4.183 17 N -0.561 5.561 18 Si 0.782 3.218 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.195 1.195 22 H 0.086 0.914 23 H 0.136 0.864 24 H 0.067 0.933 25 H 0.210 0.790 26 H 0.178 0.822 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.512 3.281 -10.953 11.707 hybrid contribution 0.532 -0.325 0.414 0.748 sum -1.980 2.956 -10.539 11.123 Atomic orbital electron populations 1.23299 0.75930 1.05532 1.01441 1.86067 1.22318 1.22812 1.94093 1.19021 0.96575 0.86590 0.90797 1.17429 1.02956 0.92082 0.81004 1.91547 1.91010 1.82655 1.44143 1.20747 0.97013 0.93253 0.99140 1.20663 1.08002 0.86427 0.96171 1.43522 0.98562 1.02204 1.00329 1.94485 1.55870 1.65604 1.20731 1.94575 1.57803 1.66140 1.20760 1.20939 0.94233 0.93861 0.97866 1.20607 0.95412 0.92101 0.96931 1.18105 0.97244 0.94787 0.87206 1.21173 1.05396 1.23340 1.06558 0.93091 1.25692 0.98016 0.98442 0.96114 1.70022 1.30065 1.42392 1.13623 0.85567 0.79267 0.78643 0.78346 1.19792 1.20465 1.19519 0.91426 0.86408 0.93293 0.79030 0.82219 0.95255 0.95840 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.80 113.37 1.22 2.06 15 2 O -0.34 -12.16 9.55 -93.00 -0.89 -13.05 15 3 C 0.12 4.05 5.70 22.53 0.13 4.18 15 4 C 0.09 2.51 7.31 22.45 0.16 2.67 15 5 F -0.12 -3.16 17.11 44.97 0.77 -2.39 15 6 C -0.08 -2.15 9.53 22.30 0.21 -1.94 15 7 C -0.03 -0.89 6.85 36.39 0.25 -0.64 15 8 N 0.04 1.11 4.45 -46.44 -0.21 0.90 15 9 O -0.15 -4.37 18.44 18.88 0.35 -4.02 15 10 O -0.18 -6.20 18.44 18.89 0.35 -5.86 15 11 C -0.05 -1.70 9.18 22.26 0.20 -1.49 15 12 C -0.05 -1.88 5.08 -19.78 -0.10 -1.98 15 13 C 0.06 2.98 4.83 29.10 0.14 3.12 15 14 C -0.53 -27.82 9.09 25.60 0.23 -27.58 15 15 H 0.05 2.70 7.74 -2.91 -0.02 2.68 15 16 C 0.02 0.90 5.46 84.65 0.46 1.36 15 17 N -0.92 -51.59 13.29 21.45 0.28 -51.31 15 18 Si 0.96 42.43 29.54 68.60 2.03 44.45 15 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 15 23 H 0.12 2.70 8.14 -2.39 -0.02 2.68 15 24 H 0.05 1.39 7.18 -2.39 -0.02 1.37 15 25 H 0.19 3.86 7.61 -2.91 -0.02 3.84 15 26 H 0.16 5.43 7.60 -2.91 -0.02 5.41 15 27 H 0.03 1.44 6.42 -2.39 -0.02 1.42 15 28 H 0.02 1.15 8.05 -2.39 -0.02 1.13 15 29 H 0.27 14.13 8.31 -92.71 -0.77 13.36 15 Total: -1.00 -58.49 275.18 6.79 -51.70 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: 1.19 Total: -0.19 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 2.92 Total: -20.25 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.08 Total: -50.40 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.19 Total: -22.92 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.77 Total: -2.39 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -58.49 6.79 -51.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260434540.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.886 kcal (2) G-P(sol) polarization free energy of solvation -58.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds